mRNA_Ecto-sp13_S_contig129.2382.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig129.2382.1
Unique NamemRNA_Ecto-sp13_S_contig129.2382.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: D7FNH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH0_ECTSI)

HSP 1 Score: 595 bits (1534), Expect = 1.760e-209
Identity = 323/351 (92.02%), Postives = 328/351 (93.45%), Query Frame = 2 
Query:  263 MVMANIATTLTAVVLLLADPAAGKGAGGITAAQLGKSAAGMAGPSPLKTLEEGVPRAVALAQLEQARRTREDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGPGKFEPVDVPAPPRAALTGRTEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALDTPAGRRKPGAKAKSLDEGPSHKKSRAEPLEEEEEEGDYESDSXXXXXGGWGSDEF 1315
            MVMAN+A +LTAV +LLADPAAGKGAGGITAAQLGKSAAGMAGPSPLKTLEEG+PRAVALAQLEQ     EDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRR+GPGKFEPVDVPAPPRAALTGR EMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALDTPAGRRKPGAKAKS DEG S KKSR EPLEE           XXXXXGGWGSDEF
Sbjct:    1 MVMANVAASLTAVAVLLADPAAGKGAGGITAAQLGKSAAGMAGPSPLKTLEEGLPRAVALAQLEQEI---EDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRKGPGKFEPVDVPAPPRAALTGRAEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALDTPAGRRKPGAKAKSPDEGSSKKKSR-EPLEEXXXXXXXXXXXXXXXXGGWGSDEF 347
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: A0A835Z4C9_9STRA (Ubiquitin fusion degradation protein UFD1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C9_9STRA)

HSP 1 Score: 243 bits (620), Expect = 3.250e-71
Identity = 126/262 (48.09%), Postives = 177/262 (67.56%), Query Frame = 2 
Query:  434 VALAQLEQARRTREDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGPGKFEPVDVPAPPRAALTGRTEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIV-LQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYR----------------------KTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALD 1150
            V LA+LEQ     ED+NVM+K+DR+++RL +VMPLTD F+P V  F H HLQ  D++S+P S+L E+  ++ E PWQFE++ V R+GPG + PV++  P R  L GRTEMPQLS V CS LDAR+PEQ++F+PDWMMK+LRL+PRDIV  R+K+L +++  V LQ HS +    +   AV+E ELRHYS++T GTT++F +                       +   K NV++C+DA G++ E+VC+QD+DV TD+   LD
Sbjct:   95 VQLAELEQEL---EDINVMNKYDRKMDRLLLVMPLTDSFEPAVGQFGHGHLQTSDRVSLPQSVLKEVQHRKLEFPWQFEIQRVHRRGPGDYLPVELSMPTRDDLAGRTEMPQLSRVTCSPLDARAPEQYIFIPDWMMKSLRLKPRDIVQLRYKNLPQSTGCVHLQAHSES---AATSHAVLEEELRHYSSLTAGTTISFVFNPQGAELGGAKGAKGKAKKGVGARREVKINVVQCVDAGGRAVESVCIQDADVGTDWLKPLD 350
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: A0A7S2UZC1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZC1_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.580e-62
Identity = 131/297 (44.11%), Postives = 179/297 (60.27%), Query Frame = 2 
Query:  335 GAGGITAAQLGKSAAGMAGPSPLKTLEEGVPRAVALAQLEQARRTREDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGP-GKFEPVD-------------VPAPPRAALTGRTEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALDTPAGRRKPGAK 1183
            GA  IT AQ   +A   A       L     RA+ LA++EQ     ED N M K DR L+R  +VMPLT  FDP V + AH H+Q GDKISMP S+   +M++  E PWQFE++++ R G   + +P D                      T + + P L  + CS+LD R+PE ++F+P WMMK+L LRPRD+V  RH  L + +   LQPH S FLK++NH+AV+E+ELRHYS++T G+T+AFRYRK  Y F+V+E + +DGK Q+A+CVQD +VA DF   LD    ++K   K
Sbjct:   16 GAALITNAQSSTAAGSQASSLDGNFLMNHFTRALKLAKVEQEV---EDFNSMKKLDRSLDRRYIVMPLTRAFDPPVGNIAHNHIQFGDKISMPKSLFKMIMKQHIEPPWQFEIEVINRVGDCEEKDPEDGDXXXXXXXXXXXXXXXXXXLSTSKLQWP-LKKLYCSLLDIRAPENYIFLPGWMMKSLGLRPRDVVRMRHFVLPQGTMAKLQPHHSDFLKLTNHRAVLESELRHYSSLTTGSTIAFRYRKKKYFFDVVEVM-SDGKIQDAICVQDCNVAADFVEPLDVVKKKKKAAKK 307
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: A0A6V1UP89_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UP89_HETAK)

HSP 1 Score: 186 bits (473), Expect = 1.930e-50
Identity = 118/298 (39.60%), Postives = 162/298 (54.36%), Query Frame = 2 
Query:  371 SAAGMAGPSPLKTLEEGVPRAVALAQLEQARRTREDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGPGKFEPVDVP-------------------------------------APPRAALTGRTEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALDT 1153
            S A + G S   T+ +   RAV  A++EQA    ED N + K D  L R  ++MP+ + FDP    F+  H+Q GDK+S+P SI S + R+    PW FE++++    P + + +                                         P R    G  +  +L  V  SILD  +PE ++F PDWM+KALRLRPRD+V  R   L K   I L+PHSS FLK+SNHQAVMETEL+HYS +T G TV  +YR T+Y+ +V E + +DGK   A+C++D+DVATDF   LDT
Sbjct:    8 SMAFLQGVSCSNTMGDPFARAVYRAKVEQAV---EDHNALSKLDNNLNRRCIIMPMNEGFDPPPGSFSRGHIQMGDKMSIPRSIFSHIQREDIGYPWLFEIEVLH--SPEEQDELKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSGPKRG---GARKKKELQRVYGSILDYAAPENYIFAPDWMLKALRLRPRDVVEVRLAALPKGGLIKLRPHSSDFLKLSNHQAVMETELKHYSCLTEGATVKIKYRDTVYELDVEELL-SDGKPVGALCIEDTDVATDFLPPLDT 296
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: A0A0G4FQT5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FQT5_VITBC)

HSP 1 Score: 180 bits (457), Expect = 1.350e-47
Identity = 97/243 (39.92%), Postives = 142/243 (58.44%), Query Frame = 2 
Query:  473 EDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGPGKF-----------------EPVDVPAPPRAALTGRTEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALD 1150
            ED+N++ K + R  R   VMP++++F+P   HF+H+H+  GDK+S P +I ++L+ +  EIPWQF L+ + R+   K                           R     R     L  V CS LD R+PE FVF+PDWMM AL L PRD++      L + + +  QPH+SAFLKMSNHQAV+E ELRHYS++T G+T+  +Y +  +  +V+E + +  ++ + VCVQD DV+TDF A  D
Sbjct:  102 EDINILEKAEGRHGRFLTVMPISEKFNPPPGHFSHDHVMYGDKVSFPRTISTQLLERNLEIPWQFVLEKIDRKELEKVWGGTATTTTXXXXXXXXXXXXXXXGDRIGGRQRYYKSGLKRVYCSTLDFRAPENFVFVPDWMMAALNLMPRDLLYCEFVRLPEGTTVTFQPHNSAFLKMSNHQAVLERELRHYSSLTAGSTIVIKYNRRNFLIDVVE-VKSGSEAYDGVCVQDCDVSTDFIAPKD 343
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: A0A7S3Q209_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q209_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.440e-40
Identity = 91/221 (41.18%), Postives = 128/221 (57.92%), Query Frame = 2 
Query:  515 RLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGPGKFEPVDVPAPPRAALTGRTEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKA-SKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDAD-GKSQEAVCVQDSDVATDFQAALDTPAGRRK 1171
            R  +V+PL D+FDP V  F+H H Q GDK+S+P    S + +  A++PW FE+  V           D    PR  L    E P+LS V    +D RSP+ +VF+P WMM+AL L+PRD+V  +      A S + L+PH+S F+ + NHQAV+ETEL+HYSA+TRG+T+ F Y    Y F+V++   +  G+      VQD D+A +F  A D     RK
Sbjct:   88 RRLIVLPLDDRFDPPVGVFSHGHTQTGDKMSLPRVFWSAIQKTNADVPWLFEVSRV-----------DGVTGPRVILPPNMEDPKLSKVVGGAIDFRSPDNYVFLPRWMMQALALKPRDVVDVKLIQTVPAGSAVKLRPHASEFVNIGNHQAVLETELKHYSALTRGSTIPFDYLGKRYYFDVVDLRSSPRGEKVPMAKVQDCDIAAEFIRAKDQMKKNRK 297
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: A0A7S2EXW9_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXW9_TRICV)

HSP 1 Score: 157 bits (398), Expect = 2.960e-40
Identity = 89/215 (41.40%), Postives = 127/215 (59.07%), Query Frame = 2 
Query:  515 RLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGPGKFEPVDVPAPPRAALTGR-TEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKD-LTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDAD-GKSQEAVCVQDSDVATDFQAALD 1150
            R  +V+PL ++FDP    F+H H+Q GDK+S+P +  + + + +AE+PW FE+  V           D    PRA +  R  E P L  V    +D RSP  +VF+P WMM AL L+PRD+V  R  + +   S + L+PHSS F+K+ NHQAV+ETEL+HYSA+T+G T+ F Y    Y F+V++   A  G+      VQD D+A +F  A D
Sbjct:   79 RRLIVLPLDERFDPPTGVFSHGHVQTGDKMSLPKNFWAAIAKTKAEVPWLFEVSRV-----------DGATGPRAVMPARGAEDPGLDKVVGGAIDFRSPSNYVFLPRWMMIALALKPRDVVDVRLVETVPPGSAVKLRPHSSEFVKIGNHQAVLETELKHYSALTKGATIPFDYNNKRYYFDVVDLRSAPRGEKVPMAKVQDCDIAAEFVRAKD 282
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: B7GA75_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GA75_PHATC)

HSP 1 Score: 154 bits (388), Expect = 1.590e-38
Identity = 91/222 (40.99%), Postives = 132/222 (59.46%), Query Frame = 2 
Query:  515 RLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGPGKFEPVDVPAPPRAALTGRTEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIV-LQPHSSAFLK-MSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDAD-GKSQEAVCVQDSDVATDFQAALDTPAGRRK 1171
            R  + +PL+D+FDP +  F+H+H+Q GDK+S+PA+    +    AE+PW F +K +      + E  D        +T    + QL  V    LD R+P  ++F+P WMM+AL ++PRDIV     +   A  +  L+PHSS F K ++N QAV+ETELRHYS++T+G+T+AF Y K  Y F+V+E   A  G+    V VQD D+ATDF  A D    RR+
Sbjct:   94 RRLICLPLSDRFDPPMGSFSHKHVQTGDKMSLPANFWQAIQLNHAEVPWLFSVKRIDGVTGERVEFSD-----DDIITPHKPLAQLDKVVGGPLDFRAPACYIFLPWWMMRALGVKPRDIVEVELFETVPAGSLAKLRPHSSDFGKEIANPQAVLETELRHYSSLTQGSTIAFDYNKKRYWFDVVELRSAPRGEKSSMVKVQDCDIATDFLIARDEIQNRRR 310
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: A0A6U3VNR1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3VNR1_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.810e-38
Identity = 90/210 (42.86%), Postives = 124/210 (59.05%), Query Frame = 2 
Query:  515 RLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGPGKFEP-VDVPAPPRAALTGRTEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRH-KDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDAD-GKSQEAVCVQDSDVATDF 1135
            R A+ +PL D+FDP V  F+H H+  GDK+S+P +    +M+ +AE+PW FE+  V     G   P V +PA      +  T    LS      LD RSP  +VF+P WM KAL LRPRD+V  R  K     S + L+PH+SAF  + NHQAV+ETEL+HYSA+T G+T+ F YR   + F+V++   A  G+      VQD D+A +F
Sbjct:   97 RRAIALPLDDRFDPPVGVFSHGHIYTGDKMSLPRNFWDAIMKSKAEVPWLFEVSRVD----GVSSPRVTMPADEHHHKSSAT----LSRAVGGALDFRSPNNYVFLPPWMFKALGLRPRDVVDVRLVKTTPPGSAVKLRPHTSAFTNIGNHQAVLETELKHYSALTLGSTIPFDYRGERFYFDVVDLRSAPRGERVPMAKVQDCDIAAEF 298
[Close]
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Match: I2CR02_NANGC (Ubiquitin fusion degradation 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR02_NANGC)

HSP 1 Score: 150 bits (379), Expect = 7.090e-38
Identity = 84/222 (37.84%), Postives = 126/222 (56.76%), Query Frame = 2 
Query:  524 MVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRQGPGKFEPVDVPAPPRAALTGRTEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALDTPA-GRRKPGAKA 1186
            +VMP+T+ FDP +    H  LQ  DKI +P S + E++ ++ E PW FE+  +     G   P   P+     L        + A+  S  D R+PE ++FMPDWMM +LRLRPRD+V  R   L +   +  QPH +AF K++N  AV+E EL++YS +T+GTT+ F++    Y  +VLE +       +A+ +QDSD+ TD + + +     RRKP A A
Sbjct:   26 IVMPMTELFDPPLGSILHGKLQYSDKIMLPKSFIYEVLGRKLEPPWHFEITPLDDLYTGAPSPFLAPS-----LAHWRRRHPVQALHASNFDFRAPENYIFMPDWMMLSLRLRPRDVVAMRFVRLPEGGLVSFQPHQAAFNKLANVHAVLEQELKYYSCVTQGTTIRFKHNGKEYALDVLETLGPKDVKVDAIKIQDSDIRTDIRPSKEEEKIRRRKPAAGA 242
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig129.2382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH0_ECTSI1.760e-20992.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4C9_9STRA3.250e-7148.09Ubiquitin fusion degradation protein UFD1-domain-c... [more]
A0A7S2UZC1_9STRA1.580e-6244.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1UP89_HETAK1.930e-5039.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4FQT5_VITBC1.350e-4739.92Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S3Q209_9STRA1.440e-4041.18Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S2EXW9_TRICV2.960e-4041.40Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
B7GA75_PHATC1.590e-3840.99Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6U3VNR1_9STRA1.810e-3842.86Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
I2CR02_NANGC7.090e-3837.84Ubiquitin fusion degradation 1 n=1 Tax=Nannochloro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig129contigEcto-sp13_S_contig129:3209..10049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score599.0
Seed ortholog evalue1.6e-168
Seed eggNOG ortholog2880.D7FNH0
Model size1740
Hectar predicted targeting categorysignal anchor
Exons8
EggNOG free text desc.ER-associated misfolded protein catabolic process
EggNOG OGsCOG5140@1,KOG1816@2759
Ec32 ortholog descriptionUbiquitin fusion degradation protein UFD1
Ec32 orthologEc-01_005490.1
Cds size1155
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig129.2382.1prot_Ecto-sp13_S_contig129.2382.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig129 3631..9886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.8178859-UTR-Ecto-sp13_S_contig129:3208..36301681462689.8178859-UTR-Ecto-sp13_S_contig129:3208..3630Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig129 3209..3630 -
1681462689.9072702-UTR-Ecto-sp13_S_contig129:9886..100491681462689.9072702-UTR-Ecto-sp13_S_contig129:9886..10049Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig129 9887..10049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.8296406-CDS-Ecto-sp13_S_contig129:3630..38371681462689.8296406-CDS-Ecto-sp13_S_contig129:3630..3837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 3631..3837 -
1681462689.840036-CDS-Ecto-sp13_S_contig129:4521..46221681462689.840036-CDS-Ecto-sp13_S_contig129:4521..4622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 4522..4622 -
1681462689.8498607-CDS-Ecto-sp13_S_contig129:5550..56931681462689.8498607-CDS-Ecto-sp13_S_contig129:5550..5693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 5551..5693 -
1681462689.8599524-CDS-Ecto-sp13_S_contig129:6562..66901681462689.8599524-CDS-Ecto-sp13_S_contig129:6562..6690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 6563..6690 -
1681462689.8707612-CDS-Ecto-sp13_S_contig129:7128..72781681462689.8707612-CDS-Ecto-sp13_S_contig129:7128..7278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 7129..7278 -
1681462689.8796268-CDS-Ecto-sp13_S_contig129:8133..82491681462689.8796268-CDS-Ecto-sp13_S_contig129:8133..8249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 8134..8249 -
1681462689.8881857-CDS-Ecto-sp13_S_contig129:8534..86731681462689.8881857-CDS-Ecto-sp13_S_contig129:8534..8673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 8535..8673 -
1681462689.8971453-CDS-Ecto-sp13_S_contig129:9715..98861681462689.8971453-CDS-Ecto-sp13_S_contig129:9715..9886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 9716..9886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig129.2382.1

>prot_Ecto-sp13_S_contig129.2382.1 ID=prot_Ecto-sp13_S_contig129.2382.1|Name=mRNA_Ecto-sp13_S_contig129.2382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=385bp
MATCRKGASGGRRSSQQRQHQRRRHRPHGLWRGMVMANIATTLTAVVLLL
ADPAAGKGAGGITAAQLGKSAAGMAGPSPLKTLEEGVPRAVALAQLEQAR
RTREDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMP
ASILSELMRKQAEIPWQFELKLVRRQGPGKFEPVDVPAPPRAALTGRTEM
PQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASK
IVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVL
ECIDADGKSQEAVCVQDSDVATDFQAALDTPAGRRKPGAKAKSLDEGPSH
KKSRAEPLEEEEEEGDYESDSEEEEEGGWGSDEF*
back to top

mRNA from alignment at Ecto-sp13_S_contig129:3209..10049-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig129.2382.1 ID=mRNA_Ecto-sp13_S_contig129.2382.1|Name=mRNA_Ecto-sp13_S_contig129.2382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6841bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:3209..10049- (Ectocarpus species13 EcNAP12_S_4_19m)
CCATACCAACCAGGCCAGAGCAGAGAGAGAGGGAGAGCACACGGCGGAGA
GGAGAGCCGTGCACATCGTACTGCTGCTATTGTCGAGTCAGGCGACTCTA
TCGGTGAAAGGAATAAACTGCTTTCAACGATTATAACCAGCAGCAGCCGC
AGCCGCTTGACACATGGCAACTTGCCGCAAGGGAGCTAGCGGCGGCAGGC
GGAGCAGTCAGCAGCGGCAGCATCAGCGGCGGAGGCATCGACCTCACGGG
TTGTGGCGCGGTATGGTGATGGCGAATATCGCGACGACGTTAACGGCAGT
TGTGCTTCTGTTGGCTGATCCTGCAGCTGGAAAGGTGAGGTGTAAGCTCC
TGCTGCTCGAGCTTGCACGACATGATCATCCTGCGTCCTTTGTTGCATGG
TACAGACAGAGCATATACGCCGCGCTGTTTTCACCTGGCAGCAGCAAGAT
CTAAGGAAGAACTCATTCGGTTTATCTGCTTGATCTATTCATTCGTTTTT
CACGCCCTGAGTCGATATCCTCACGTACCTGTGTACTGCTACCGACATGG
CTACATACAGGAATGCACAAGTGTACTTTTTGATAGACTATGCAGGAGGC
GAAGCACGAAATCAATCTTTGCCAACTCCCGACGTCTCAGACAATGGTCG
TTTACGCCGACGAAGTCTGTTTGCATTCGTATCGTGATAGCAGCTCTTCA
ACGACATATTTATCTTGAACTAATTATTAAAAGTTGAAAACAACAACAGC
AGCAGCAGCAGCAGTGGGTCCCGGTTTCCTACACTGCTGTACATGTAAGC
AGGCAGGAGAGGGGCAGCGAGGAGGTGATAAGAGTCTCGATAAGTGGGAT
TCCCGATCATGTGTTGCCTGTGTTCATGGCGGACCCGTTCACGCCACGAA
CATGCATCATGGCTGCAGGCGCAACGACCCTCTCCATTGCTGTCGTGCCC
GCGTACAGCAGCAGAAATTTGACGTATATCTCATGCAACGAGCTGCTTTG
GTAGTGGCATCAGTATTTACCCCCTGTGGACGGAAGACGCGACAGCTCCC
CGACAAAACGGGTACTGTACTGCATTACTTGACGGGGGGCAGATATCACC
GCTCTCTTACCGTGCAAGTCCTGAAAGACGAGCGCGTAGGTAGGAGACGT
GAGTGGATGAATCCCGAGCAGACCTGGCTGCATGGCGGAACGATCGAGCA
AGCAAGCCGGTCGCGCCCATCGACGGACGAAGAGCGTTTGCCGGAAGCCA
GAGCACGCACAGAGCTTTTCACACTCGGTGCAGCACTGAATCAACTCCTC
CCCCCTTTACACAACAGCAGCGTCACCCTGTTTCCATGTGATTCAATGAA
CCTCGTACTTTCAATGTGTTGCGCAGGGCGCGGGCGGCATTACCGCGGCA
CAGCTCGGCAAATCGGCGGCAGGGATGGCCGGCCCGTCGCCGCTCAAGAC
CCTCGAAGAGGGAGTTCCAAGGGCGGTGGCCTTGGCCCAGCTTGAGCAGG
CGAGACGCACCCGGGGTTTGTAGCACCCATGGCGTGTCTATCTATGGTTT
GGAGGATGGTTGCATGCCGTGATGATGTACACGGCGAGGGGCGGGGAGGG
TGAATGGTACCCTCAGACAAAGTGCCATTCGACGGCGGTGGCAAAGCGAG
GGTTCGTACTATCGGCGTTAAGGATTATTTTCCGTCTTTGGTGTACCGTT
AAACGGAGCATGAATATGTGCTGCGCAAAGAGAACGCCGTTCTCAACACG
CATCACGGTGTGTGTGTGTCGGGGGGGGGCGCCCTTTTCGCAGGAGATAG
AGGACCTGAACGTGATGCACAAGTTTGACCGGCGGTTAGAGCGGCTCGCG
ATGGTGATGCCGCTGACGGACCAGTTCGATCCCGGAGTGACCCACTTCGC
GCACGAGCACCTGCAGGTTCGGCTTGTTTTTGTTTTTGGTTCACTTGACG
TACCATGTTAGCTTGTTTGGTTGACTCGTATTTTGTCGTCGCGATGGAGA
AAGGAAGCCCTGCACACGCGGGAAGTATGTCGAACAACGATGGAGTGGTT
GATGGACTGCCCGGAGCTGGCTGTCGTGTACACGAGGGACAGAAGCACGA
AAACAGAATATGGCTGTGGCGGTAGCGTGTGTGTGCAAGTCTCGCGGAGC
ACTTATCGCCTTATCTTCCGGATTTTCTGGAGGCTGGGCAGTCCTCTCTT
ACACCGACACGTTACCGAGCAGGGAAAGAATCCCGCACCTCTTCTTTGTT
GGACATGGCGCGAATTCCCCTGTGATCGACTGGCCGCACCAGGCTTTGTC
GTTCTCATCCTACCCTCGCCCTTTCGAACTGACGCATCGCAACTTGGACG
GCCATTCTTGTATTGGTGGCGTAGGTTGCATCACTCTGCTCCCACCGTGC
ATAGCCCATAGAAGTGGTGAAGATGGTTTTGACGCCGCTTCCACCGAAGG
ATTTTTTTTTTCGATACTACTACTGCTTCACTACGTTTTCTGTTGGCCTT
CATGGTTTATAGCAAAGTGTTAGTATGGGTTACGTCCCATCCGGACTACG
CCCCATCCGGATTATGTCCCATCATGATGACCCCGACGAAGCTTTCGGGA
TATGGACGCAGGCGCCACAAAGACAGCCGGCAGTAAGACGGCCAAAAAAA
TCTCGACGATACCTCGTGGTGAATAGGTGACTAACTGCTGATGTCGTCTT
TCGCGATACATATTTGATGACGGTTACTGCTGTACGACGACGCCGGTTTG
CCCCGGCCGGGGTCTGCGCAGGAGGGGGACAAGATCTCTATGCCGGCGTC
TATCCTGTCGGAGCTGATGCGCAAGCAGGCAGAGATCCCGTGGCAGTTCG
AGCTCAAGCTCGTCCGGCGGCAGGGGCCAGGGAAATTCGAACCGGTCGAC
GTGCCGGCGCCTCCGAGAGCGGTGCGATTTCTGTTGCCGATCGATCAGTC
TCTACGATGATCGATCCATCGATCAATGGATCACTCGTAGCGGTTCCGTT
TCGGAAACACCTACGGATGTCGGAGTGCCGAGGAGACACGTTGAATTTCT
CTCCCAAGATACCACACGCGTGGTTAGTCGGGCGGTCTTGAAGGTTACAG
CAGTGGCGAAACATCACGAAAATAACGGATGTAGGTACTTGCAGAGTCGC
ACTTGTTGTGTATTTTAAACCAACCATTTTCCGCTTCTGGCACTCGCGTC
ATTCTGTTTTTGCGGTGTGCGTAGAAAAGCGACAACTTGTGTCCAGTGTA
TGATTGGCATTTCTGTCTTTACTGAACCGAGTACCTGAAAAGGAGACGAA
GTCGCCCTCTTACTTTGACCTCTCTACCTTCGGTGTCTTTTATTTCCCTG
TTTGTGCAGGCGCTAACGGGCAGGACGGAGATGCCCCAGCTGTCGGCCGT
CGCGTGCAGCATCCTGGATGCGAGATCCCCGGAGCAGTTCGTATTCATGC
CCGACTGGATGATGAAGGCGCTGCGCTTGCGACCCAGGTTTGTGGTCCGT
TGCCTTTTTCCCCGAGAATGAAGGTTTACCGAACGGGATATAAACATCAG
TTAACGAAAGAAGCTTCAAACTCAAAAGCAGCGAGAGAGGCCACCGGTAG
GCAGGTAGGCACAGGAAGCACGGGCCTGGTTGTTCGCATCTGTGGAGTCA
CAGTACACCACACGTTCGAATGTGTGGCTTCAAGGATTCATCTAGGTTTT
CGCGCAAACGGTGTATTCATAATTGAACAGTACTGCTAGATGTTCGGCTC
ATGTTGATATTACAGTATGGTAGGTGTAAGGACGTCCGTCGCTATGTGCG
GAGAGTCCTTGTCTTACGTTGGCGAAAGCAGCAGCTACCATAGGCGTAGA
TTCGATCGAGGTTTCCCCCGGGAACATGGTTGCCACCCGCACCGGCACAT
GGGTTGTATGCTTTCTTCATTCAACTGATGGAATGGTTATTTGCGAGGGA
AACTATTAAGCTGTGTTCTCCATCAGACCCTCGCGGTGCCGTGGATCGGA
AAGTCAGACAACTAATGCCTCTGCTTGTTGTGTGGCGGCACTAGTGTGGC
GCAAGTTAGCTTCCCAGATGTGAATCGGCACCCAGATGTGACAGCAGTAC
TACAGCAGATCTGCGAAAATCAAAAACGCGATTGCCGACTCCCCCCTTGA
AATCCCCATCTCCTCCATGAGTTTGGCGACAAAAAAAAACTCTCTCGTGT
CCGAGCCCATTTGTAGTGCTTTTATTCTCTTCCCTTTTTCGCTTTCGCAA
CAACGTTGTTGTCTGGCGTACGCCGACGCCCTCCGCTCGCCACTTGCCCT
ACCCGCCCTCCCGCCCGCCCGCCCCGCCTGCCCGCCCGCCGCGCGTTTGG
AAACAGGGACATCGTGTTGTACCGGCATAAGGACCTCACCAAGGCCAGCA
AGATCGTGCTGCAGCCACACTCCAGCGCGTTCCTCAAGATGTCCAACCAC
CAGGCGGTGATGGAGACAGAGCTACGCCACTACTCGGCTATTACCCGCGG
TGAGATCTCTCGAAGGGGGGGTCGTGCTTGTCTTGCCTGTGCGCTGGCCC
CTAAGTCACTCTCTCGGAATTCTACTGCTGTTGTCTTGTGGTTGCTGGTG
CGTGCATGCACGCCCGCCACACTACAGCAATGCCCTCGTAATTGACATTT
GTTGTCGTTCATCTTTCGCTCCGTTTTTCTGATTCTCGGCTGGCTTCCTT
TGACCGCAGCATGTCATGGCAATCATACCCAAAGCTTTTTCTGTGTCGAC
GGCAGCAACCTGTCATGACCGCTCCCGCGAGCTAGGACGACGAATGTTGC
AGATTGATCTTAGCAACTTCTTGGTGCCACAGACGCATACACACAGTAAT
ATACACTAGGGTATATCTTTTTGAAGGGGTCCAAGTATCGCCGCCAACGC
TGTTTGCCGCAAGCTGCGAGTTCCAAGGGTGGACGCTTGGGATCCCTTTG
CGTCTTTGAAGGCGCGCCCTCACCGTATTTGAAGTATTTGACTGTGCTTG
TTAGCTCGAGTACGCTCGCTTGGAGATCTTCGATGTCTCAAAGAAACCGA
ACGGGCCTGCCCCGGTTGCCTTGGAAGCCATCACATCATAATAAACTGCT
TTTCGGAGTTGAGGGTACTGCTGTTGCGTAAAGAGCATGTTAATTTTTCT
AGCCTGTGCATCGACCAAAGCTGCAAAAACATGCCCAAAATAACCCCCGT
CCGTCCCGAACCGCACTCATCCCTGTTCGCTGACAACGTCAGCTGCTTTT
TCTTTCCCCGAAGTCTTGTTCGTGTCTCGTGGCAGCAGCAGCAGTAGCAG
CAGCAACAGGCTTGTTTCGACGGTCCCGCAGAACAATACTGTCGGTGTTA
CCCTCTTATATACGGGCAGATAACCGTTCCCCACCTAACTCCGTCGTGGA
CGCGGTGCCAAAATCCGACACGAAAAGGCACGACGGTGGCGTTCCGGTAC
CGGAAGACGCTGTACAAGTTTAACGTGCTGGAGTGCATCGACGCCGATGG
AAAGTCCCAGGAGGCGGTGTGCGTGCAGGTGCGAATTGTGCCCTGTGATC
GGACGCTTCGGCAGCTTTGGCGGAGTACGGCCGTGATTCATGTGCTAAAT
TGAAGAATGTAGGATCGATTGTGCCACGGACTTTGTGGGGAGGGGAGGTT
GTCTTGGTAGATTGTATCGGAGGGTTTAGGTCGTACCTGTGGTGCCTCCA
TGCCGATGGGAGAGGGGGGTGGCGCGCATGCAGATCGGGGCTCGGAGGGT
TCGCTGGCCGTAGGAAACACCACGTCTTTGCTTGTCCCGTTTGGGGACCC
CGTGTCCTGGCCTGAGGTGACACTTCGGGGTTAGTATACCACGGTCACGG
TTGTTTCGTGGTGCTAGGGTGGGCAGGAGTTTCATAAAGGGTCGTTGTGC
ATGTATACCGCCGAGACGATGCGTTGTGCATACAACCGATGCTCTTTAGG
TAGTGGCAGAGGCAGGCGCACGGCAGACGTGGTACTGCTGTAGTGCACGC
GTTTTGTTTTTCGAAGCGTTGGTCAAGTCTAGAACGAGCTCAGTGCTGAA
GAGCAACGAGCGAACCAAGAGCATCCTGGCAGCACAGAATTGTGGAAATA
TTTTGTGAGAAGCCTCGTGCCCCCAGTATTCCCCCCGTGCTGCCGTTCTA
GTATGCACCTCTAAAAAGCAAGCCCCCCCCCCCTCTTTTGGCGTGTGCCC
TACCGCTAACAGGACTCGGACGTGGCAACAGACTTCCAGGCGGCACTCGA
TACTCCTGCCGGGAGACGGAAACCAGGAGCTAAGGCGAAATCTCTGGATG
AGGGGCCTTCGCACAAGAAATCGCGGGCAGAACCTCTAGAGGAAGAAGAA
GAGGAGGGGGATTACGAGAGTGACAGCGAAGAGGAGGAGGAGGGGGGCTG
GGGAAGCGATGAGTTCTGATCGGAATTGTGGCGTCCCCGAGTTGGTTGTT
AAGCCGGGGTCATGGGTTGCGGTTGTCGGAATCTCTTTTGCATTGAATTG
TACCGAGGGTGTGTTTTTGTGTAGCTTGCCGCATGCGAGTGGTGTGCTCC
ATTTTGTGATTGTTTCTCCGGTCCTTAAGTTTTCTTCGGTGGCGATAGCG
TGTGTTGCTTTCGCATGCCCCTGAACAATGACATCGAACCGTCGTGCCAG
ATTTTGTTGTAGAATACAAGTGCTCCCTCCGGAATGGGCTGATGAAAGAT
CAATGCCAGTAAGGGGTAATGCAAGATGAAAATAAAGGCAGGCAGCAGGA
CCGGCTGCTAGCTGCAAGCTGTGAAGTTTCCCAAGCTCCAACAACTCATT
GACGTGTTTTTGACTCGAAGAGCCCAGCGAACTTATACGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig129:3209..10049-

>mRNA_Ecto-sp13_S_contig129.2382.1 ID=mRNA_Ecto-sp13_S_contig129.2382.1|Name=mRNA_Ecto-sp13_S_contig129.2382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:3209..10049- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACTTGCCGCAAGGGAGCTAGCGGCGGCAGGCGGAGCAGTCAGCA
GCGGCAGCATCAGCGGCGGAGGCATCGACCTCACGGGTTGTGGCGCGGTA
TGGTGATGGCGAATATCGCGACGACGTTAACGGCAGTTGTGCTTCTGTTG
GCTGATCCTGCAGCTGGAAAGGGCGCGGGCGGCATTACCGCGGCACAGCT
CGGCAAATCGGCGGCAGGGATGGCCGGCCCGTCGCCGCTCAAGACCCTCG
AAGAGGGAGTTCCAAGGGCGGTGGCCTTGGCCCAGCTTGAGCAGGCGAGA
CGCACCCGGGAGGACCTGAACGTGATGCACAAGTTTGACCGGCGGTTAGA
GCGGCTCGCGATGGTGATGCCGCTGACGGACCAGTTCGATCCCGGAGTGA
CCCACTTCGCGCACGAGCACCTGCAGGAGGGGGACAAGATCTCTATGCCG
GCGTCTATCCTGTCGGAGCTGATGCGCAAGCAGGCAGAGATCCCGTGGCA
GTTCGAGCTCAAGCTCGTCCGGCGGCAGGGGCCAGGGAAATTCGAACCGG
TCGACGTGCCGGCGCCTCCGAGAGCGGCGCTAACGGGCAGGACGGAGATG
CCCCAGCTGTCGGCCGTCGCGTGCAGCATCCTGGATGCGAGATCCCCGGA
GCAGTTCGTATTCATGCCCGACTGGATGATGAAGGCGCTGCGCTTGCGAC
CCAGGGACATCGTGTTGTACCGGCATAAGGACCTCACCAAGGCCAGCAAG
ATCGTGCTGCAGCCACACTCCAGCGCGTTCCTCAAGATGTCCAACCACCA
GGCGGTGATGGAGACAGAGCTACGCCACTACTCGGCTATTACCCGCGGCA
CGACGGTGGCGTTCCGGTACCGGAAGACGCTGTACAAGTTTAACGTGCTG
GAGTGCATCGACGCCGATGGAAAGTCCCAGGAGGCGGTGTGCGTGCAGGA
CTCGGACGTGGCAACAGACTTCCAGGCGGCACTCGATACTCCTGCCGGGA
GACGGAAACCAGGAGCTAAGGCGAAATCTCTGGATGAGGGGCCTTCGCAC
AAGAAATCGCGGGCAGAACCTCTAGAGGAAGAAGAAGAGGAGGGGGATTA
CGAGAGTGACAGCGAAGAGGAGGAGGAGGGGGGCTGGGGAAGCGATGAGT
TCTGA
back to top