mRNA_Ecto-sp13_S_contig129.2385.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig129.2385.1
Unique NamemRNA_Ecto-sp13_S_contig129.2385.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig129.2385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig129contigEcto-sp13_S_contig129:16818..17162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.728748-UTR-Ecto-sp13_S_contig129:16817..168411681462689.728748-UTR-Ecto-sp13_S_contig129:16817..16841Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig129 16818..16841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.7373974-CDS-Ecto-sp13_S_contig129:16841..171621681462689.7373974-CDS-Ecto-sp13_S_contig129:16841..17162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 16842..17162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig129.2385.1prot_Ecto-sp13_S_contig129.2385.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig129 16842..17162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig129.2385.1

>prot_Ecto-sp13_S_contig129.2385.1 ID=prot_Ecto-sp13_S_contig129.2385.1|Name=mRNA_Ecto-sp13_S_contig129.2385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MVWADTVKTAIGYYVVAQTSNTIWLPGEQRLPGHFFGRLLDGNEAKGENC
CLMLCAANVVDSSEARRTERPLPETNGLSSHNETAAHTMGEAILSAKSVF
SCVAHS*
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mRNA from alignment at Ecto-sp13_S_contig129:16818..17162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig129.2385.1 ID=mRNA_Ecto-sp13_S_contig129.2385.1|Name=mRNA_Ecto-sp13_S_contig129.2385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:16818..17162+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTTGGAGCAAGATATCAATGTCATGGTTTGGGCCGACACGGTTAAGAC
TGCGATTGGTTATTATGTTGTCGCCCAAACAAGCAACACCATCTGGCTGC
CTGGAGAGCAAAGATTGCCTGGACATTTCTTCGGGCGTTTGTTGGATGGC
AACGAGGCCAAAGGCGAGAACTGCTGTCTCATGCTGTGTGCCGCGAATGT
TGTTGATTCAAGTGAGGCTCGAAGGACGGAGCGACCTCTGCCTGAAACCA
ACGGCTTGTCTTCACACAACGAAACGGCTGCGCACACGATGGGTGAGGCT
ATTCTATCAGCAAAATCAGTTTTTTCCTGTGTTGCTCACTCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig129:16818..17162+

>mRNA_Ecto-sp13_S_contig129.2385.1 ID=mRNA_Ecto-sp13_S_contig129.2385.1|Name=mRNA_Ecto-sp13_S_contig129.2385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:16818..17162+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTGGGCCGACACGGTTAAGACTGCGATTGGTTATTATGTTGTCGC
CCAAACAAGCAACACCATCTGGCTGCCTGGAGAGCAAAGATTGCCTGGAC
ATTTCTTCGGGCGTTTGTTGGATGGCAACGAGGCCAAAGGCGAGAACTGC
TGTCTCATGCTGTGTGCCGCGAATGTTGTTGATTCAAGTGAGGCTCGAAG
GACGGAGCGACCTCTGCCTGAAACCAACGGCTTGTCTTCACACAACGAAA
CGGCTGCGCACACGATGGGTGAGGCTATTCTATCAGCAAAATCAGTTTTT
TCCTGTGTTGCTCACTCTTGA
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