mRNA_Ecto-sp13_S_contig12899.2380.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: D8LH14_ECTSI (PHM7_cyt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH14_ECTSI) HSP 1 Score: 291 bits (745), Expect = 5.610e-90 Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 1
Query: 1 PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSMEEAKNFEDELHLRHPEGGKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDAITTFTTNTDRMSRTTVGNI 438
PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSM+EAKNFEDELHLRHPEGGKFDAR AAMGRYCFLGGCGEQLDLWDEGK+SQFAPFGAGVTSYFKLLKFFSW+FLVVSLCVLPHLSINT+GDAITTFTTNTDRMSRTTVGNI
Sbjct: 90 PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSMKEAKNFEDELHLRHPEGGKFDAREAAMGRYCFLGGCGEQLDLWDEGKISQFAPFGAGVTSYFKLLKFFSWTFLVVSLCVLPHLSINTSGDAITTFTTNTDRMSRTTVGNI 235
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A4D9CV43_9STRA (PHM7_cyt domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV43_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.570e-18 Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 1
Query: 1 PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSMEEAKNFEDELHLRH--PEGGKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDAITTFTTNT-DRMSRTTVGNI 438
P G + LH+ A GR E PW PP +E A+++ + H R P G F + GRYC LGGCGEQLDLWDEG++S+ + +G+ ++++FK K+ +W+ L + LP +NT G T ++RTT+GN+
Sbjct: 184 PPGSSDAKALHAAADCPTPLAAGRELEQ-PWYPPDLELARDYAEWNHPRMGGPGGPLFPLCKTSTGRYCVLGGCGEQLDLWDEGQVSELSIYGSSISNFFKFEKWCAWTSLCLFFIYLPVFLLNTFGSGEPAHGTGRLVSLTRTTLGNL 331
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A7S1ULL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1ULL5_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.630e-18 Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 1
Query: 91 WEPPSMEEAKNFEDELHLRHP----EGGK-FDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDA 381
W PP+++ A+ F +RHP GG+ + G + GR+C GGCGEQLDLW EG +S+ + FG GVT+YFK LK+ +W F ++S+ LP + IN G A
Sbjct: 188 WHPPNVDIAEQF---AKVRHPFKYIRGGEPYPVWGTSTGRHCVHGGCGEQLDLWREGVVSELSKFGPGVTNYFKFLKWATWVFFIMSVIALPMIIINAFGPA 286
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A7S3XM95_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM95_HETAK) HSP 1 Score: 85.5 bits (210), Expect = 4.520e-18 Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 91 WEPPSMEEAKNFEDELHLRHPEGGKFDA-RGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNG 375
W PS E A+ + +H R +G K+ G+ GR+C+LGGCG+Q D ++EG +S+F +G GVT+YFK +K+ W ++S+ +P L+IN NG
Sbjct: 86 WVAPSEELAEVYAARMHPRQIDGSKYPLFGGSTTGRFCWLGGCGQQCDFFNEGMVSEFCQYGVGVTNYFKFIKWCGWVMFMLSIFSVPSLTINKNG 181
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A7S3H9E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9E2_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.080e-17 Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 82 DTPWEPPSMEEAKNFEDELHLRH--PEGGKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDAITTFTTNTDRMSRTTVGNI 438
DTPW P +A F D + R G KF+ GR+C LG GEQLDLW+EG++S+F +G+GVT+YFK +K+ +W F ++++ +P + +N +G T ++RTT GN+
Sbjct: 286 DTPWVRPDNAKAIRFADYVQPRKGGKGGAKFEFSKTTTGRHCCLGNMGEQLDLWEEGQISEFGIYGSGVTNYFKFIKWCTWLFTILAVIAIPIVVLNDSGPH--TGNNGLQSLARTTAGNL 404
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: K0RGI3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RGI3_THAOC) HSP 1 Score: 85.1 bits (209), Expect = 9.890e-17 Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1
Query: 91 WEPPSMEEAKNFEDELHLRHPEG---GKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNG 375
W PS + AK FE + H G K+D GR+CF GCGEQ DLWDEG+ S+F+ +G+GVT+YFK +K+ W L++S LP L IN G
Sbjct: 188 WRKPSWKFAKRFE-RSNRPHRSGQGMDKYDWMSVTTGRHCFATGCGEQFDLWDEGRTSEFSTYGSGVTNYFKFVKWSCWVMLILSTIHLPVLFINLLG 284
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: K0SAW4_THAOC (PHM7_cyt domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SAW4_THAOC) HSP 1 Score: 85.1 bits (209), Expect = 1.920e-16 Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1
Query: 91 WEPPSMEEAKNFEDELHLRHPEG---GKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNG 375
W PS + AK FE + H G K+D GR+CF GCGEQ DLWDEG+ S+F+ +G+GVT+YFK +K+ W L++S LP L IN G
Sbjct: 20 WRKPSWKFAKRFE-RSNRPHRSGQGMDKYDWMSVTTGRHCFATGCGEQFDLWDEGRTSEFSTYGSGVTNYFKFVKWSCWVMLILSTIHLPVLFINLLG 116
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A482RNV3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNV3_9ARCH) HSP 1 Score: 51.6 bits (122), Expect = 3.150e-5 Identity = 28/74 (37.84%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 220 EQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDA-ITTFTTNTDRMSRTTVGNI 438
++ D + EG++S+ A +G G+TSYFK LK +W ++S+ LP + IN+ G A + +FT+ + ++ TT+GN+
Sbjct: 24 KRCDFFCEGRVSELAEYGPGITSYFKTLKALAWLLFMMSIITLPMVIINSFGAAPVPSFTSLS--LAHTTIGNL 95 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12899.2380.1 >prot_Ecto-sp13_S_contig12899.2380.1 ID=prot_Ecto-sp13_S_contig12899.2380.1|Name=mRNA_Ecto-sp13_S_contig12899.2380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSMEEAKNFEDELHLRHback to top mRNA from alignment at Ecto-sp13_S_contig12899:3800..4789+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12899.2380.1 ID=mRNA_Ecto-sp13_S_contig12899.2380.1|Name=mRNA_Ecto-sp13_S_contig12899.2380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12899:3800..4789+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12899:3800..4789+ >mRNA_Ecto-sp13_S_contig12899.2380.1 ID=mRNA_Ecto-sp13_S_contig12899.2380.1|Name=mRNA_Ecto-sp13_S_contig12899.2380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12899:3800..4789+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |