mRNA_Ecto-sp13_S_contig12899.2380.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12899.2380.1
Unique NamemRNA_Ecto-sp13_S_contig12899.2380.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: D8LH14_ECTSI (PHM7_cyt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH14_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 5.610e-90
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 1
Query:    1 PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSMEEAKNFEDELHLRHPEGGKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDAITTFTTNTDRMSRTTVGNI 438
            PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSM+EAKNFEDELHLRHPEGGKFDAR AAMGRYCFLGGCGEQLDLWDEGK+SQFAPFGAGVTSYFKLLKFFSW+FLVVSLCVLPHLSINT+GDAITTFTTNTDRMSRTTVGNI
Sbjct:   90 PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSMKEAKNFEDELHLRHPEGGKFDAREAAMGRYCFLGGCGEQLDLWDEGKISQFAPFGAGVTSYFKLLKFFSWTFLVVSLCVLPHLSINTSGDAITTFTTNTDRMSRTTVGNI 235          
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A4D9CV43_9STRA (PHM7_cyt domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV43_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.570e-18
Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 1
Query:    1 PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSMEEAKNFEDELHLRH--PEGGKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDAITTFTTNT-DRMSRTTVGNI 438
            P G   +  LH+        A GR  E  PW PP +E A+++ +  H R   P G  F     + GRYC LGGCGEQLDLWDEG++S+ + +G+ ++++FK  K+ +W+ L +    LP   +NT G       T     ++RTT+GN+
Sbjct:  184 PPGSSDAKALHAAADCPTPLAAGRELEQ-PWYPPDLELARDYAEWNHPRMGGPGGPLFPLCKTSTGRYCVLGGCGEQLDLWDEGQVSELSIYGSSISNFFKFEKWCAWTSLCLFFIYLPVFLLNTFGSGEPAHGTGRLVSLTRTTLGNL 331          
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A7S1ULL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1ULL5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.630e-18
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 1
Query:   91 WEPPSMEEAKNFEDELHLRHP----EGGK-FDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDA 381
            W PP+++ A+ F     +RHP     GG+ +   G + GR+C  GGCGEQLDLW EG +S+ + FG GVT+YFK LK+ +W F ++S+  LP + IN  G A
Sbjct:  188 WHPPNVDIAEQF---AKVRHPFKYIRGGEPYPVWGTSTGRHCVHGGCGEQLDLWREGVVSELSKFGPGVTNYFKFLKWATWVFFIMSVIALPMIIINAFGPA 286          
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A7S3XM95_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM95_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 4.520e-18
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   91 WEPPSMEEAKNFEDELHLRHPEGGKFDA-RGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNG 375
            W  PS E A+ +   +H R  +G K+    G+  GR+C+LGGCG+Q D ++EG +S+F  +G GVT+YFK +K+  W   ++S+  +P L+IN NG
Sbjct:   86 WVAPSEELAEVYAARMHPRQIDGSKYPLFGGSTTGRFCWLGGCGQQCDFFNEGMVSEFCQYGVGVTNYFKFIKWCGWVMFMLSIFSVPSLTINKNG 181          
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A7S3H9E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9E2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.080e-17
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   82 DTPWEPPSMEEAKNFEDELHLRH--PEGGKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDAITTFTTNTDRMSRTTVGNI 438
            DTPW  P   +A  F D +  R     G KF+      GR+C LG  GEQLDLW+EG++S+F  +G+GVT+YFK +K+ +W F ++++  +P + +N +G    T       ++RTT GN+
Sbjct:  286 DTPWVRPDNAKAIRFADYVQPRKGGKGGAKFEFSKTTTGRHCCLGNMGEQLDLWEEGQISEFGIYGSGVTNYFKFIKWCTWLFTILAVIAIPIVVLNDSGPH--TGNNGLQSLARTTAGNL 404          
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: K0RGI3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RGI3_THAOC)

HSP 1 Score: 85.1 bits (209), Expect = 9.890e-17
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   91 WEPPSMEEAKNFEDELHLRHPEG---GKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNG 375
            W  PS + AK FE   +  H  G    K+D      GR+CF  GCGEQ DLWDEG+ S+F+ +G+GVT+YFK +K+  W  L++S   LP L IN  G
Sbjct:  188 WRKPSWKFAKRFE-RSNRPHRSGQGMDKYDWMSVTTGRHCFATGCGEQFDLWDEGRTSEFSTYGSGVTNYFKFVKWSCWVMLILSTIHLPVLFINLLG 284          
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: K0SAW4_THAOC (PHM7_cyt domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SAW4_THAOC)

HSP 1 Score: 85.1 bits (209), Expect = 1.920e-16
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   91 WEPPSMEEAKNFEDELHLRHPEG---GKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNG 375
            W  PS + AK FE   +  H  G    K+D      GR+CF  GCGEQ DLWDEG+ S+F+ +G+GVT+YFK +K+  W  L++S   LP L IN  G
Sbjct:   20 WRKPSWKFAKRFE-RSNRPHRSGQGMDKYDWMSVTTGRHCFATGCGEQFDLWDEGRTSEFSTYGSGVTNYFKFVKWSCWVMLILSTIHLPVLFINLLG 116          
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Match: A0A482RNV3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNV3_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 3.150e-5
Identity = 28/74 (37.84%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  220 EQLDLWDEGKMSQFAPFGAGVTSYFKLLKFFSWSFLVVSLCVLPHLSINTNGDA-ITTFTTNTDRMSRTTVGNI 438
            ++ D + EG++S+ A +G G+TSYFK LK  +W   ++S+  LP + IN+ G A + +FT+ +  ++ TT+GN+
Sbjct:   24 KRCDFFCEGRVSELAEYGPGITSYFKTLKALAWLLFMMSIITLPMVIINSFGAAPVPSFTSLS--LAHTTIGNL 95          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12899.2380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LH14_ECTSI5.610e-9096.58PHM7_cyt domain-containing protein n=2 Tax=Ectocar... [more]
A0A4D9CV43_9STRA2.570e-1836.91PHM7_cyt domain-containing protein n=3 Tax=Monodop... [more]
A0A7S1ULL5_9STRA2.630e-1845.10Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3XM95_HETAK4.520e-1841.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3H9E2_9STRA3.080e-1738.84Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
K0RGI3_THAOC9.890e-1745.92Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
K0SAW4_THAOC1.920e-1645.92PHM7_cyt domain-containing protein n=1 Tax=Thalass... [more]
A0A482RNV3_9ARCH3.150e-537.84Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12899contigEcto-sp13_S_contig12899:3800..4789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score294.3
Seed ortholog evalue3.2e-77
Seed eggNOG ortholog2880.D8LH14
Model size438
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CY1P@1,2S1C7@2759
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-06_010840.1
Cds size438
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.6900234-CDS-Ecto-sp13_S_contig12899:3799..40421681462689.6900234-CDS-Ecto-sp13_S_contig12899:3799..4042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12899 3800..4042 +
1681462689.7029521-CDS-Ecto-sp13_S_contig12899:4594..47891681462689.7029521-CDS-Ecto-sp13_S_contig12899:4594..4789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12899 4595..4789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12899.2380.1prot_Ecto-sp13_S_contig12899.2380.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12899 3800..4789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12899.2380.1

>prot_Ecto-sp13_S_contig12899.2380.1 ID=prot_Ecto-sp13_S_contig12899.2380.1|Name=mRNA_Ecto-sp13_S_contig12899.2380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
PDGHVKSNPLHSPRGVMNAAARGRISEDTPWEPPSMEEAKNFEDELHLRH
PEGGKFDARGAAMGRYCFLGGCGEQLDLWDEGKMSQFAPFGAGVTSYFKL
LKFFSWSFLVVSLCVLPHLSINTNGDAITTFTTNTDRMSRTTVGNI
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mRNA from alignment at Ecto-sp13_S_contig12899:3800..4789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12899.2380.1 ID=mRNA_Ecto-sp13_S_contig12899.2380.1|Name=mRNA_Ecto-sp13_S_contig12899.2380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12899:3800..4789+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGACGGCCACGTCAAATCGAACCCCTTGCATTCCCCAAGGGGGGTCAT GAACGCGGCAGCTCGAGGTCGCATCTCCGAAGACACGCCGTGGGAGCCAC CGTCCATGGAGGAGGCCAAGAATTTCGAGGACGAGCTGCACCTCAGGCAC CCCGAGGGGGGTAAGTTCGACGCCCGGGGAGCTGCGATGGGGCGGTATTG CTTTCTTGGGGGTTGCGGGGAGCAGCTTGACCTCTGGGATGAGGTAAGAA CGAGGGCTCCTTTGTGTCTCTGAGTGGTTGACAACGAGTTGTTCTCCTTG GCGTTCATTCAATGTAACCTCTCGAAGCTGACTCTTGGTCGTGGTGTTGT GCTCTGTATGTCGACACATGCATAGCCGGGTATCGGGCGCCAATGGCATT GTACTCTGTGTGTCTTGACGCGGATTGCGGTATGTTGCTCTTGAGCTGAT TTCCTTTCTCCTCTATGTACACTTGTCGAGTGCAGGTTAGACAACACACG ACTTACCCGTCGTAACAGCATCAGCAATGACAAACGTGACAGTGGTGCAT CACCCTCCGCTCCGTCGTTCTTTCCTGTCTACCTTATACTCTTTGCTTTC ATTTTCCCGCGCATTTGTACCGCTCCTCGGCCTACTCGACGGGTCTTGTC ATGCCATGGCGTTCCGCTGCCTTCCGCTGCAATTCTTTCGTATCCGAACA CACGGCACCAACATCCACCATCCGAACACCCCGTTAACCGCCCTAGCCCC ACCCGACAACGCGCTATACCACTGCATCGTGAACGACAAAACCAGGGCAA GATGAGCCAGTTCGCGCCCTTCGGGGCGGGCGTGACGTCATACTTCAAGC TGCTCAAGTTCTTCTCGTGGTCGTTCCTGGTGGTGTCCTTGTGCGTCCTG CCGCACCTGTCCATCAACACCAACGGAGACGCCATCACGACCTTCACGAC CAACACGGACAGGATGTCGCGGACGACGGTGGGAAACATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12899:3800..4789+

>mRNA_Ecto-sp13_S_contig12899.2380.1 ID=mRNA_Ecto-sp13_S_contig12899.2380.1|Name=mRNA_Ecto-sp13_S_contig12899.2380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12899:3800..4789+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGACGGCCACGTCAAATCGAACCCCTTGCATTCCCCAAGGGGGGTCAT
GAACGCGGCAGCTCGAGGTCGCATCTCCGAAGACACGCCGTGGGAGCCAC
CGTCCATGGAGGAGGCCAAGAATTTCGAGGACGAGCTGCACCTCAGGCAC
CCCGAGGGGGGTAAGTTCGACGCCCGGGGAGCTGCGATGGGGCGGTATTG
CTTTCTTGGGGGTTGCGGGGAGCAGCTTGACCTCTGGGATGAGGGCAAGA
TGAGCCAGTTCGCGCCCTTCGGGGCGGGCGTGACGTCATACTTCAAGCTG
CTCAAGTTCTTCTCGTGGTCGTTCCTGGTGGTGTCCTTGTGCGTCCTGCC
GCACCTGTCCATCAACACCAACGGAGACGCCATCACGACCTTCACGACCA
ACACGGACAGGATGTCGCGGACGACGGTGGGAAACATC
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