prot_Ecto-sp13_S_contig12880.2372.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12880.2372.1
Unique Nameprot_Ecto-sp13_S_contig12880.2372.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length745
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12880.2372.1 vs. uniprot
Match: D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI)

HSP 1 Score: 823 bits (2125), Expect = 2.890e-292
Identity = 550/655 (83.97%), Postives = 558/655 (85.19%), Query Frame = 0 
Query:   99 MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXXGAAKLFQHVFNFDEHQPYLVGDGGGYDGTDNHYHRPQXXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPADAAPAAVTCGLVRVPSGGRFGAGKKKNEIAAFRPELLYNIPPXXXPEVSYAAPLQVPMAPLRQPSVGRGLFSSSP-RGRVMIQSAERSPAAAAARHVAAATY-SKEENSNNIPVEFSPSGGGAMNTAATTT---PLTGADAHFSREYDDERYAFLRRQEAALAAGARYITGGVILEPAAWSAAVDWLSRLHAAAPAASGGSEPLSLETLFLAVNLMDRFLATPQGAKTVWGDGGGGVLLLGPAVKLAGAACLALASKYQDTQAASLWGVAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DFFGVLGAGDSLSLGXXXXXXXXXXXX-NADVRAARKELAATEMQVASALGFRLTVPTSMSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXXSGDWAGAALPEHAGNSLFGAGGGHPAIAAL 744
            MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXX AAKLFQ VFNFDEHQPYLVGDGGGY           XXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPA+AAP AVTCGLVRVPSGGRFGAGKK NEIAAFRPELLYNIPPXXX EVSYAA LQVPMAPLRQPS GR L+SSSP RGRVMIQSAERSPAAAAAR VA ATY +KEENSNNIPVEFSPS               PLTGADAH SREYDDER+AFLRRQEAALAAGARYITGGV+++PAA SAAVDWLSRLH                                 GAKTVWGDGGGGVLLLGPAVKLAGAACL LASKYQD             XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DFFGVLGAGDSL L XXXXXXXXXXXX NADVRAARKELAATEMQVASALGFRLTVPTS+SFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXX  DWAGAA PEHA NSLFGAGGGHPAIAAL
Sbjct:    1 MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXXXAAKLFQPVFNFDEHQPYLVGDGGGY--XXXXXXXXXXXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPAEAAPVAVTCGLVRVPSGGRFGAGKK-NEIAAFRPELLYNIPPXXXXEVSYAASLQVPMAPLRQPSGGRRLYSSSPPRGRVMIQSAERSPAAAAARLVAVATYLNKEENSNNIPVEFSPSXXXXXXXXXXXXXXXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYITGGVVVDPAARSAAVDWLSRLH---------------------------------GAKTVWGDGGGGVLLLGPAVKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFFGVLGAGDSLGLXXXXXXXXXXXXXXNADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXXX-DWAGAAFPEHADNSLFGAGGGHPAIAAL 618
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12880.2372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRC5_ECTSI2.890e-29283.97Cyclin_C domain-containing protein n=2 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004367Cyclin, C-terminal domainSMARTSM01332Cyclin_C_2coord: 582..702
e-value: 6.5E-12
score: 55.6
IPR004367Cyclin, C-terminal domainPFAMPF02984Cyclin_Ccoord: 582..681
e-value: 1.7E-8
score: 34.6
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 379..491
e-value: 2.9E-7
score: 30.3
NoneNo IPR availableGENE3D1.10.472.10coord: 392..506
e-value: 1.1E-8
score: 37.0
NoneNo IPR availableGENE3D1.10.472.10coord: 571..689
e-value: 3.4E-13
score: 51.8
IPR039361CyclinPANTHERPTHR10177CYCLINEcoord: 400..680
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 566..681
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 366..490

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12880contigEcto-sp13_S_contig12880:2222..4456 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12880.2372.1mRNA_Ecto-sp13_S_contig12880.2372.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12880 2004..4648 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12880.2372.1 ID=prot_Ecto-sp13_S_contig12880.2372.1|Name=mRNA_Ecto-sp13_S_contig12880.2372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=745bp
MSLLLQEDAARYIDSETTNVSAGMKASATWVPASWGGQQQGAAAAAAAAR
DGDELFFGGGGGSSGSASDEKQQQYGSSSRGGELRRVDSTVIDDSDEEME
PFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEAAASSSSSGSSHSGGA
AKLFQHVFNFDEHQPYLVGDGGGYDGTDNHYHRPQQQRQQQQQQSQDMPM
IVPHDPILDAIFTPCRAVLPSTHHYHHPADAAPAAVTCGLVRVPSGGRFG
AGKKKNEIAAFRPELLYNIPPPPPPEVSYAAPLQVPMAPLRQPSVGRGLF
SSSPRGRVMIQSAERSPAAAAARHVAAATYSKEENSNNIPVEFSPSGGGA
MNTAATTTPLTGADAHFSREYDDERYAFLRRQEAALAAGARYITGGVILE
PAAWSAAVDWLSRLHAAAPAASGGSEPLSLETLFLAVNLMDRFLATPQGA
KTVWGDGGGGVLLLGPAVKLAGAACLALASKYQDTQAASLWGVAAASISS
STSSSQPPLRLGGGADSGGGVGGGGGDFFGVLGAGDSLSLGGGGGSGSGG
GGGNADVRAARKELAATEMQVASALGFRLTVPTSMSFLGVFLRRAEGLGY
VLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTP
GAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSS
PAAAGAGGEGGGGGSGDWAGAALPEHAGNSLFGAGGGHPAIAAL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004367Cyclin_C-dom
IPR006671Cyclin_N
IPR039361Cyclin
IPR036915Cyclin-like_sf