mRNA_Ecto-sp13_S_contig12880.2372.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12880.2372.1
Unique NamemRNA_Ecto-sp13_S_contig12880.2372.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12880.2372.1 vs. uniprot
Match: D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI)

HSP 1 Score: 822 bits (2123), Expect = 7.760e-290
Identity = 550/655 (83.97%), Postives = 558/655 (85.19%), Query Frame = 3 
Query:  513 MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXXGAAKLFQHVFNFDEHQPYLVGDGGGYDGTDNHYHRPQXXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPADAAPAAVTCGLVRVPSGGRFGAGKKKNEIAAFRPELLYNIPPXXXPEVSYAAPLQVPMAPLRQPSVGRGLFSSSP-RGRVMIQSAERSPAAAAARHVAAATY-SKEENSNNIPVEFSPSGGGAMNTAATTT---PLTGADAHFSREYDDERYAFLRRQEAALAAGARYITGGVILEPAAWSAAVDWLSRLHAAAPAASGGSEPLSLETLFLAVNLMDRFLATPQGAKTVWGDGGGGVLLLGPAVKLAGAACLALASKYQDTQAASLWGVAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DFFGVLGAGDSLSLGXXXXXXXXXXXX-NADVRAARKELAATEMQVASALGFRLTVPTSMSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXXSGDWAGAALPEHAGNSLFGAGGGHPAIAAL 2450
            MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXX AAKLFQ VFNFDEHQPYLVGDGGGY           XXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPA+AAP AVTCGLVRVPSGGRFGAGKK NEIAAFRPELLYNIPPXXX EVSYAA LQVPMAPLRQPS GR L+SSSP RGRVMIQSAERSPAAAAAR VA ATY +KEENSNNIPVEFSPS               PLTGADAH SREYDDER+AFLRRQEAALAAGARYITGGV+++PAA SAAVDWLSRLH                                 GAKTVWGDGGGGVLLLGPAVKLAGAACL LASKYQD             XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DFFGVLGAGDSL L XXXXXXXXXXXX NADVRAARKELAATEMQVASALGFRLTVPTS+SFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXX  DWAGAA PEHA NSLFGAGGGHPAIAAL
Sbjct:    1 MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXXXAAKLFQPVFNFDEHQPYLVGDGGGY--XXXXXXXXXXXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPAEAAPVAVTCGLVRVPSGGRFGAGKK-NEIAAFRPELLYNIPPXXXXEVSYAASLQVPMAPLRQPSGGRRLYSSSPPRGRVMIQSAERSPAAAAARLVAVATYLNKEENSNNIPVEFSPSXXXXXXXXXXXXXXXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYITGGVVVDPAARSAAVDWLSRLH---------------------------------GAKTVWGDGGGGVLLLGPAVKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFFGVLGAGDSLGLXXXXXXXXXXXXXXNADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXXX-DWAGAAFPEHADNSLFGAGGGHPAIAAL 618
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12880.2372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRC5_ECTSI7.760e-29083.97Cyclin_C domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12880contigEcto-sp13_S_contig12880:2004..4648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2645
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionCyclin, C-terminal domain
Ec32 orthologEc-06_003040.1
Cds size2235
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.1600246-UTR-Ecto-sp13_S_contig12880:2003..22211681462689.1600246-UTR-Ecto-sp13_S_contig12880:2003..2221Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12880 2004..2221 +
1681462689.1942918-UTR-Ecto-sp13_S_contig12880:4456..46481681462689.1942918-UTR-Ecto-sp13_S_contig12880:4456..4648Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12880 4457..4648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.1850502-CDS-Ecto-sp13_S_contig12880:2221..44561681462689.1850502-CDS-Ecto-sp13_S_contig12880:2221..4456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12880 2222..4456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12880.2372.1prot_Ecto-sp13_S_contig12880.2372.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12880 2222..4456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12880.2372.1

>prot_Ecto-sp13_S_contig12880.2372.1 ID=prot_Ecto-sp13_S_contig12880.2372.1|Name=mRNA_Ecto-sp13_S_contig12880.2372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=745bp
MSLLLQEDAARYIDSETTNVSAGMKASATWVPASWGGQQQGAAAAAAAAR
DGDELFFGGGGGSSGSASDEKQQQYGSSSRGGELRRVDSTVIDDSDEEME
PFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEAAASSSSSGSSHSGGA
AKLFQHVFNFDEHQPYLVGDGGGYDGTDNHYHRPQQQRQQQQQQSQDMPM
IVPHDPILDAIFTPCRAVLPSTHHYHHPADAAPAAVTCGLVRVPSGGRFG
AGKKKNEIAAFRPELLYNIPPPPPPEVSYAAPLQVPMAPLRQPSVGRGLF
SSSPRGRVMIQSAERSPAAAAARHVAAATYSKEENSNNIPVEFSPSGGGA
MNTAATTTPLTGADAHFSREYDDERYAFLRRQEAALAAGARYITGGVILE
PAAWSAAVDWLSRLHAAAPAASGGSEPLSLETLFLAVNLMDRFLATPQGA
KTVWGDGGGGVLLLGPAVKLAGAACLALASKYQDTQAASLWGVAAASISS
STSSSQPPLRLGGGADSGGGVGGGGGDFFGVLGAGDSLSLGGGGGSGSGG
GGGNADVRAARKELAATEMQVASALGFRLTVPTSMSFLGVFLRRAEGLGY
VLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTP
GAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSS
PAAAGAGGEGGGGGSGDWAGAALPEHAGNSLFGAGGGHPAIAAL*
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mRNA from alignment at Ecto-sp13_S_contig12880:2004..4648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12880.2372.1 ID=mRNA_Ecto-sp13_S_contig12880.2372.1|Name=mRNA_Ecto-sp13_S_contig12880.2372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12880:2004..4648+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCACGAGCAGAACAAGCTCCCAAACTTTCCCGCCAACGCCGATAATCACG
CCGTCGGTGGGCGTCCCCCCCTCGCACCCCAACCACAAGTCCCGCTCCTG
GGCTTGTCGTCGTCGCTCAGCATGTGCTGAGTTTACCCCAACGCTGGGGT
TGGCCCCCAAAGGGCGGTCTGGTCGTAGACAGGTTGAGGTGGAGGAGGAG
GAGGGTTCGCGTTCGTTGATGTCTCTGCTGCTACAGGAGGACGCTGCTCG
CTACATCGACTCCGAGACCACGAATGTTTCTGCTGGCATGAAGGCGTCAG
CGACGTGGGTCCCGGCGTCGTGGGGTGGGCAGCAGCAGGGCGCGGCCGCA
GCGGCGGCGGCGGCGCGTGATGGCGATGAGTTATTTTTCGGTGGTGGCGG
CGGCAGCAGCGGCAGCGCGAGTGACGAGAAGCAGCAGCAATACGGTAGTA
GCAGCCGCGGGGGGGAGCTTCGACGGGTGGACAGCACCGTGATCGACGAC
TCGGACGAGGAGATGGAGCCCTTCGACGCGGAGCGCTTCGTCGACCGCCT
GGTGGAGGACCCCGCTCCCACCGCGTGGGGGCGCGGGGGTTTGGTCGGGG
GCGGCGGGCGCGTGTGGGAGGCGGCTGCTTCCTCGTCGTCATCGGGTTCC
TCGCACAGTGGTGGTGCGGCGAAACTCTTCCAGCACGTCTTCAATTTTGA
CGAGCACCAGCCCTACTTGGTCGGCGACGGCGGCGGCTACGACGGCACGG
ACAACCACTACCACCGCCCGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAG
AGCCAGGACATGCCGATGATCGTGCCCCATGATCCCATCCTCGACGCTAT
CTTCACGCCGTGTCGGGCGGTTCTGCCTTCGACCCATCATTATCATCATC
CTGCCGATGCTGCTCCCGCGGCGGTTACGTGTGGGTTGGTCAGAGTTCCA
TCTGGAGGTCGGTTTGGGGCCGGCAAGAAGAAGAACGAAATCGCCGCTTT
TCGCCCCGAGCTCCTCTACAACATCCCGCCGCCGCCGCCGCCGGAGGTGT
CGTACGCCGCCCCCCTACAGGTGCCGATGGCGCCCTTGCGGCAGCCGTCC
GTCGGCCGCGGGCTTTTTTCTTCCTCTCCTCGGGGCAGAGTGATGATCCA
GTCAGCAGAACGTTCTCCGGCGGCAGCGGCGGCGCGGCATGTTGCCGCCG
CCACGTACTCGAAGGAGGAGAATTCCAACAACATTCCTGTGGAATTTTCT
CCCAGCGGCGGCGGCGCGATGAACACGGCTGCTACTACTACCCCGCTCAC
GGGAGCCGACGCCCACTTCTCCCGCGAGTACGACGACGAGAGGTACGCTT
TCCTCCGCCGGCAGGAGGCCGCGCTCGCGGCGGGGGCCCGGTACATCACG
GGCGGGGTCATCCTTGAGCCCGCCGCTTGGTCGGCGGCGGTGGACTGGCT
CTCGCGATTGCACGCGGCTGCCCCCGCCGCCTCCGGCGGCAGCGAGCCGC
TGTCGCTGGAGACCCTGTTCCTTGCGGTGAACTTGATGGACCGATTCCTG
GCAACGCCTCAGGGAGCGAAGACCGTGTGGGGCGACGGCGGAGGAGGCGT
GCTGCTGCTAGGGCCAGCGGTCAAGCTCGCGGGCGCGGCGTGCCTCGCGC
TCGCCTCCAAGTACCAGGACACGCAGGCGGCCTCTCTCTGGGGCGTGGCG
GCGGCTTCCATCTCCAGCAGCACGTCGTCGTCGCAGCCGCCGCTCCGTCT
TGGGGGTGGCGCCGACAGCGGCGGCGGGGTCGGAGGCGGAGGCGGCGACT
TCTTCGGCGTCCTTGGAGCCGGAGACAGCCTCAGCCTCGGCGGCGGCGGC
GGCAGCGGCAGCGGCGGCGGAGGCGGTAACGCAGACGTGCGCGCGGCGCG
GAAGGAGCTGGCGGCGACGGAGATGCAGGTGGCCTCCGCGCTCGGCTTCC
GCCTGACGGTGCCGACCTCCATGTCCTTCCTCGGTGTGTTCCTCCGCCGG
GCGGAGGGACTAGGGTACGTGCTGGCCGACGGCCCCGGGCGGGAGCGGGT
GCGTAGGGAGGCCGAGCAGATCCTGCTCTGCATGCTGCGGGAGTCCTGCT
CGCTGGAGCACCCACCGTCGGCGTTGGCGGCCTCCGCCCTCTACTGGGCG
TCCTGCGTGACCACTCCGGGAGCGGCCCCGCCGACGTCGTTCGCCTTCCT
GGCTGTGACGGGCTACGAGCTGGAGCAGCTCTGCTGCTGCCTGAGGGACA
TGGAGGCCGTCAGGACCGGGGGCGGGAGGCGGTACGACGGCGCGGGCTCC
TTCGCCTCCTGCTCATCTCCGGCTGCGGCTGGTGCTGGCGGGGAGGGCGG
CGGCGGTGGCAGCGGCGATTGGGCTGGCGCTGCGCTCCCGGAGCACGCCG
GTAACTCGCTGTTCGGTGCTGGAGGCGGGCACCCCGCGATTGCGGCGCTG
TAGGAGAGAGGTGGGGCGGCGGTGCCGACGCGTGCAGCAGCAGGAAGATG
AGGGCACAGGAGGGCGCGGGGCATGACAGCCGACAAATCAATGGCTGTCG
CCGAAAACCGCGCCGCGAGCGGAAAGGGGGCGCGGAGGGCGTCGGGTGGG
GAGAAGGGACCAAAAATGCACACGAACAGAGTCAGGACGGAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12880:2004..4648+

>mRNA_Ecto-sp13_S_contig12880.2372.1 ID=mRNA_Ecto-sp13_S_contig12880.2372.1|Name=mRNA_Ecto-sp13_S_contig12880.2372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12880:2004..4648+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTGCTGCTACAGGAGGACGCTGCTCGCTACATCGACTCCGAGAC
CACGAATGTTTCTGCTGGCATGAAGGCGTCAGCGACGTGGGTCCCGGCGT
CGTGGGGTGGGCAGCAGCAGGGCGCGGCCGCAGCGGCGGCGGCGGCGCGT
GATGGCGATGAGTTATTTTTCGGTGGTGGCGGCGGCAGCAGCGGCAGCGC
GAGTGACGAGAAGCAGCAGCAATACGGTAGTAGCAGCCGCGGGGGGGAGC
TTCGACGGGTGGACAGCACCGTGATCGACGACTCGGACGAGGAGATGGAG
CCCTTCGACGCGGAGCGCTTCGTCGACCGCCTGGTGGAGGACCCCGCTCC
CACCGCGTGGGGGCGCGGGGGTTTGGTCGGGGGCGGCGGGCGCGTGTGGG
AGGCGGCTGCTTCCTCGTCGTCATCGGGTTCCTCGCACAGTGGTGGTGCG
GCGAAACTCTTCCAGCACGTCTTCAATTTTGACGAGCACCAGCCCTACTT
GGTCGGCGACGGCGGCGGCTACGACGGCACGGACAACCACTACCACCGCC
CGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGAGCCAGGACATGCCGATG
ATCGTGCCCCATGATCCCATCCTCGACGCTATCTTCACGCCGTGTCGGGC
GGTTCTGCCTTCGACCCATCATTATCATCATCCTGCCGATGCTGCTCCCG
CGGCGGTTACGTGTGGGTTGGTCAGAGTTCCATCTGGAGGTCGGTTTGGG
GCCGGCAAGAAGAAGAACGAAATCGCCGCTTTTCGCCCCGAGCTCCTCTA
CAACATCCCGCCGCCGCCGCCGCCGGAGGTGTCGTACGCCGCCCCCCTAC
AGGTGCCGATGGCGCCCTTGCGGCAGCCGTCCGTCGGCCGCGGGCTTTTT
TCTTCCTCTCCTCGGGGCAGAGTGATGATCCAGTCAGCAGAACGTTCTCC
GGCGGCAGCGGCGGCGCGGCATGTTGCCGCCGCCACGTACTCGAAGGAGG
AGAATTCCAACAACATTCCTGTGGAATTTTCTCCCAGCGGCGGCGGCGCG
ATGAACACGGCTGCTACTACTACCCCGCTCACGGGAGCCGACGCCCACTT
CTCCCGCGAGTACGACGACGAGAGGTACGCTTTCCTCCGCCGGCAGGAGG
CCGCGCTCGCGGCGGGGGCCCGGTACATCACGGGCGGGGTCATCCTTGAG
CCCGCCGCTTGGTCGGCGGCGGTGGACTGGCTCTCGCGATTGCACGCGGC
TGCCCCCGCCGCCTCCGGCGGCAGCGAGCCGCTGTCGCTGGAGACCCTGT
TCCTTGCGGTGAACTTGATGGACCGATTCCTGGCAACGCCTCAGGGAGCG
AAGACCGTGTGGGGCGACGGCGGAGGAGGCGTGCTGCTGCTAGGGCCAGC
GGTCAAGCTCGCGGGCGCGGCGTGCCTCGCGCTCGCCTCCAAGTACCAGG
ACACGCAGGCGGCCTCTCTCTGGGGCGTGGCGGCGGCTTCCATCTCCAGC
AGCACGTCGTCGTCGCAGCCGCCGCTCCGTCTTGGGGGTGGCGCCGACAG
CGGCGGCGGGGTCGGAGGCGGAGGCGGCGACTTCTTCGGCGTCCTTGGAG
CCGGAGACAGCCTCAGCCTCGGCGGCGGCGGCGGCAGCGGCAGCGGCGGC
GGAGGCGGTAACGCAGACGTGCGCGCGGCGCGGAAGGAGCTGGCGGCGAC
GGAGATGCAGGTGGCCTCCGCGCTCGGCTTCCGCCTGACGGTGCCGACCT
CCATGTCCTTCCTCGGTGTGTTCCTCCGCCGGGCGGAGGGACTAGGGTAC
GTGCTGGCCGACGGCCCCGGGCGGGAGCGGGTGCGTAGGGAGGCCGAGCA
GATCCTGCTCTGCATGCTGCGGGAGTCCTGCTCGCTGGAGCACCCACCGT
CGGCGTTGGCGGCCTCCGCCCTCTACTGGGCGTCCTGCGTGACCACTCCG
GGAGCGGCCCCGCCGACGTCGTTCGCCTTCCTGGCTGTGACGGGCTACGA
GCTGGAGCAGCTCTGCTGCTGCCTGAGGGACATGGAGGCCGTCAGGACCG
GGGGCGGGAGGCGGTACGACGGCGCGGGCTCCTTCGCCTCCTGCTCATCT
CCGGCTGCGGCTGGTGCTGGCGGGGAGGGCGGCGGCGGTGGCAGCGGCGA
TTGGGCTGGCGCTGCGCTCCCGGAGCACGCCGGTAACTCGCTGTTCGGTG
CTGGAGGCGGGCACCCCGCGATTGCGGCGCTGTAG
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