Homology
BLAST of mRNA_Ecto-sp13_S_contig10211.235.1 vs. uniprot
Match:
D7G6U5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U5_ECTSI)
HSP 1 Score: 76.6 bits (187), Expect = 1.670e-14
Identity = 39/51 (76.47%), Postives = 41/51 (80.39%), Query Frame = 3
Query: 3 RRKMQRNGWSCAPGLLATVDHSASIVAAEELFCVENGPGFE*FVRALAAAV 155
RRKM R G +CAP LLATVDHSASIV AEELF VENGPG E F+RALA V
Sbjct: 151 RRKMHRIGSTCAPDLLATVDHSASIVVAEELFSVENGPGLEQFLRALAEPV 201
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10211.235.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.67e-14 / Id = 76.47 Sequence D7G6U5_ECTSI
Match Name E-value Identity Description
D7G6U5_ECTSI 1.670e-14 76.47 MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 62.4 Seed ortholog evalue 5.4e-08 Seed eggNOG ortholog 2880.D7G6U5 Preferred name SV2A Model size 250 KEGG ko ko:K06258 KEGG TC 2.A.1.22 KEGG Pathway ko04512,map04512 Hectar predicted targeting category no signal peptide or anchor GOs GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005911,GO:0006810,GO:0006836,GO:0006873,GO:0006874,GO:0006875,GO:0007154,GO:0007267,GO:0007268,GO:0008021,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0014052,GO:0016020,GO:0016021,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030003,GO:0030054,GO:0030133,GO:0030285,GO:0030424,GO:0030425,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031410,GO:0031594,GO:0031982,GO:0032879,GO:0032890,GO:0033267,GO:0036477,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043679,GO:0044070,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0048786,GO:0048878,GO:0050789,GO:0050801,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051588,GO:0051952,GO:0051955,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070382,GO:0071944,GO:0072503,GO:0072507,GO:0097447,GO:0097458,GO:0097708,GO:0098563,GO:0098588,GO:0098771,GO:0098793,GO:0098805,GO:0098916,GO:0099501,GO:0099503,GO:0099536,GO:0099537,GO:0120025,GO:0120038,GO:0150034 Exons 1 EggNOG free text desc. solute carrier family 22 EggNOG OGs KOG0255@1,KOG0255@2759 Cds size 117 COG Functional cat. GM Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko02000
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462515.8365407-UTR-Ecto-sp13_S_contig10211:410..421 1681462515.8365407-UTR-Ecto-sp13_S_contig10211:410..421 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10211 411..421 + 1681462515.8620334-UTR-Ecto-sp13_S_contig10211:538..660 1681462515.8620334-UTR-Ecto-sp13_S_contig10211:538..660 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10211 539..660 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462515.8491902-CDS-Ecto-sp13_S_contig10211:421..538 1681462515.8491902-CDS-Ecto-sp13_S_contig10211:421..538 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10211 422..538 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10211.235.1
>prot_Ecto-sp13_S_contig10211.235.1 ID=prot_Ecto-sp13_S_contig10211.235.1|Name=mRNA_Ecto-sp13_S_contig10211.235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MQRNGWSCAPGLLATVDHSASIVAAEELFCVENGPGFE* back to top mRNA from alignment at Ecto-sp13_S_contig10211:411..660+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10211.235.1 ID=mRNA_Ecto-sp13_S_contig10211.235.1|Name=mRNA_Ecto-sp13_S_contig10211.235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=250bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:411..660+ (Ectocarpus species13 EcNAP12_S_4_19m)GCCGGAGGAAG ATGCAACGAAATGGATGGAGTTGTGCCCCTGGTTTGTTG
GCGACAGTGGACCACTCGGCATCAATTGTAGCAGCCGAGGAGTTGTTCTG
CGTGGAAAACGGGCCCGGTTTTGAATAG TTTGTCCGTGCTCTTGCTGCAG
CAGTTTTTGTATGATCGGAGAGGCTTCTGGTGTTTGTTTGAAGAGCGGCA
ACCTCCTGGTTTGAGTCCGGAGCCTGTCGCTCTCACAATATCGGTAGCAC
back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10211:411..660+
>mRNA_Ecto-sp13_S_contig10211.235.1 ID=mRNA_Ecto-sp13_S_contig10211.235.1|Name=mRNA_Ecto-sp13_S_contig10211.235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:411..660+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top