prot_Ecto-sp13_S_contig1288.2369.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1288.2369.1
Unique Nameprot_Ecto-sp13_S_contig1288.2369.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length871
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1288.2369.1 vs. uniprot
Match: A0A6H5L7I3_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7I3_9PHAE)

HSP 1 Score: 1102 bits (2851), Expect = 0.000e+0
Identity = 740/873 (84.77%), Postives = 762/873 (87.29%), Query Frame = 0 
Query:    1 MDELFALFARDDDDGKGPPSAYGDEGDNLEINVAEADEXXXXXXXXXXXXXXXXXXXXXXXXXXLPGVPGEEGGSRRGGGRAAAISGRLNDHEEAKEVIEILSDDEDAQPPSARSELFEDDLRNRLSANLEVDAXXXXXXXXXXXXXXHVVGATAADLRSRMPARGGAARSIERAGAGRDPRGGLKGDGSLTKPPGGGSGSVKIGFSMMASSVAARSHKQEMQQTSAAAIGQGDALAAAAGRGDVDVVLGESKPSVEEKEASTPASNGSAGWLGGVVATAKAAVTSTINP-SDGDFGIGGSXXXXXXXXXXSQELPRNLECAMCFNPLAVVALFACGHGSCWECAHDWCSRETSSTMDCPTCHVSVPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREAEVRRRSLRDAQRSAEDTIAEQAAELEQLREEAKSRRVGRRALRTQDDSTSSMADLGFRVLNGGNLTGGRRRDFFDPASQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMPPSAAYGVVGPRGHAHHHPLSAAAAHAGSAGFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETAGRSGSSGRSAGNSAAAAEVMGLGQPAGAALKSVHGHGRVGGGGTNWRSSAYLNPGRSPLSGGAXXXXXXXRTRLHGSSARADPRGGNDVNVGAAAAGTPLGGGNLTNPGGGPGRSFTVQVPARSIRKAHGLSGLHGGGASASGGPAGSASAVAGTSSSYPNPLANGVGLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPFGGRTHGRAAXXXXXXXPSP--APMLNLDELMAGHDDASSRSEWDDVLASISTPMQATDDARSNSSGATRG 870
            MD L AL A DDDDG+GPPSAY DE DN+EI+V E + XXXXXXX                    P VPG+EGG           SGRLNDHEE+KEVIEILSDDEDAQPP ARSELFEDD+RNRLSANLEVDAXXXXXXXXXXXX  HVVGATAADLRSRMPA GGAARSIERAGAGRDPRGGLK             G VKIGFSMMASSVAARSH QEMQQT+AAA   G A AAAAGRGD+DVV+GE KPSVEEKEASTPASNGSAGWLGGVVA AKAAVTSTINP SDGD GIGGS XXXXXXXXXSQELPR LECA+CFNPLAV ALFACGHGSCWECAHDWCSRETSSTMDCPTCHVSVPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREAE RRRSLRDAQRSAEDTIAEQAAELE+LREEAKSRRVGRRALR Q+ STSSMA+ GF VLNGGNLTGGRRRDFFDPASQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GMPPSAAYGVVGPRGHAH HPLSAAAA AGS+GFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETAGRSGSSGRSAGNSAA    MGLGQPA AALKSVHGHGR GGGGTNWRSSAYL+PGRS LSGGA XXXX  RTRLHGSSARADPRGG DVNVG+AAAGTPL GGNLTNP GGPGRSFTVQVPARSIRK HGLSGLHGGGASASGG AGSA+AV GTS+SYPNPLANG+GL P XXXXXXXXXXXXXXXXXXXXXX     LPFGGRTHGRAAXXXXXXX     APML+L +LMAGHDDASSRSEWDDVLASISTPMQATDDARSNS GATRG
Sbjct:    1 MDVLSALLAGDDDDGEGPPSAYDDERDNIEIDVGEPEXXXXXXXXNMEYRPVKRSRSAAAAVS--PDVPGDEGGRXXXXXXXXXXSGRLNDHEESKEVIEILSDDEDAQPPPARSELFEDDMRNRLSANLEVDAXXXXXXXXXXXXSNHVVGATAADLRSRMPAGGGAARSIERAGAGRDPRGGLK-------------GGVKIGFSMMASSVAARSHDQEMQQTAAAATDHGGAPAAAAGRGDIDVVMGEGKPSVEEKEASTPASNGSAGWLGGVVAAAKAAVTSTINPTSDGDVGIGGSTXXXXXXXXXSQELPRILECAVCFNPLAVAALFACGHGSCWECAHDWCSRETSSTMDCPTCHVSVPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREAEGRRRSLRDAQRSAEDTIAEQAAELEKLREEAKSRRVGRRALRAQEGSTSSMAEFGFGVLNGGNLTGGRRRDFFDPASQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGMPPSAAYGVVGPRGHAHRHPLSAAAAAAGSSGFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETAGRSGSSGRSAGNSAAXXXXMGLGQPAAAALKSVHGHGRAGGGGTNWRSSAYLHPGRSSLSGGAGXXXXGGRTRLHGSSARADPRGGTDVNVGSAAAGTPLDGGNLTNPVGGPGRSFTVQVPARSIRKTHGLSGLHGGGASASGGHAGSAAAVVGTSTSYPNPLANGLGLAPPXXXXXXXXXXXXXXXXXXXXXXGDG--LPFGGRTHGRAAXXXXXXXXXXXXAPMLDLGDLMAGHDDASSRSEWDDVLASISTPMQATDDARSNSPGATRG 856
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1288.2369.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7I3_9PHAE0.000e+084.77RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..46
NoneNo IPR availableCOILSCoilCoilcoord: 405..443
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 313..367
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 300..407
e-value: 1.2E-12
score: 49.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 320..362
score: 10.734

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1288contigEcto-sp13_S_contig1288:6843..13010 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1288.2369.1mRNA_Ecto-sp13_S_contig1288.2369.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1288 6605..14034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1288.2369.1 ID=prot_Ecto-sp13_S_contig1288.2369.1|Name=mRNA_Ecto-sp13_S_contig1288.2369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=871bp
MDELFALFARDDDDGKGPPSAYGDEGDNLEINVAEADEEEEEEEEEHMEY
RPVKRSRSAAAAPVLPGVPGEEGGSRRGGGRAAAISGRLNDHEEAKEVIE
ILSDDEDAQPPSARSELFEDDLRNRLSANLEVDAPVAAAPLFQDDLSNHV
VGATAADLRSRMPARGGAARSIERAGAGRDPRGGLKGDGSLTKPPGGGSG
SVKIGFSMMASSVAARSHKQEMQQTSAAAIGQGDALAAAAGRGDVDVVLG
ESKPSVEEKEASTPASNGSAGWLGGVVATAKAAVTSTINPSDGDFGIGGS
SAAAAAAAAASQELPRNLECAMCFNPLAVVALFACGHGSCWECAHDWCSR
ETSSTMDCPTCHVSVPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVER
GQKLAREAEVRRRSLRDAQRSAEDTIAEQAAELEQLREEAKSRRVGRRAL
RTQDDSTSSMADLGFRVLNGGNLTGGRRRDFFDPASQRSAVEEYTRRRVE
EAAAAAGPASSSRQARVAAAGEAAVAAAAALGMPPSAAYGVVGPRGHAHH
HPLSAAAAHAGSAGFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETA
GRSGSSGRSAGNSAAAAEVMGLGQPAGAALKSVHGHGRVGGGGTNWRSSA
YLNPGRSPLSGGAGGGGGGGRTRLHGSSARADPRGGNDVNVGAAAAGTPL
GGGNLTNPGGGPGRSFTVQVPARSIRKAHGLSGLHGGGASASGGPAGSAS
AVAGTSSSYPNPLANGVGLVPPPSSSPSLHYSSSGGSQPSRGGGGGGGGL
PFGGRTHGRAAAAAAAVAPSPAPMLNLDELMAGHDDASSRSEWDDVLASI
STPMQATDDARSNSSGATRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING