mRNA_Ecto-sp13_S_contig12879.2367.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: D8LG61_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG61_ECTSI) HSP 1 Score: 162 bits (409), Expect = 2.000e-45 Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query: 1 AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
AI RRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ
Sbjct: 368 AIQRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 448
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI) HSP 1 Score: 162 bits (409), Expect = 1.720e-44 Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query: 1 AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
AI RRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ
Sbjct: 1992 AIQRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 2072
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: A0A6H5JWK6_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK6_9PHAE) HSP 1 Score: 132 bits (333), Expect = 2.460e-37 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1
Query: 55 MLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
MLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ
Sbjct: 1 MLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 63
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: A0A7S2SVT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVT3_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.760e-29 Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 1 AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
AI+ RL+P LRAFNP+L++LS GFDA DVGN + + A G+DL+ EDYLW T++IQ VAD+CC G++VSVLEGGYG+
Sbjct: 3 AIVSRLVPTLRAFNPELVLLSTGFDAVAHDVGNARSTNKGALPGIDLTPEDYLWVTQEIQKVADMCCSGRIVSVLEGGYGR 83
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: A0A7S1GN08_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GN08_CYCTE) HSP 1 Score: 112 bits (280), Expect = 7.540e-29 Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 1 AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAA-REGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
AI RLLPALRAFNP LI++SAGFDAA+GDVGN + A R GLDL EDY WTT KI +ADICC G++VSVLEGGYG+
Sbjct: 134 AIQNRLLPALRAFNPDLILISAGFDAARGDVGNARHYAGGKERMGLDLEPEDYAWTTRKILEIADICCQGRVVSVLEGGYGR 215
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: A0A7R9ZPI6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZPI6_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.240e-28 Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 1 AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
AI RLLPALRAFNP LI++SAGFDA++ DVGN K R G+DL EDY WTT KI +ADICC G++VSVLEGGYG+
Sbjct: 186 AIQSRLLPALRAFNPDLILISAGFDASRDDVGNAKHEVNRERRGMDLEPEDYAWTTRKILEIADICCQGRVVSVLEGGYGR 266
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: B7FXN5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXN5_PHATC) HSP 1 Score: 115 bits (288), Expect = 3.630e-28 Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
AI RLLPALRAFNP LI++SAGFDAAKGDVGN + + GLDL EDY WTT KI +ADICC G++VSVLEGGYG+
Sbjct: 1039 AIQNRLLPALRAFNPDLILISAGFDAAKGDVGNARHERGGEKVGLDLEPEDYAWTTRKILEIADICCQGRVVSVLEGGYGR 1119
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: A0A6S8HTR1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8HTR1_9STRA) HSP 1 Score: 114 bits (286), Expect = 6.760e-28 Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1
Query: 1 AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAARE--GLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
AI RLLPALRAFNP LI++SAGFDAA+GDVGN + R RE GLDL SEDY WTT KI +ADICC G++VSVLEGGYG+
Sbjct: 1011 AIQNRLLPALRAFNPDLILISAGFDAARGDVGNARH-ERGGRERMGLDLESEDYAWTTRKILEIADICCHGRVVSVLEGGYGR 1092
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: A0A835YI51_9STRA (Histone deacetylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI51_9STRA) HSP 1 Score: 112 bits (279), Expect = 9.730e-28 Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 1
Query: 1 AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
AI RLLPALRAFNPQLI++S+GFDA +GDVGN K AR + G DL+ DY W TE++Q VAD+CC G++VSVLEGGYG+
Sbjct: 196 AITARLLPALRAFNPQLILMSSGFDAVEGDVGNAKH-ARHSHAGCDLTPSDYAWITERVQEVADMCCEGRLVSVLEGGYGR 275
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Match: A0A1Z5JSY0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSY0_FISSO) HSP 1 Score: 113 bits (283), Expect = 1.720e-27 Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEDYLWTTEKIQSVADICCGGKMVSVLEGGYGQ 243
AIL RLLP+LRAFNP LI++SAGFDA KGDVGN + + GLDL EDY WTT KI VAD+CC G++VSVLEGGYG+
Sbjct: 1042 AILTRLLPSLRAFNPDLIIISAGFDACKGDVGNARHERGGEKMGLDLEPEDYAWTTRKILEVADMCCHGRVVSVLEGGYGR 1122 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12879.2367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12879.2367.1 >prot_Ecto-sp13_S_contig12879.2367.1 ID=prot_Ecto-sp13_S_contig12879.2367.1|Name=mRNA_Ecto-sp13_S_contig12879.2367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp AILRRLLPALRAFNPQLIMLSAGFDAAKGDVGNCKQGARAAREGLDLSSEback to top mRNA from alignment at Ecto-sp13_S_contig12879:242..924+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12879.2367.1 ID=mRNA_Ecto-sp13_S_contig12879.2367.1|Name=mRNA_Ecto-sp13_S_contig12879.2367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=683bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12879:242..924+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12879:242..924+ >mRNA_Ecto-sp13_S_contig12879.2367.1 ID=mRNA_Ecto-sp13_S_contig12879.2367.1|Name=mRNA_Ecto-sp13_S_contig12879.2367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12879:242..924+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |