prot_Ecto-sp13_S_contig12878.2366.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12878.2366.1
Unique Nameprot_Ecto-sp13_S_contig12878.2366.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length64
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12878.2366.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.070e-24
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0 
Query:    1 MALQAKNNDSSDPTELLERDLQVATEGVESVEAELAMNQRLSEEAESKIEPFQRAKAIAAKAH 63
            MALQAKNNDSSDPTE LERDLQVATEGVESVEAELA NQRLSEEA SKIEPF+RAKAIA KAH
Sbjct:  786 MALQAKNNDSSDPTEQLERDLQVATEGVESVEAELATNQRLSEEAASKIEPFERAKAIATKAH 848
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BLAST of mRNA_Ecto-sp13_S_contig12878.2366.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.770e-10
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0 
Query:    1 MALQAKNNDSSDPTELLERDLQVATEGVESVEAELAMNQRLSEEAESKIEPFQRAKAIAAKAH 63
            MALQAK NDSSDPTE LERDL+VATE ++ V AELA  +    E  +++EPF++AK  A KAH
Sbjct:  884 MALQAKKNDSSDPTEELERDLEVATEELDGVLAELATMEGQIREIAAQVEPFKQAKEAAKKAH 946
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12878.2366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4M1_ECTSI5.070e-2492.06Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI1.770e-1060.32Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 28..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12878contigEcto-sp13_S_contig12878:505..965 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12878.2366.1mRNA_Ecto-sp13_S_contig12878.2366.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12878 505..965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12878.2366.1 ID=prot_Ecto-sp13_S_contig12878.2366.1|Name=mRNA_Ecto-sp13_S_contig12878.2366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MALQAKNNDSSDPTELLERDLQVATEGVESVEAELAMNQRLSEEAESKIE
PFQRAKAIAAKAHE
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