mRNA_Ecto-sp13_S_contig12878.2366.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12878.2366.1
Unique NamemRNA_Ecto-sp13_S_contig12878.2366.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12878.2366.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.070e-24
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 MALQAKNNDSSDPTELLERDLQVATEGVESVEAELAMNQRLSEEAESKIEPFQRAKAIAAKAH 189
            MALQAKNNDSSDPTE LERDLQVATEGVESVEAELA NQRLSEEA SKIEPF+RAKAIA KAH
Sbjct:  786 MALQAKNNDSSDPTEQLERDLQVATEGVESVEAELATNQRLSEEAASKIEPFERAKAIATKAH 848
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BLAST of mRNA_Ecto-sp13_S_contig12878.2366.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.770e-10
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 MALQAKNNDSSDPTELLERDLQVATEGVESVEAELAMNQRLSEEAESKIEPFQRAKAIAAKAH 189
            MALQAK NDSSDPTE LERDL+VATE ++ V AELA  +    E  +++EPF++AK  A KAH
Sbjct:  884 MALQAKKNDSSDPTEELERDLEVATEELDGVLAELATMEGQIREIAAQVEPFKQAKEAAKKAH 946
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12878.2366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4M1_ECTSI5.070e-2492.06Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI1.770e-1060.32Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12878contigEcto-sp13_S_contig12878:505..965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score103.2
Seed ortholog evalue4.6e-20
Seed eggNOG ortholog2880.D7G4M1
Preferred nameSMC6
Model size193
KEGG koko:K12614,ko:K15014
KEGG TC2.A.57.1
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
Exons2
EggNOG free text desc.double-strand break repair via homologous recombination
EggNOG OGsCOG1196@1,KOG0250@2759
EC3.6.4.13
Cds size192
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.7685564-CDS-Ecto-sp13_S_contig12878:504..5821681462688.7685564-CDS-Ecto-sp13_S_contig12878:504..582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12878 505..582 +
1681462688.781164-CDS-Ecto-sp13_S_contig12878:851..9651681462688.781164-CDS-Ecto-sp13_S_contig12878:851..965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12878 852..965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12878.2366.1prot_Ecto-sp13_S_contig12878.2366.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12878 505..965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12878.2366.1

>prot_Ecto-sp13_S_contig12878.2366.1 ID=prot_Ecto-sp13_S_contig12878.2366.1|Name=mRNA_Ecto-sp13_S_contig12878.2366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MALQAKNNDSSDPTELLERDLQVATEGVESVEAELAMNQRLSEEAESKIE
PFQRAKAIAAKAHE
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mRNA from alignment at Ecto-sp13_S_contig12878:505..965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12878.2366.1 ID=mRNA_Ecto-sp13_S_contig12878.2366.1|Name=mRNA_Ecto-sp13_S_contig12878.2366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=461bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12878:505..965+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTTCAGGCCAAGAATAACGACTCGAGCGACCCCACTGAGCTTCT
GGAGAGAGATCTCCAAGTAGCGACGGAGGTGAGAGATGCATCAAATCGGA
GGAGTACACATTTTCGCGTGACAGCGCATCGCCGTCACATCGCGGTAGGA
CCGTATCGCACACCCGTTGCATCCTTTGGCATTTCTTTGATGGTCAGCCA
CATCCATATTGCTTGCTGTGCAAGGGCTCGGAATCGGTGCGGATGGTTGT
GGTCAGCGCTAGCACGCGACAGCGGGGTGGCGTGGCGTGTTTTCGTGGTC
CCACTGATGAGCAAACATGTGACTCTCACTCTGTTGTTCGGTTTCAGGGG
GTGGAGAGTGTGGAGGCGGAGCTGGCTATGAATCAGAGACTGTCGGAAGA
AGCGGAATCTAAGATCGAGCCCTTCCAGAGGGCCAAAGCCATCGCCGCGA
AGGCGCACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12878:505..965+

>mRNA_Ecto-sp13_S_contig12878.2366.1 ID=mRNA_Ecto-sp13_S_contig12878.2366.1|Name=mRNA_Ecto-sp13_S_contig12878.2366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12878:505..965+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTTCAGGCCAAGAATAACGACTCGAGCGACCCCACTGAGCTTCT
GGAGAGAGATCTCCAAGTAGCGACGGAGGGGGTGGAGAGTGTGGAGGCGG
AGCTGGCTATGAATCAGAGACTGTCGGAAGAAGCGGAATCTAAGATCGAG
CCCTTCCAGAGGGCCAAAGCCATCGCCGCGAAGGCGCACGAG
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