mRNA_Ecto-sp13_S_contig12873.2364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12873.2364.1
Unique NamemRNA_Ecto-sp13_S_contig12873.2364.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12873.2364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12873contigEcto-sp13_S_contig12873:1267..2089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size282
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.684435-CDS-Ecto-sp13_S_contig12873:1266..14811681462688.684435-CDS-Ecto-sp13_S_contig12873:1266..1481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12873 1267..1481 +
1681462688.6927078-CDS-Ecto-sp13_S_contig12873:2023..20811681462688.6927078-CDS-Ecto-sp13_S_contig12873:2023..2081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12873 2024..2081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.703084-UTR-Ecto-sp13_S_contig12873:2081..20891681462688.703084-UTR-Ecto-sp13_S_contig12873:2081..2089Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12873 2082..2089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12873.2364.1prot_Ecto-sp13_S_contig12873.2364.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12873 1267..2081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12873.2364.1

>prot_Ecto-sp13_S_contig12873.2364.1 ID=prot_Ecto-sp13_S_contig12873.2364.1|Name=mRNA_Ecto-sp13_S_contig12873.2364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
EKPRQIGAVGGSQCRSVDHSEITAAWAGILVVRPVILRAEVAEGSLSLLR
IQEARDPHRGGLGYRVPRAHDRIFSLAGGWRIKETIVVLL*
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mRNA from alignment at Ecto-sp13_S_contig12873:1267..2089+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12873.2364.1 ID=mRNA_Ecto-sp13_S_contig12873.2364.1|Name=mRNA_Ecto-sp13_S_contig12873.2364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=823bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12873:1267..2089+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAGCCAAGGCAAATCGGAGCCGTGGGAGGGAGCCAATGTCGCAGCGT
GGATCATAGCGAGATCACAGCGGCATGGGCAGGAATCCTGGTCGTGAGAC
CGGTGATATTGAGAGCCGAAGTGGCAGAAGGGTCGCTCAGTCTCCTACGC
ATACAGGAGGCACGTGATCCTCACCGTGGGGGCCTTGGGTACCGAGTGCC
GCGAGCACACGACAGGTGAGCGCCGCTGTCTAGACGTGTCTCCTGAGTAC
AGAACCAACTGCTTGGTTTCGTTGCTCTTCACAGCAGCAATGGTATCGAC
ACCTGCCTTGCTGACTGCTCCTACGCCTCTTTTTTGTTGTGGTACACGCA
ATGTCATGTGCAATTCCATCTACCCGCCGCCTGCCCCGAAACCGTCCGTG
CCAACACTTGGTGTGATCCATATACATACGCCACGCCCAGCTCCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTGTCTCTCTGTCTT
TGCCTCGATCTCTCTCTGGCGCTCGATGTCATTCTCTCCTGCCGTCGCGG
CGGCGCACTGCTGCTCTGTAAAAGTGTGTTTAGTACAAAGCGCCACAGAC
TATGTCGTGCTGTAGTCTACCTGTTGGTTGTGGTGCATCGAGGTATGCAT
GCGTGTTACATGTAACTTGTTCCTGGTGTGCGCTGGCCATGACCCAAGGA
GATCCGCTGCTTGTCATACATTCTGACAATCGCACACCACGCCTTGCAAT
GTTTCAGGATTTTTTCTCTGGCTGGCGGATGGCGAATAAAGGAAACCATC
GTTGTACTGCTATAGCCGTCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12873:1267..2089+

>mRNA_Ecto-sp13_S_contig12873.2364.1 ID=mRNA_Ecto-sp13_S_contig12873.2364.1|Name=mRNA_Ecto-sp13_S_contig12873.2364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12873:1267..2089+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAGCCAAGGCAAATCGGAGCCGTGGGAGGGAGCCAATGTCGCAGCGT
GGATCATAGCGAGATCACAGCGGCATGGGCAGGAATCCTGGTCGTGAGAC
CGGTGATATTGAGAGCCGAAGTGGCAGAAGGGTCGCTCAGTCTCCTACGC
ATACAGGAGGCACGTGATCCTCACCGTGGGGGCCTTGGGTACCGAGTGCC
GCGAGCACACGACAGGATTTTTTCTCTGGCTGGCGGATGGCGAATAAAGG
AAACCATCGTTGTACTGCTATAG
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