mRNA_Ecto-sp13_S_contig12863.2361.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12863.2361.1
Unique NamemRNA_Ecto-sp13_S_contig12863.2361.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12863.2361.1 vs. uniprot
Match: A0A6H5L6G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G4_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.190e-38
Identity = 95/147 (64.63%), Postives = 96/147 (65.31%), Query Frame = 3 
Query:   12 GAGMGLVAGGASMGGDNGGDASMGQAAXXXXAAGLDALYAEDVDMGEAMPWSFAPDSSGFAVGAASNALSAQDLSAP--------------------AXXXXXXXXXXXXXXXXXXXXXXXSSQSSATAPAWGMDSPSLFSPEKWTA 392
            GAGMGLVAG ASMGGDNGGDASMGQAA    AAGLDALYAEDVDMGEAMPWSFAPDSSGFAVGAASNA SAQDLSAP                    A                       S+QSS TAPAWGMDSPSLFS EKWTA
Sbjct:  857 GAGMGLVAGSASMGGDNGGDASMGQAAAA--AAGLDALYAEDVDMGEAMPWSFAPDSSGFAVGAASNAPSAQDLSAPIMALRSAPTGPVASLVLSAPAAAAGATPATGEPNDASPNTGASASTQSSGTAPAWGMDSPSLFSAEKWTA 1001
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BLAST of mRNA_Ecto-sp13_S_contig12863.2361.1 vs. uniprot
Match: D8LDQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ7_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.760e-37
Identity = 89/145 (61.38%), Postives = 92/145 (63.45%), Query Frame = 3 
Query:   21 MGLVAGGASMGGDNGGDASMGQAAXXXXAAGLDALYAEDVDMGEAMPWSFAPDSSGFAVGAASNALSAQDLSAPAXXXXXXXXXXXXXXXXXXXXXXXSSQSSA---------------------TAPAWGMDSPSLFSPEKWTA 392
            MGLV+GGASMGGDNGGDASMGQAA    AAGLDALYAEDVDMGEAMPWSFAPDS+GFA GAASNA SAQDLSAPA                    XXX    +                      TAPAWGMDSPS FSPEKWTA
Sbjct:    1 MGLVSGGASMGGDNGGDASMGQAA----AAGLDALYAEDVDMGEAMPWSFAPDSNGFAGGAASNAPSAQDLSAPATASRSTPTGPVASLVLSAPAXXXXXXXATAESNDAXXXXXXXXXXXXXXXTAPAWGMDSPSPFSPEKWTA 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12863.2361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6G4_9PHAE3.190e-3864.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDQ7_ECTSI3.760e-3761.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12863contigEcto-sp13_S_contig12863:266..1874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size395
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001570.1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.3921437-UTR-Ecto-sp13_S_contig12863:265..2851681462688.3921437-UTR-Ecto-sp13_S_contig12863:265..285Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12863 266..285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.4016614-CDS-Ecto-sp13_S_contig12863:285..3461681462688.4016614-CDS-Ecto-sp13_S_contig12863:285..346Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12863 286..346 +
1681462688.4205127-CDS-Ecto-sp13_S_contig12863:1033..11471681462688.4205127-CDS-Ecto-sp13_S_contig12863:1033..1147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12863 1034..1147 +
1681462688.432363-CDS-Ecto-sp13_S_contig12863:1674..18741681462688.432363-CDS-Ecto-sp13_S_contig12863:1674..1874Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12863 1675..1874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12863.2361.1prot_Ecto-sp13_S_contig12863.2361.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12863 286..1874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12863.2361.1

>prot_Ecto-sp13_S_contig12863.2361.1 ID=prot_Ecto-sp13_S_contig12863.2361.1|Name=mRNA_Ecto-sp13_S_contig12863.2361.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MGLVAGGASMGGDNGGDASMGQAAAAAAAAGLDALYAEDVDMGEAMPWSF
APDSSGFAVGAASNALSAQDLSAPAAAAGATPATAEPNDASSNTGASASS
QSSATAPAWGMDSPSLFSPEKWTA*
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mRNA from alignment at Ecto-sp13_S_contig12863:266..1874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12863.2361.1 ID=mRNA_Ecto-sp13_S_contig12863.2361.1|Name=mRNA_Ecto-sp13_S_contig12863.2361.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12863:266..1874+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTCGGGGTCGGTGCGGGGATGGGGCTTGTTGCGGGTGGCGCGAGCATG
GGCGGCGACAACGGCGGGGATGCCTCGATGGGTGAGACAGCGATGATGGA
GACAGAGATATACAAATAGAGAGAGAAAGAGGGACAAACAGACTGAGAGA
GAAGAGAGGGAGAGAAAGAAGTTGCAAGCGTGGTGCCCCCGTGCCCATAT
ACGCTCTTGTTTCTTGGTCGCCCCGTGTGTGCGTGTGTGTGCAGTCGGGG
TAAGATAGTTTGCTGGACTCTGTCCCCCCGCCGCGCCGAGCGTTGTTTTC
TCTTGAAGCGCTCCTTGCGGTCGTGCGTGCCCGGTTGCTATTGTGCCTTG
CAGTTTTGAAGCCGACGAAGATGATACCGAAGGTTGCGTGACGTAAGATA
GGTGTCATATCCCCTGGTCCGATTTTCTAAGCTCGATTACTCGGCAGGAA
AAGAAGTGGTGGGCAAAAAAACATGGCGTCGTTGGAACCATCTCGTCGAG
AGCTTTCCGACAAATCCTTAGATTTCAGCATCCTAATCGTCTTGGAGTAG
TGAGTGAAGCTTTGATATGGTTCCAGGGGGTGTGGTATCTTGTGCAACCG
ATGATAATCCTCTTTTAAGAGTGCTCTTGTGATGTCGAAGTCGAAGCACG
TTTACTTGTCGCCACCCCAAGAACTGCATCCTATTGGATTCATCACGCTG
AAATTATCCCCCCCCCCCCCTCGCGCCGTATCTCTGTCCACCGTTCCTTC
GGCTGTGATTGTCTGTAGGGCAAGCCGCCGCCGCCGCCGCCGCCGCGGGT
CTAGACGCGCTGTATGCGGAGGACGTGGACATGGGCGAGGCCATGCCGTG
GTCATTCGCACCCGACTCCAGCGGGTTCGCAGGTACAGTTTACACCCCGC
TCGAAGGAAAAGGCCCATTACCTGATTGGCCCTTGTTGGAGGTACACCCC
TCGAGCCTCTGGTGCATCGTTGCGAAACGCACCCCTATAGCGAAAACCAT
GAAGGCATATCGCTCCGTCCCGGCATTGCAGGGCTGCGGGGTCTAAAGAG
TACGGCATGCGTTTACATGAGCACACCCTCCGTCGAGCCCAAGATACAAG
ATGTTCATATCTGTACTAGCGTCTTGTCACGGGTACGGGCAGCCATCGGA
TGTCTTGCATTATACATAGGAGTTGGTTTTCCTTCAAAAGAAGCAAAAAA
AAAAACACATGTTCGCCAACGCCTTGAACTGCCAACATTTCTGTTTGGCG
CATATGCTTCTTTTTTAAGTAGTTGCTGCCGTTGATGGCTCGCCCCTCGG
ACAGCGACGAACACGCCCTCTCGCCGCTGCGTCGCCGTTACTGCTGAACT
GCCCCCGTAGTGTGATGATACGTCTCTCGTCGTCGTTTTGTCCGTCCCAC
CCCGTACAGTAGGCGCAGCGTCCAACGCGCTCTCCGCCCAAGATCTCTCC
GCGCCGGCGGCAGCGGCGGGGGCGACCCCGGCAACGGCGGAGCCCAACGA
CGCCTCTTCCAACACCGGCGCTTCTGCCTCGAGCCAATCTTCGGCAACGG
CGCCAGCCTGGGGCATGGATTCTCCATCTCTCTTTTCCCCGGAAAAGTGG
ACGGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12863:266..1874+

>mRNA_Ecto-sp13_S_contig12863.2361.1 ID=mRNA_Ecto-sp13_S_contig12863.2361.1|Name=mRNA_Ecto-sp13_S_contig12863.2361.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12863:266..1874+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCTTGTTGCGGGTGGCGCGAGCATGGGCGGCGACAACGGCGGGGA
TGCCTCGATGGGGCAAGCCGCCGCCGCCGCCGCCGCCGCGGGTCTAGACG
CGCTGTATGCGGAGGACGTGGACATGGGCGAGGCCATGCCGTGGTCATTC
GCACCCGACTCCAGCGGGTTCGCAGTAGGCGCAGCGTCCAACGCGCTCTC
CGCCCAAGATCTCTCCGCGCCGGCGGCAGCGGCGGGGGCGACCCCGGCAA
CGGCGGAGCCCAACGACGCCTCTTCCAACACCGGCGCTTCTGCCTCGAGC
CAATCTTCGGCAACGGCGCCAGCCTGGGGCATGGATTCTCCATCTCTCTT
TTCCCCGGAAAAGTGGACGGCGTAG
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