mRNA_Ecto-sp13_S_contig12860.2360.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12860.2360.1
Unique NamemRNA_Ecto-sp13_S_contig12860.2360.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12860.2360.1 vs. uniprot
Match: D7FVV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV3_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 2.370e-69
Identity = 138/153 (90.20%), Postives = 141/153 (92.16%), Query Frame = 2 
Query:   14 MNMLRFLPGKKRPLQQQGTAAAG-GRLCTAAAGAPGNYEQAPGAPAAMTLEQQLRLPPNQREARXXXXXXXXXXXXXXXXERQHTIDLQRSSRGLSNADEMALVQQRELRMQRNLSLPERHPRSSSSSLEYGATDHEEEEDDGERSDRSDSIE 469
            MNMLRFLPGKKRPLQQQGTAAA  GRLCTAAAG  GN+EQ PGAPAAMTLEQQLRL PNQ EAR   XXXXXXXXXXXX ERQHTIDLQRSSRGLSNADEMALVQQRELRMQRNLSLPERHPRSSSSS+EYG TDHEE+EDDGERSDRSDSIE
Sbjct:    1 MNMLRFLPGKKRPLQQQGTAAAAVGRLCTAAAGTAGNHEQVPGAPAAMTLEQQLRLTPNQTEAREDGXXXXXXXXXXXX-ERQHTIDLQRSSRGLSNADEMALVQQRELRMQRNLSLPERHPRSSSSSVEYGVTDHEEDEDDGERSDRSDSIE 152
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BLAST of mRNA_Ecto-sp13_S_contig12860.2360.1 vs. uniprot
Match: A0A6H5KWG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG8_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.190e-62
Identity = 127/152 (83.55%), Postives = 131/152 (86.18%), Query Frame = 2 
Query:   14 MNMLRFLPGKKRPLQQQGTAAAGGRLCTAAAGAPGNYEQAPGAPAAMTLEQQLRLPPNQREARXXXXXXXXXXXXXXXXERQHTIDLQRSSRGLSNADEMALVQQRELRMQRNLSLPERHPRSSSSSLEYGATDHEEEEDDGERSDRSDSIE 469
            MNMLRFLPGKKRPLQQQ T A          GAPGN+EQA GAPAAMTLEQQLRLPPNQ EAR    XXXXXXXXXXX ERQHTIDLQRSSRGLSNADEMALVQQRELR+QRNLSLPERHPRSSSSS EYG TDHEE++DDGERSDRSDSIE
Sbjct:    1 MNMLRFLPGKKRPLQQQRTPA----------GAPGNHEQAQGAPAAMTLEQQLRLPPNQTEAREDGDXXXXXXXXXXXEERQHTIDLQRSSRGLSNADEMALVQQRELRIQRNLSLPERHPRSSSSSQEYGVTDHEEDDDDGERSDRSDSIE 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12860.2360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVV3_ECTSI2.370e-6990.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWG8_9PHAE1.190e-6283.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12860contigEcto-sp13_S_contig12860:3471..3942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size472
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002270.1
Cds size459
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.3405612-UTR-Ecto-sp13_S_contig12860:3470..34831681462688.3405612-UTR-Ecto-sp13_S_contig12860:3470..3483Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12860 3471..3483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.3506045-CDS-Ecto-sp13_S_contig12860:3483..39421681462688.3506045-CDS-Ecto-sp13_S_contig12860:3483..3942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12860 3484..3942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12860.2360.1prot_Ecto-sp13_S_contig12860.2360.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12860 3484..3942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12860.2360.1

>prot_Ecto-sp13_S_contig12860.2360.1 ID=prot_Ecto-sp13_S_contig12860.2360.1|Name=mRNA_Ecto-sp13_S_contig12860.2360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
MNMLRFLPGKKRPLQQQGTAAAGGRLCTAAAGAPGNYEQAPGAPAAMTLE
QQLRLPPNQREAREDREEGEEEEEEEIREERQHTIDLQRSSRGLSNADEM
ALVQQRELRMQRNLSLPERHPRSSSSSLEYGATDHEEEEDDGERSDRSDS
IE*
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mRNA from alignment at Ecto-sp13_S_contig12860:3471..3942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12860.2360.1 ID=mRNA_Ecto-sp13_S_contig12860.2360.1|Name=mRNA_Ecto-sp13_S_contig12860.2360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=472bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12860:3471..3942+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACACGAACTTCATGAACATGCTTCGGTTTTTGCCCGGCAAGAAGCGTC
CACTTCAACAACAAGGAACAGCGGCAGCAGGAGGGCGATTATGCACAGCA
GCAGCAGGAGCACCAGGCAACTACGAACAAGCGCCAGGAGCTCCGGCGGC
AATGACCCTGGAACAGCAGCTGAGGCTGCCACCGAACCAGAGAGAGGCGC
GCGAAGACAGGGAGGAGGGAGAGGAAGAGGAAGAGGAGGAGATACGAGAG
GAGCGGCAACACACGATAGACCTGCAGCGCAGCAGCAGGGGGCTGAGCAA
CGCTGACGAGATGGCGCTGGTCCAGCAGAGGGAGCTCCGGATGCAGCGGA
ACCTGTCCCTGCCGGAGAGGCATCCGCGGTCATCTTCCTCGTCCCTGGAA
TACGGCGCGACGGACCACGAAGAAGAAGAAGACGACGGGGAGAGGAGCGA
CCGCTCCGACAGCATCGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12860:3471..3942+

>mRNA_Ecto-sp13_S_contig12860.2360.1 ID=mRNA_Ecto-sp13_S_contig12860.2360.1|Name=mRNA_Ecto-sp13_S_contig12860.2360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12860:3471..3942+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACATGCTTCGGTTTTTGCCCGGCAAGAAGCGTCCACTTCAACAACA
AGGAACAGCGGCAGCAGGAGGGCGATTATGCACAGCAGCAGCAGGAGCAC
CAGGCAACTACGAACAAGCGCCAGGAGCTCCGGCGGCAATGACCCTGGAA
CAGCAGCTGAGGCTGCCACCGAACCAGAGAGAGGCGCGCGAAGACAGGGA
GGAGGGAGAGGAAGAGGAAGAGGAGGAGATACGAGAGGAGCGGCAACACA
CGATAGACCTGCAGCGCAGCAGCAGGGGGCTGAGCAACGCTGACGAGATG
GCGCTGGTCCAGCAGAGGGAGCTCCGGATGCAGCGGAACCTGTCCCTGCC
GGAGAGGCATCCGCGGTCATCTTCCTCGTCCCTGGAATACGGCGCGACGG
ACCACGAAGAAGAAGAAGACGACGGGGAGAGGAGCGACCGCTCCGACAGC
ATCGAGTGA
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