mRNA_Ecto-sp13_S_contig1286.2356.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1286.2356.1 vs. uniprot
Match: D7G6J8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J8_ECTSI) HSP 1 Score: 557 bits (1435), Expect = 3.940e-191 Identity = 342/591 (57.87%), Postives = 378/591 (63.96%), Query Frame = 1
Query: 1 PGKLQPTPEMVARRGQPRGLWKELARIDADKRGYDFWDSREAGLGCF*GS*SRSLWTLVVT*MLFLNRTTTPLCSSSTERTFLIS*FGWPRRNDGDNGFCCCWRFPRPAAARSRSTGCFL-----------SAQGSGVNSTT**ISCVAS***DTTRRCCQRP*RLMEPSRSRRGLSVTSWRAP*EEGALRSCLLFLRLTAFYRRCRKWTTQDTQASLFFLLPYHWVT---------------GAWWRP*SKRALPWSSNLDAADFLATAVASDRDEAPGIVRDLLAAGADVNNAGHNDQTRMPFANSPLYLAAAKNKEGTMNLLLATGADLGNERVGILPLHDAAQHHSCGAMQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKPLLRYNARVMLLCDDGLSPFDVVAIAVLQRRQSNQSWVLRRRLSTLNVNETSVADRNLEMLRRACAWERRAWLILMRRRVARDPLAAGSSSRPPSFLESAFGDQTATPHDSETKEDANDGGCEQPVHGDIDLTGASPRGSAAPSEAIEGRTGHAFAQQTPAVDSSSCNDGVKVQVCDSLRCAVEWLVQCPDEAGIFRETLAIL 1695
P ++PTPEMV R+GQPRGLWKELARID D RG DFWDSREAGLG R + L++ LN P ++ F R + + +A RS F S Q + +N + + + + L PS R L EGA+R Q+ + + LP + GA S+R P LATAVASDRDEA GIVRDLLA GADVNN GHNDQT+ PF NSPL LAAAKNKEG M+LLLA GADLGNERV ILPLH AA HHSCGA+QRLISAGASVHQLDSRGRSALHVACLHNCEGAVK LL+YNARV LLCD GLSPFDVVA+AVL RRQ N+ W LRRR STLN NETSVADR LEMLRRA AWERR WL+LMR R+A DPLAAGSSSRPPSF+ES FGDQTATPHDSETKEDANDGGCE VHGDIDL GASPRG+A PSEAIEGR+GHAF +TPAVDSSS N G KVQVC+SLRCAVEWLVQCPDE GIFRETLA L
Sbjct: 11 PHTMKPTPEMVVRKGQPRGLWKELARIDGDNRGRDFWDSREAGLGML----LRFIEPLIMETGGELNAVLEPYDDATLLEQHGADVFDLFVRLASEELWGQWIFLLLEVSASGRSAIAFQRLFPLCPEEIWSDQHNIINLLRRVV--IVGHNTEVLSTLLEIDGALPLPSGFVRDLV---------EGAVRGGSXXXXXXXXXXXSVLSQVQEVDDAGYSSLPILSIAAFLGGRSMVAALIKAGAPLEFQSRRGRP---------PLATAVASDRDEALGIVRDLLAVGADVNNVGHNDQTKGPFGNSPLCLAAAKNKEGMMDLLLAAGADLGNERVDILPLHAAAHHHSCGALQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKLLLQYNARVTLLCDGGLSPFDVVAMAVLNRRQLNRCWGLRRRPSTLNSNETSVADRILEMLRRASAWERRGWLVLMRHRIAHDPLAAGSSSRPPSFVESEFGDQTATPHDSETKEDANDGGCELSVHGDIDLAGASPRGTA-PSEAIEGRSGHAFTLETPAVDSSSPNGGGKVQVCESLRCAVEWLVQCPDEVGIFRETLAFL 576
BLAST of mRNA_Ecto-sp13_S_contig1286.2356.1 vs. uniprot
Match: A0A6H5JHE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE3_9PHAE) HSP 1 Score: 252 bits (644), Expect = 3.050e-74 Identity = 198/465 (42.58%), Postives = 223/465 (47.96%), Query Frame = 3
Query: 105 FLGQQGSWVGMLLRFIKPLIMDIGGDLNAVLEPYDDAALLEQHGADVFDLLIRLASEE*WGQWVLLLLEVSASGRSAI-----AFHGLFPLCPG---------------LWSEQYNIINLLRRIVIVRHNTEVLSTPLEIDGALP-LPSGFVRDLVEGAVRGGSLEVMSTLLAVDSVLSQVQEVDDTGYSSLPIFSFAVSLGDRSMVAALIKASAPLEFQSRRGRLFGHGGCKRP*RGPGDRPRPSGCRGRREQRRPQ*SNEDALREFSAILGRCQEQGRNDEPSSGYRSRSWKRAGGHPPAPRCGPAPLLRSNAAPDFSWRERAPVGFERSLCVARGLSAQL*GCRQAIAAVQRPRDVALRRRSFAVRRGRHRSSPKAAVKPILGIEATAVYFERQRDLCC*P*SR-DAEEGLCMGTPCLAHPHAAPCRTRSPCRGVILTAAIVPRVSIWRPNRNPARQRDEGG 1433
F + + +GMLLRF+KPLIMD+GGDLNAVLEPYD+ LLEQHGA VF L IRLASEE WGQW+LLLLEVSASGRSAI A L G + +QYNI NLLRR+VIV HNTEVL LE D A P P G V+EVDDTGYSSLPI SFAVSLGDRSMV ALIKA PLEFQSR H DR + G + + A G N++ R P+ E +RG SA CR + + L+ + SP + A AV RQ C R DAEEG C+GTPCLAHPHAAP RTRSPCRGVILTAAIV R SI RPNRN + RDEGG
Sbjct: 44 FWDSREAGLGMLLRFVKPLIMDVGGDLNAVLEPYDERRLLEQHGAVVFYLFIRLASEESWGQWILLLLEVSASGRSAIDCVPRAISSLPRALGGSAVVVVVVVDFTLNRMRGDQYNITNLLRRVVIVGHNTEVLLMLLENDVASPPAPVG------------------------------VREVDDTGYSSLPILSFAVSLGDRSMVVALIKAGTPLEFQSR------HSRAPLAIVVASDRDKALGI----------------VHDLLAAGADVNNAGHNNQT---------------------------------------RMPIWREWHQLDSRGRSALHVACRHNCEGAVK---LLLQYDARVTLLCDDSLSP-------FDVVAVAVLKRRQLSQCWRLRRRPDAEEGQCVGTPCLAHPHAAPYRTRSPCRGVILTAAIVRRTSIRRPNRNLVQHRDEGG 407
BLAST of mRNA_Ecto-sp13_S_contig1286.2356.1 vs. uniprot
Match: A0A6H5JHC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC8_9PHAE) HSP 1 Score: 233 bits (594), Expect = 7.370e-68 Identity = 144/249 (57.83%), Postives = 162/249 (65.06%), Query Frame = 1
Query: 955 AAQHHSCGAMQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKPLLRYNARVMLLCDDGLSPFDVVAIAVLQRRQSNQSWVLRRRLSTLNVNETSVADRNLEMLRRACAWERRAWLILMRRRVARDPLAAGSSSRPPSFLESAFGDQTATPHDSETKEDANDGGCEQPVHGDIDLTGASPRGSAAPSEAIEGRTG-HAFAQ-QTPAVDSSSCNDGVKVQVCDSLRCAVEWLVQCPDEAGIFRETLAIL 1695
AAQ CGA Q LISAGASVHQLDS GR+ALH+ CLHNCEGAVK LLRYNA + LLCD+GLSPFDVV IAVL RR+SN + RR WL+LMR R A D +A SSS P S +ESAF +TATP S+TKEDANDGGCE P GDI+ GASP+G+A PSEA EGRT H+ + Q +V N G KVQVC LR AVEWLVQCPDE G+F ET A L
Sbjct: 153 AAQCDCCGAKQGLISAGASVHQLDSGGRAALHMTCLHNCEGAVKLLLRYNACMTLLCDEGLSPFDVVIIAVLNRRESNGFY----------------------------PQGRRGWLVLMRHRFAHDLVATASSSPPRSCVESAFSGKTATP--SKTKEDANDGGCELPGDGDINSAGASPKGTA-PSEAFEGRTSQHSLCKCQWWSVP----NGGGKVQVCHVLRGAVEWLVQCPDEVGVFSETSAFL 366
BLAST of mRNA_Ecto-sp13_S_contig1286.2356.1 vs. uniprot
Match: D7G6J7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J7_ECTSI) HSP 1 Score: 205 bits (521), Expect = 2.140e-58 Identity = 146/284 (51.41%), Postives = 163/284 (57.39%), Query Frame = 1
Query: 466 MEPSRSRRGLSVTSWRAP*EEGALRSCLLFLRLTAFYRRCRKWTTQDTQASLFFLLPYHWVTGAWWRP*SKRALPWSSNLDAADFLATAVASDRDEAPGIVRDLLAAGADVN--NAGHNDQTRMPFANSPLYLAAAKNKEGTMNLLLATGADLGNERVGILPLHDAAQHHSCGAMQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKPLLRYNARVMLLCDDGLSPFDVVAIAVLQRRQSNQSWVLR-----RRLSTLNVNETSVADRNLEMLRRACAWERR 1296
M R RRG + TSWRA EEGALRSCLL LRLTA RR + T + L P N LATAVASD A GI RDLL AGADVN NAG+ +P+ E M+LL A GADLG ER PLH AAQ CGA+QRLISAGASVHQL+S GRSALH+ACLH CEGAVK LLRYN + LLCD GLSPFDVVAIAVL RR++ + R ST N +ET VAD ++LRR W RR
Sbjct: 1 MGSFRCRRGQASTSWRAQCEEGALRSCLLSLRLTASSRRRGDRSMVGTLIKVGVPL---------------ECRPRLGNPP----LATAVASDG--ALGIARDLLDAGADVNKSNAGYGV---LPYM------------EDMMDLLPAAGADLGKERAATSPLHAAAQCDCCGAIQRLISAGASVHQLNSGGRSALHMACLHKCEGAVKLLLRYNTCMTLLCDKGLSPFDVVAIAVLNRRENYGFYPQGYSPSGRSPSTSNADETYVADHIHDLLRRTSGWRRR 248
BLAST of mRNA_Ecto-sp13_S_contig1286.2356.1 vs. uniprot
Match: D7FKD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD8_ECTSI) HSP 1 Score: 154 bits (389), Expect = 2.170e-36 Identity = 109/264 (41.29%), Postives = 145/264 (54.92%), Query Frame = 1
Query: 913 DLGNERVGILPLHDAAQHHSCGAMQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKPLLRYNARVMLLCDDGLSPFDVVAIAVLQRRQ-SNQSWVLR-RRLSTLNVNETSVADRNLEMLRRACAWERRAWLILMR-RRVARDPLAAGSSSRPPSFLESAFGDQTATPHDSETKEDANDGGCEQPVHGDIDLTGASPRGSAAPSEAIEGRTGHAFAQQTPAVDSSSCNDGVKVQVCDSLRCAVEWLVQCPDEAGIFRETLAIL 1695
DLG +R LPLH A+ C ++RL+ AGA V +D GRSALHVAC++N EGAV+ LL+++A LLCD+GLSP+DVVA L+RRQ + S+ RR STLN ET VADR +L+R+ +W RR WL++MR RR+ + + S S PS S G Q A+ HD E+ D C P G A R + E R + T A + + + AV WL+QCPDE G+F E L+ L
Sbjct: 413 DLGKDRGDCLPLHVTAKEGFCRPLERLLLAGAKVDCVDRVGRSALHVACVYNHEGAVETLLQHHASTSLLCDEGLSPWDVVAADALERRQRKSMSFTSNLRRPSTLNTVETEVADRIYSILQRSSSWGRRGWLVMMRARRLGPEQVLGTSMSLLPSTTTSHEG-QGASLHDGWEAENI-DRDCSPPTTGWKVNAAADKRETPPGGHGEEHRKSAGPGRMTEARECA-------------WKGAVVWLLQCPDECGVFHEVLSFL 661
BLAST of mRNA_Ecto-sp13_S_contig1286.2356.1 vs. uniprot
Match: D7FVJ3_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ3_ECTSI) HSP 1 Score: 127 bits (320), Expect = 2.920e-28 Identity = 98/269 (36.43%), Postives = 126/269 (46.84%), Query Frame = 1
Query: 919 GNERVGILPLHDAAQHHSCGAMQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKPLLRYNARVMLLCDDGLSPFDVVAIAVLQRRQSNQSWVLR------------RRLSTLNVNETSVADRNLEMLRRACAWERRAWLILMRRRVARDPLAAGSSSRPPSFLESAFGDQTATPHDSETKEDANDGGCEQPVHGDIDLTG--ASPRGSAAPSEAIEGRTGHAFAQQTPAVDSSSCNDGVKVQVCDSLRC--AVEWLVQCPDEAGIFR 1677
G +R PLH AA+ C ++RL+ AGA V +D GRSALHVAC +N EGAV+ LLR++A LLCD+G SPFD+VA+ L+ RQ R TLN ETSVADR MLR A W RR WL++MR R G+S S + D E +DG + D L G + R AP + Q A+D D +RC AV WL+ PD++G+FR
Sbjct: 164 GKDREECPPLHVAAKKGFCRPLERLLLAGAKVDCVDRVGRSALHVACFYNREGAVEVLLRHHASTSLLCDEGRSPFDMVAVDALETRQGRAMXXXXXXXXXXXXXGTSRTPCTLNAVETSVADRICGMLRNASKWGRRGWLVMMRARHLDATQVLGTSMSLLSLSTRRWKDGK--------NESLHDGLATEDTDHDCALGGQCSEQRVPTAPDNPV---------QAGDAIDGGQARD---------IRCRGAVVWLLHRPDQSGVFR 406
BLAST of mRNA_Ecto-sp13_S_contig1286.2356.1 vs. uniprot
Match: A0A6H5JYG4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYG4_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.190e-18 Identity = 66/163 (40.49%), Postives = 87/163 (53.37%), Query Frame = 1
Query: 850 LYLAAAKNKEGTMNLLLATGADLGNERVGILPLHDAAQHHSCGAMQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKPLLRYNARVMLLCDDGLSPFDVVAIAVLQRRQSN-QSWVLRRRLS-------TLNVNETSVADRNLEMLRRACAWERRAWLILM 1314
L +A K E + LA GA + N + ++ ++RL AGA V +D GRSALHV C +N EGAV+ LLR++A LLCD+G SP D+VA+ L+ RQ L R + T N ETSVADR MLR + W RR WL++M
Sbjct: 789 LSVAVQKGHEEMVRERLAAGASVSNTGESFR----TPEENNKAPLERLPLAGAKVDCVDRGGRSALHVTCFYNHEGAVEVLLRHHASTSLLCDEGRSPCDMVAVDGLETRQGGAMGRALGRSMGGTTRFPCTSNAVETSVADRICGMLRSSSMWGRRGWLVMM 947
BLAST of mRNA_Ecto-sp13_S_contig1286.2356.1 vs. uniprot
Match: A0A432F1V5_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A432F1V5_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 8.470e-5 Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 778 LAAGADVNNAGHNDQTRMPFAN------SPLYLAAAKNKEGTMNLLLATGADLG--NERVGILPLHDAAQHHSCGAMQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKPLLRYNARVMLLCDDGLSPFDVVAIAVLQRRQSNQSWVLR---RRLSTLNVN 1233
LAA D + H Q P + SPL++AA KNK + +LLA A+L ++ + L+ A H S A+++L++ G G +A+HVA ++ C+ ++ L + LC DG +P D A + +R S + R ++ +TL+V+
Sbjct: 57 LAASDDTDALRHALQLGQPIESLNALGQSPLHVAAIKNKPANIGVLLAFRANLHAKTQKEKVDALYLACAHDSRDAVKQLVAKGGKTDSTAPNGWTAVHVAAINGCDAVLQLLHDLGKDLSPLCPDG-TPLD---FARIHKRNSTVKLLTRLGAKKGATLSVH 215 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1286.2356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1286.2356.1 >prot_Ecto-sp13_S_contig1286.2356.1 ID=prot_Ecto-sp13_S_contig1286.2356.1|Name=mRNA_Ecto-sp13_S_contig1286.2356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=290bp MPFANSPLYLAAAKNKEGTMNLLLATGADLGNERVGILPLHDAAQHHSCGback to top mRNA from alignment at Ecto-sp13_S_contig1286:5850..7547- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1286.2356.1 ID=mRNA_Ecto-sp13_S_contig1286.2356.1|Name=mRNA_Ecto-sp13_S_contig1286.2356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1698bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1286:5850..7547- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1286:5850..7547- >mRNA_Ecto-sp13_S_contig1286.2356.1 ID=mRNA_Ecto-sp13_S_contig1286.2356.1|Name=mRNA_Ecto-sp13_S_contig1286.2356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1286:5850..7547- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |