mRNA_Ecto-sp13_S_contig1286.2357.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1286.2357.1
Unique NamemRNA_Ecto-sp13_S_contig1286.2357.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1286.2357.1 vs. uniprot
Match: A0A6H5JHC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.320e-16
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 2 
Query:  149 TSGQVNPPLPPTPDAVAHREQVRGLWKEIMRIAADNHRRDFRGIQHGGAVNAP 307
            T GQVNPP PPTPDAVAHR QVRGLW E+MRIA D+HRRDFR  +  G  + P
Sbjct:    8 TPGQVNPPPPPTPDAVAHRGQVRGLWNELMRIADDDHRRDFRYSESNGLHSQP 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1286.2357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHC8_9PHAE2.320e-1669.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1286contigEcto-sp13_S_contig1286:9436..10080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size318
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-05_006440.1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.9882517-CDS-Ecto-sp13_S_contig1286:9435..94791681462687.9882517-CDS-Ecto-sp13_S_contig1286:9435..9479Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1286 9436..9479 -
1681462688.000006-CDS-Ecto-sp13_S_contig1286:9807..100601681462688.000006-CDS-Ecto-sp13_S_contig1286:9807..10060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1286 9808..10060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.0162754-UTR-Ecto-sp13_S_contig1286:10060..100801681462688.0162754-UTR-Ecto-sp13_S_contig1286:10060..10080Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1286 10061..10080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1286.2357.1prot_Ecto-sp13_S_contig1286.2357.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1286 9436..10060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1286.2357.1

>prot_Ecto-sp13_S_contig1286.2357.1 ID=prot_Ecto-sp13_S_contig1286.2357.1|Name=mRNA_Ecto-sp13_S_contig1286.2357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MVEPSSCKVLSTFAMTSLALYAYNDCGTKPSTCSSRMTTTYGVPLGRLTP
LCRRRLTRWPTGSKYEACGRRSCALLPTIIGVTSVGYNTEVLSTPLAID
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mRNA from alignment at Ecto-sp13_S_contig1286:9436..10080-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1286.2357.1 ID=mRNA_Ecto-sp13_S_contig1286.2357.1|Name=mRNA_Ecto-sp13_S_contig1286.2357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1286:9436..10080- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAATTCCGACTTGTCGTGATGGTGGAGCCCTCCAGCTGCAAAGTCTTG
AGTACGTTCGCGATGACATCGCTTGCATTGTATGCATATAACGATTGCGG
AACCAAACCATCCACTTGTTCTTCGCGTATGACGACCACCTATGGTGTAC
CTCTGGGCAGGTTAACCCCCCTCTGCCGCCGACGCCTGACGCGGTGGCCC
ACAGGGAGCAAGTACGAGGCCTGTGGAAGGAGATCATGCGCATTGCTGCC
GACAATCATAGGCGTGACTTCCGGTACAGCGAGAGTAATGGACTCCACCG
CAACCAGTCATGCTGCGTCGGTGCATTCCTCTGTTCATGGCGTCCGTTGA
CGCTGACCTGAACGCTGTTTGCCAGCCGTGTAGCGACCCCGCCCTGATCG
AACCCCACGGAGGGAACATTCTTGATCTCTTCATTCGGCTGGCCTCGGAG
GCGCGTTGGAAAAAGTTGTGGTTTTCTGTGTTGGAGATTTCCGCGTCCGG
CCGCAGGGCTGTCGCGTTCGACATGCTGTTTTCCCTCCGCCCGGAAGAAT
GATGTAATCATCAGCAAAACGTCGTTCATCTCTTGCGTCGCGTCACTACA
GTGGGATACAACACGGAGGTGCTGTCAACGCCCCTAGCGATTGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1286:9436..10080-

>mRNA_Ecto-sp13_S_contig1286.2357.1 ID=mRNA_Ecto-sp13_S_contig1286.2357.1|Name=mRNA_Ecto-sp13_S_contig1286.2357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1286:9436..10080- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGAGCCCTCCAGCTGCAAAGTCTTGAGTACGTTCGCGATGACATC
GCTTGCATTGTATGCATATAACGATTGCGGAACCAAACCATCCACTTGTT
CTTCGCGTATGACGACCACCTATGGTGTACCTCTGGGCAGGTTAACCCCC
CTCTGCCGCCGACGCCTGACGCGGTGGCCCACAGGGAGCAAGTACGAGGC
CTGTGGAAGGAGATCATGCGCATTGCTGCCGACAATCATAGGCGTGACTT
CCGTGGGATACAACACGGAGGTGCTGTCAACGCCCCTAGCGATTGAT
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