mRNA_Ecto-sp13_S_contig12851.2351.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12851.2351.1
Unique NamemRNA_Ecto-sp13_S_contig12851.2351.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12851.2351.1 vs. uniprot
Match: D8LKY8_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY8_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.000e-20
Identity = 102/123 (82.93%), Postives = 106/123 (86.18%), Query Frame = 1 
Query:   10 TTPRVPEDITVNTPVAPSPEAVLSAPGRKTFSGGXXXXXXXXXXXXKSGSLGFGFSGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---HALSLAVDDPPSPYETKGDED 369
            TTPRVP++ITVNTPVAPSPEAVLSAPGRKTFSGG            KSGSLGFGFSGAD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   HAL+LAVD+PPSP ETKGDED
Sbjct:  709 TTPRVPDNITVNTPVAPSPEAVLSAPGRKTFSGGGGAARRSS----KSGSLGFGFSGADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALTLAVDNPPSPDETKGDED 827
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12851.2351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKY8_ECTSI2.000e-2082.93Pleckstrin homology (PH) domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12851contigEcto-sp13_S_contig12851:84..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score95.5
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog2880.D8LKY8
Model size372
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
EggNOG OGsCOG5422@1,KOG4424@2759
Cds size369
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.772626-CDS-Ecto-sp13_S_contig12851:83..4521681462687.772626-CDS-Ecto-sp13_S_contig12851:83..452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12851 84..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12851.2351.1prot_Ecto-sp13_S_contig12851.2351.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12851 84..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12851.2351.1

>prot_Ecto-sp13_S_contig12851.2351.1 ID=prot_Ecto-sp13_S_contig12851.2351.1|Name=mRNA_Ecto-sp13_S_contig12851.2351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
ASSTTPRVPEDITVNTPVAPSPEAVLSAPGRKTFSGGGGGSGGAARRSSK
SGSLGFGFSGADDEQEPAPTLTQQQRRQRAFLSTTATTVELGKSGGGSSS
SSHALSLAVDDPPSPYETKGDED
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mRNA from alignment at Ecto-sp13_S_contig12851:84..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12851.2351.1 ID=mRNA_Ecto-sp13_S_contig12851.2351.1|Name=mRNA_Ecto-sp13_S_contig12851.2351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=370bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12851:84..453+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGCTCGACGACGCCGCGGGTGCCCGAGGACATCACCGTGAACACGCC
GGTGGCCCCAAGCCCCGAGGCCGTGCTTTCGGCACCCGGCCGAAAGACGT
TCAGTGGGGGTGGCGGCGGTAGTGGCGGCGCGGCACGCCGGTCCAGCAAG
AGCGGCAGCCTAGGGTTCGGCTTCTCCGGCGCGGACGACGAGCAAGAACC
GGCGCCGACCCTAACCCAGCAGCAGCGGCGGCAGCGGGCCTTCCTGTCGA
CGACGGCGACGACGGTGGAGCTCGGAAAGAGCGGCGGCGGCAGCAGCAGC
AGCAGCCACGCGCTTTCCCTCGCCGTGGACGACCCTCCCAGCCCGTACGA
AACGAAGGGCGACGAGGACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12851:84..453+

>mRNA_Ecto-sp13_S_contig12851.2351.1 ID=mRNA_Ecto-sp13_S_contig12851.2351.1|Name=mRNA_Ecto-sp13_S_contig12851.2351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12851:84..453+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGCTCGACGACGCCGCGGGTGCCCGAGGACATCACCGTGAACACGCC
GGTGGCCCCAAGCCCCGAGGCCGTGCTTTCGGCACCCGGCCGAAAGACGT
TCAGTGGGGGTGGCGGCGGTAGTGGCGGCGCGGCACGCCGGTCCAGCAAG
AGCGGCAGCCTAGGGTTCGGCTTCTCCGGCGCGGACGACGAGCAAGAACC
GGCGCCGACCCTAACCCAGCAGCAGCGGCGGCAGCGGGCCTTCCTGTCGA
CGACGGCGACGACGGTGGAGCTCGGAAAGAGCGGCGGCGGCAGCAGCAGC
AGCAGCCACGCGCTTTCCCTCGCCGTGGACGACCCTCCCAGCCCGTACGA
AACGAAGGGCGACGAGGAC
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