mRNA_Ecto-sp13_S_contig12845.2348.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12845.2348.1
Unique NamemRNA_Ecto-sp13_S_contig12845.2348.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12845.2348.1 vs. uniprot
Match: D8LRX4_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX4_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 4.880e-103
Identity = 141/164 (85.98%), Postives = 148/164 (90.24%), Query Frame = 1 
Query:    1 MNLPAGWETGKDATGRTFYMNHETQQTQWNHPDDPTPESGRPPSYEPPSKDLYAAQGVATATAVSAPQYVETVGAEPS-IQYTTCACVGHHPHASGVVTTQPGPGHTVIVVQEGNRNIPPNAPDGGQWRQERYCGLITWLVALFVVPFIGCCMPCCPCDERTVS 489
            MNLPAGWE+G DATGRTFYMNHET+QTQWNHP DPTPES  PPSYEPPS  LYA QGV TATAV+APQYVETVGA+P+ IQ TTC   GHHP A GVVTTQPGPGHTVIVVQEGNRNIPPNAPDGGQW+QERYCGLITWLVALFVVPFIGCCMPCCPCDERT +
Sbjct:    1 MNLPAGWESGTDATGRTFYMNHETRQTQWNHPADPTPESRPPPSYEPPSNGLYAEQGVVTATAVTAPQYVETVGAQPAGIQLTTCTQAGHHPQAGGVVTTQPGPGHTVIVVQEGNRNIPPNAPDGGQWKQERYCGLITWLVALFVVPFIGCCMPCCPCDERTAA 164
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BLAST of mRNA_Ecto-sp13_S_contig12845.2348.1 vs. uniprot
Match: A0A6H5JEI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEI3_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 6.140e-94
Identity = 134/164 (81.71%), Postives = 139/164 (84.76%), Query Frame = 1 
Query:    1 MNLPAGWETGKDATGRTFYMNHETQQTQWNHPDDPTPESGRPPSYEPPSKDLYAAQGVATATAVSAPQYVETVGAEPSIQYTTCACVGHHPHASGVVTTQPGPGHTVIVVQEGNRNIPPNAPDGGQWRQERYCGLITWLVALFVVPFIGCCMPCCPCDERTVSV 492
            MNLPAGWE GKDATGRTFY+NHETQQTQWNHP DPTPE  RPPSYEPPS DLY AQGVATATAV AP +V+ VGA+P IQ       GHHPHAS VVTTQPGPGHTV VV    RN PPNAPDGGQWRQERYCGLITWLVALFVVPFIGCCMPCCPCDERTV +
Sbjct:    1 MNLPAGWEIGKDATGRTFYINHETQQTQWNHPADPTPELRRPPSYEPPSTDLYVAQGVATATAVPAPLFVQAVGAQPGIQ------AGHHPHASEVVTTQPGPGHTVTVV----RNCPPNAPDGGQWRQERYCGLITWLVALFVVPFIGCCMPCCPCDERTVYI 154
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BLAST of mRNA_Ecto-sp13_S_contig12845.2348.1 vs. uniprot
Match: A0A813G7E1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G7E1_POLGL)

HSP 1 Score: 58.2 bits (139), Expect = 7.790e-8
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  349 IPPNAPDGGQWRQERYCGLITWLVALFVVPFIGCCMPCCPCDERTV 486
            +P  AP GG W  E+YCG+IT L+AL + PF+ C    CPCDER V
Sbjct:   14 VPYGAPPGGYWATEKYCGIITILIALCICPFVCC----CPCDERDV 55
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BLAST of mRNA_Ecto-sp13_S_contig12845.2348.1 vs. uniprot
Match: A0A813IVK9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IVK9_POLGL)

HSP 1 Score: 59.7 bits (143), Expect = 1.430e-7
Identity = 35/86 (40.70%), Postives = 44/86 (51.16%), Query Frame = 1 
Query:  235 IQYTTCACVGHHPHASGVVTTQPGPGHTVIVVQEGNRNIPPNAPDGGQWRQERYCGLITWLVALFVVPFIGCCMPCCPCDERTVSV 492
            +Q    A VG     SG    Q   G+ +  V      +P  AP GG W  E+YCG+IT L+AL + PF+ C    CPCDER V V
Sbjct:  134 VQPAPSAMVGQPVVVSGGQAMQAPGGYMLPPVP-----VPYGAPPGGYWATEKYCGIITILIALCICPFVCC----CPCDERDVYV 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12845.2348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LRX4_ECTSI4.880e-10385.98WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JEI3_9PHAE6.140e-9481.71WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A813G7E1_POLGL7.790e-854.35Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813IVK9_POLGL1.430e-740.70Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12845contigEcto-sp13_S_contig12845:99..4790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size492
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-08_002780.1
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.5228622-CDS-Ecto-sp13_S_contig12845:98..1531681462687.5228622-CDS-Ecto-sp13_S_contig12845:98..153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12845 99..153 +
1681462687.5314658-CDS-Ecto-sp13_S_contig12845:1863..20481681462687.5314658-CDS-Ecto-sp13_S_contig12845:1863..2048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12845 1864..2048 +
1681462687.5393627-CDS-Ecto-sp13_S_contig12845:2865..28831681462687.5393627-CDS-Ecto-sp13_S_contig12845:2865..2883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12845 2866..2883 +
1681462687.5473356-CDS-Ecto-sp13_S_contig12845:3099..31591681462687.5473356-CDS-Ecto-sp13_S_contig12845:3099..3159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12845 3100..3159 +
1681462687.5572622-CDS-Ecto-sp13_S_contig12845:4616..47901681462687.5572622-CDS-Ecto-sp13_S_contig12845:4616..4790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12845 4617..4790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12845.2348.1prot_Ecto-sp13_S_contig12845.2348.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12845 99..4790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12845.2348.1

>prot_Ecto-sp13_S_contig12845.2348.1 ID=prot_Ecto-sp13_S_contig12845.2348.1|Name=mRNA_Ecto-sp13_S_contig12845.2348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MNLPAGWETGKDATGRTFYMNHETQQTQWNHPDDPTPESGRPPSYEPPSK
DLYAAQGVATATAVSAPQYVETVGAEPSIQYTTCACVGHHPHASGVVTTQ
PGPGHTVIVVQEGNRNIPPNAPDGGQWRQERYCGLITWLVALFVVPFIGC
CMPCCPCDERTVSV
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mRNA from alignment at Ecto-sp13_S_contig12845:99..4790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12845.2348.1 ID=mRNA_Ecto-sp13_S_contig12845.2348.1|Name=mRNA_Ecto-sp13_S_contig12845.2348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12845:99..4790+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTGCCAGCGGGATGGGAAACCGGAAAGGATGCCACCGGACGAAC
GTTCTGTGAGTTTTACCCATGAGCTGGAACGAACGCGGTCATAATGTGAA
ATAATTCTTATCTTCTTCGAGACCCCAATGCTCCCTCTCTTCGTGTCACC
GCCCATGCTCATCGCCCGCTTCACCACCTTTTCTTTGCTCTCTCATGTTC
TGTTACGAAGGACCACGTGAACACTCTGCCAACCTCGCCCCCATATTTTG
CCTGCAGCACCATCACCTGTATTCGACGCCCCGCTGCAGTAGTCCGCACG
CTTGGCTTTTTGAGAGCAACGCGCACACACGTCGGTTGTAGTATACTGCA
GCAGCAGCAAACAGGACTCGCCCCTATTCTTGCACCCTTAAAAACCTAGT
GGTCGGCAGCGGCAGATCCGACGGCTCTTCGGGCAGCATGTACGTACGTG
CGTGTTTGGTGAACTGGCCGGTTCATGCTAGGACACCGAATGTTTGCCTT
CTCTGTTTTGGCTGTTGACGCTCCCTGACCAAACACGTACACGAAGGACC
ACAATCATGTGCAATTTTCGGGTCTTCCAAGCGTTATTTTCATATTTTAT
TCGTAGGCTATCGGTATTACTTGCGCCATGAAATATCCGCCCTGGTTTGC
GGTAACGTGCAACCGTCGGTGCTCCGCCGGTTCTTGTTCTACCGCCTCCG
CCAAAGTCGGGTACAGCGGAATAGTACGAAACACACCGAAAAATCCGCCC
CTCTACAATGTATGCGAGGTACATATGGACGCCGAAAAATCACAGCGGAT
CGATGCAGTTCCTCCTCGGTACCAGTACCCGTAGTAGCCTTTGGAATGCC
GTCCGTGGTTTGTGTGCGAACGCTCCGTGAGGCGCCCTATCAAATTCCTA
AGAACTAGGTAACTCATAAGTAGAGGGACGCAAAAAAGAAAAAAATCAAT
CCCGGGGCTAACTCGAAGGTTTTTACTACCCCGGCCGTATTGTTTTTGTT
GGAGGGGATATACTTGAAGCCGTGCATGCCGTAGTCGTTGGACCTTTGGA
CTCACATCCCTACAAAGCCGGGACGGAGCGATATGCCATGTTCTCACCGG
ACCAGGTTATCACATCACCAAGCTCCAAGCGCCGTGAGGGAGCCGGCGAG
CCGCATGGAGGGTACGCTGCATCCTGCGAAGGGTGTTCGGCATCTTTGCT
TACGTGCTTGACACGGACGACACCTGTGAATGGCTTATTTTTACTTTGGC
GATTTGACTTCCAGATACAGCTAAGGCACTGTGCCACTACCTCGAGGGTG
CTTGACCAATTTCACGCAACGTGGTGCGATCATCCCTCTGCCCGGAGTGA
GGGTTCTCCACCCCACACAATATTATCTACCCGACCACCGTCATGCTTAC
CGCAAAACTGAGCGGTAAACCTGGTTGCCGAGCTCACAAAGCGGTCGACG
TGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCACAGGGGGGGGGAGG
GGGGCTAACTCATCGGGGGGGGCGTTCTCAAAGGATACATTGGGATAAGA
GGTCCCAGCTCATACTTGCGGCTGCTGATTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGTTGCCTTTGCTCCTGCTGCTTATCCTCGTCTTGTTGTAT
GTGCTGCTGCCGCTGCCCGCCACCGCTGACGCTGCTGCTGACGCTGCTAC
TGACGCTGCTGCTGCTTCAAATGCTGCTGCTGCCGCTACCTCTGATGGTG
CTGCCAACGTTCCAGATATGAACCACGAAACCCAGCAGACCCAGTGGAAC
CACCCGGACGATCCCACGCCCGAGTCAGGACGACCGCCGAGCTACGAGCC
CCCGAGCAAAGACCTCTACGCCGCGCAAGGAGTTGCAACCGCCACGGCGG
TGTCGGCACCGCAGTACGTGGAGACAGTCGGAGCGGAACCATCAATTCAG
GTACAGTAAAAGTAAGAAGAAGCGCAGTAAGACTGTACCTGGGTGTATAG
ATTTGTCAATTGTTATTGTTGGTGCTTTGAGGTTCGCTGGGCTGTTCGAG
GTTGGGAAAACTCACTTGACGGCGGCTGTCAGCTGATTCATACCAACACA
CGTGCTTTTCTTTCATCTTGCATCCCGCCTTCATGACACTGCTACAGCCC
ACTCACGAGGCTCGCCTTCTTTACATTACTAGAGTGCCGTACGGTGAACA
GCGGTAAACGCCGCGTACCACCGACCGCCACCGCAACGAACAGCGGCGTA
TGCGTAGCGTTGCAGTTTCCCGTATGTTGCATAAGACTGGATGCATAAGA
TGTCACACCCGCTGGACCGATTTTCGAAGGTCGAAAACTCCACGACAAAG
ACGAAACTGAAATGGAAGTAAACGTTTCGGAGAGATCTCGACGAGACGGC
CGCCGTTTTCGGCACCGTCACCGCTTTTCCTGCCGAGATATGGAGCCTCG
AAATTCGGTTCAGGGGGTGTGATATCTTATGCGACCTACGGTAGCTAGTT
GCGTATGTCTCGACTTGTCTCGAACTTATTGATGTGGTGGTTTTTCTGGA
CCTCGCCCCCTCCTCTCTACGCGGGCCTCATTTGACCCCCCCCAAGTAGC
ATCACACGCGAGGTAGTGGGTTATTAGCTGCTGTGATGCCTATTCTCACC
CCCAACCCCCACGGCTTGTATCGTACTTCTTGGAGCAACTTGCCGCCGAT
GTCATGTCGGGGGTTGCGCCGTACTGCTGTAGCACTTCCCAAGTCGACTC
CTCGTTCCCTTCCACAGTACACGACCTGCGCCTGCGTATAAAACGGTTTT
TGAGCAAAATAGTCCAAGGTGGTCCTTTGGTTCGTTTTCCGTATGTATGT
GTGTGTCTCTCGCTGCTTCATCGCTCTCTCGTGCGGAGTGATTAGTTGGG
ATGAACTTGTCGTGCCCCCGTCCTTCGCCCCCCCGATTTTGTTTCCGCGC
GCTCCGCCGTCCGGGCCGTCTCCCGAACAATCGTTGATCACGTGCACCCA
GGTCGGTCATCATCCTCACGCCAGCGGGGTGGTCACCACGCAGCCCGGTC
CTGGACACACGGTAAGGATGGGGATTATGGTGTTCGATTTGTTTCCTAGG
TCATCACCTCCTTTTTTTTTGTTGTAACATGTTTACTCACCACCATGTTC
ACGGCGATACTGTTCAAACGTCATTCACCGTCGTTCGGGGGGGGGGTGCT
TGAGGCAGTGATGTCAGGTTAAGTGGCTGGGCCGCGGATGCCCCCCGGCC
GGGACTGTTCCTGGTCACCGACCCCCCCCCGTTTTCCTCCTCAAGTGGAG
GAGTGTCCCCCCTCGGGATAACGTTGAGGTGCAAAATACAATTGACAAAG
GGGGCACGGATGGACCCCCCGCCCTGCCCGCTTCCCTATGTCGCGAAAAA
AGCAGGTGTCCCCGGCGTGAACCCGTTTTCTTAGGTATCATATATCCCTA
CAATATGACCATGCCTGGGAAGCGTGGTTGGGAGTGGATTTCGTCTACCG
TAAACTACGGAGTTTTCCCCCCGTAGTACAGATTTCCCTCCCCCCCGTTA
CCTTTTCGGCCTGGAAGTATGGTTTCGTTGATTTAGCCCCGGGGTAGATC
GTTTTCGACCAAAAAAAAAATAGATCCCCCGGGGTATTTCAATTTCCCCC
CGGGGTACCAGTTTTCCCACGAGTTCCCCCCGGGGGGGATGTATTTCCCT
TCTTTTCTGAGTCGATGTTATTGCATCGCGGAGCACAAAAAGCATGATAT
GGGACGGGAAATTCATCTGCAGATCTCCGCTTCGAGCGAGATTAGGTGTA
CCGTTTGTCACTTGGCTCTCGCCGTTGTTTTATGGGTGAAATGCTTTCGT
TTTCTTGTCTATTTCTAGCGTTTGTCATCCCTCGAATCAGCTGAAATGTA
CCATAGCATGCTGACGAAACCTTGCGCACAAGGGGGAAACACAATCGCAT
TCATTTCTGGATCTCGCAAATCAAGACAGAACCGAACCATAAAATAGCTT
ATTCCTTTGGACAAACTGCGAATTCTTGTGCATGAGCTCAGGCAATGGTA
CCTCTCTTGCGACCCGACAAAAACACCCACACCGCCTGCCATATGCTCGC
CGTCTTTCTTCTCTTTGTCTTCGTTGCTCGTACGTTCCTCCTCCCTCTGC
TTGTTGGACGCTTGCACGTAAACCCTATCCATCTCAGTTTCGCTACTCTG
TGTGTGTGTGTGTGTGTGCAGTTTCGCTACTCTCTGTGTGTGTGTGGTGT
GTGGACCATCAACATTTTGCACAACCCCCCGGGGGGGGGCTTCCCCCCGG
GGTAGCGTTGGGAAAAAAAAAAGTAACCCCCCTGGTACGTCAATTTCCCC
CCGGGGGGGTTCGATTCAGAAAAAAACGATCCCCTCCCCGGGGGGAAAAC
TCCGTAGTTTACGGTACTACGGGAAAAGTGCGAAGTCTAAGCGAACAGAG
GCAGCGAGTAAAAACATGGACAAAAATCTTATTCAAGACAAGACCGAACG
GCACGCGCTCAAAAACAGGTGATTGTGGTACAGGAGGGGAACCGGAATAT
CCCGCCAAACGCGCCGGATGGTGGCCAGTGGAGGCAGGAGAGGTACTGCG
GGCTCATCACGTGGCTGGTCGCCCTCTTTGTTGTCCCGTTCATCGGCTGC
TGCATGCCGTGTTGTCCGTGCGACGAGCGGACAGTGAGTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12845:99..4790+

>mRNA_Ecto-sp13_S_contig12845.2348.1 ID=mRNA_Ecto-sp13_S_contig12845.2348.1|Name=mRNA_Ecto-sp13_S_contig12845.2348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12845:99..4790+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTGCCAGCGGGATGGGAAACCGGAAAGGATGCCACCGGACGAAC
GTTCTATATGAACCACGAAACCCAGCAGACCCAGTGGAACCACCCGGACG
ATCCCACGCCCGAGTCAGGACGACCGCCGAGCTACGAGCCCCCGAGCAAA
GACCTCTACGCCGCGCAAGGAGTTGCAACCGCCACGGCGGTGTCGGCACC
GCAGTACGTGGAGACAGTCGGAGCGGAACCATCAATTCAGTACACGACCT
GCGCCTGCGTCGGTCATCATCCTCACGCCAGCGGGGTGGTCACCACGCAG
CCCGGTCCTGGACACACGGTGATTGTGGTACAGGAGGGGAACCGGAATAT
CCCGCCAAACGCGCCGGATGGTGGCCAGTGGAGGCAGGAGAGGTACTGCG
GGCTCATCACGTGGCTGGTCGCCCTCTTTGTTGTCCCGTTCATCGGCTGC
TGCATGCCGTGTTGTCCGTGCGACGAGCGGACAGTGAGTGTT
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