prot_Ecto-sp13_S_contig12831.2337.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12831.2337.1
Unique Nameprot_Ecto-sp13_S_contig12831.2337.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length145
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12831.2337.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 4.260e-5
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 0 
Query:   97 MSLTMGTLGG---GWRR---ARLEHYLHWFWVVFFGVI 128
            +SLTMGT GG   G  R   ARLEHYLHWFWVVFFGVI
Sbjct:  423 LSLTMGTWGGRGGGGERERWARLEHYLHWFWVVFFGVI 460
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12831.2337.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1C0_ECTSI4.260e-573.68Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..91
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 116..133
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 111..115
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..110
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 134..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12831contigEcto-sp13_S_contig12831:2054..4922 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12831.2337.1mRNA_Ecto-sp13_S_contig12831.2337.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12831 1721..4922 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12831.2337.1 ID=prot_Ecto-sp13_S_contig12831.2337.1|Name=mRNA_Ecto-sp13_S_contig12831.2337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
RVERQDRQVVERFRGTLSHDFQRSRELGEVRVGAPQRSVCPQRLRRQICE
GVRREDGEVCAKVGGRTRALCNSASDAQDVPYRGIRGRRSGVTRLGMSLT
MGTLGGGWRRARLEHYLHWFWVVFFGVILCKCVESSDQNVFRMQ*
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