mRNA_Ecto-sp13_S_contig1283.2334.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1283.2334.1
Unique NamemRNA_Ecto-sp13_S_contig1283.2334.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1283.2334.1 vs. uniprot
Match: D7FRX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX6_ECTSI)

HSP 1 Score: 652 bits (1683), Expect = 2.470e-230
Identity = 319/347 (91.93%), Postives = 327/347 (94.24%), Query Frame = 1 
Query:  136 MGRKVIRPQPRAEPRASVGKRRDHSNVWKPNRNPLLEQMKPMPPATFVKGASLVAREATFDPLRGAFVTLARPNDPELNLPEPRRGLGAMGLYKDPGLVKDVMSEAGGRQPFKLPKMHKRRAPPGTRLTNDLGTVMQMNELTANEKAVLWSNYQRAMERSLQKEGDLESVTWRHRATHKPAPPWVHHRWPTKPIARAPPPYGTEDVPESLSPAAVLRSGRRACKGFNQDQGERLLTWKEMKGDRIDPPPQQKLPPSYEADDAHMDAMMDEERSTRLGVPMHKQRRHVPGHVGEILGAIRPIGGRERRELHALEMHEFTVPKKPTPPPAAVTGRTPYRRPSQHQFDRQ 1176
            MGRKVIRPQPRAEPRA VGKRRDHSNVWKP+RNPLLEQMKPMPPATFVKGASLVAREATFDPLRGAFV LARPN PE+NLPEPRRGLGA+GLYKDPGLVKDV+S A GRQPFKLPKMHKRR PPGTRLTNDLGTVMQMNELTANEKAVLWSNYQRAMERSLQKEGDLESV+WRHRATH+PAPPWVHHRWPTKPIARAPPPYGTEDVPESLSPAAVLRSGRRACK FNQDQGERLLTWKEMKGDR DPPP +KLPPSYEADDAHMDAMMD+ERS RL VPMHKQRRHV GH GEI GAI PIG RERREL ALEMHEFTVPKKPTPPP  VTGRTPYRRPSQHQ DRQ
Sbjct:    1 MGRKVIRPQPRAEPRAYVGKRRDHSNVWKPSRNPLLEQMKPMPPATFVKGASLVAREATFDPLRGAFVLLARPNAPEVNLPEPRRGLGAIGLYKDPGLVKDVLSAAEGRQPFKLPKMHKRRPPPGTRLTNDLGTVMQMNELTANEKAVLWSNYQRAMERSLQKEGDLESVSWRHRATHEPAPPWVHHRWPTKPIARAPPPYGTEDVPESLSPAAVLRSGRRACKSFNQDQGERLLTWKEMKGDRTDPPPPRKLPPSYEADDAHMDAMMDDERSMRLDVPMHKQRRHVSGHAGEISGAISPIGDRERRELRALEMHEFTVPKKPTPPPPTVTGRTPYRRPSQHQIDRQ 347
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BLAST of mRNA_Ecto-sp13_S_contig1283.2334.1 vs. uniprot
Match: A0A6H5KKV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV0_9PHAE)

HSP 1 Score: 555 bits (1431), Expect = 1.030e-192
Identity = 271/306 (88.56%), Postives = 280/306 (91.50%), Query Frame = 1 
Query:  250 MKPMPPATFVKGASLVAREATFDPLRGAFVTLARPNDPELNLPEPRRGLGAMGLYKDPGLVKDVMSEAGGRQPFKLPKMHKRRAPPGTRLTNDLGTVMQMNELTANEKAVLWSNYQRAMERSLQKEGDLESVTWRHRATHKPAPPWVHHRWPTKPIARAPPPYGTEDVPESLSPAAVLRSGRRACKGFNQDQGERLLTWKEMKGDRIDPPPQQKLPPSYEADDAHMDAMMDEERSTRLGVPMHKQRRHVPGHVGEILGAIRPIGGRERRELHALEMHEFTVPKKPTPPPAAVTGRTPYRRPSQHQF 1167
            MKPMPPATFVKGASLVAR+ATFDPLRGAFV LARPNDPELNLPE RRGLGAMGL+KD GLVKDV+SEA GRQPFKLPK+HKRR PPG RLTNDLGTVMQMNELTANEKA LWSNY+RAMER LQKEGDLESVTWRHR TH+PAPPW HHRWPTK IARAPPPYGTEDVPESLSPAAVLRSGRRACK FNQDQGERLLTWKEMKGDR+DPPPQ+KLPPSYEADDAHMDAMMD+ERS RL VPMHKQRRHVPG VGEI GAIRPIG RERREL ALE HEFTVPKKPTPPP A T RTPY RPS H  
Sbjct:    1 MKPMPPATFVKGASLVARQATFDPLRGAFVVLARPNDPELNLPERRRGLGAMGLFKDNGLVKDVLSEAEGRQPFKLPKVHKRRPPPGIRLTNDLGTVMQMNELTANEKAALWSNYERAMERFLQKEGDLESVTWRHRVTHEPAPPWFHHRWPTKQIARAPPPYGTEDVPESLSPAAVLRSGRRACKSFNQDQGERLLTWKEMKGDRVDPPPQRKLPPSYEADDAHMDAMMDDERSMRLAVPMHKQRRHVPGQVGEISGAIRPIGDRERRELRALETHEFTVPKKPTPPPPAATARTPYLRPSHHSI 306
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1283.2334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRX6_ECTSI2.470e-23091.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKV0_9PHAE1.030e-19288.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1283contigEcto-sp13_S_contig1283:7760..12072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2079
Hectar predicted targeting categoryother localisation
Exons6
Cds size1044
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1283.2334.1prot_Ecto-sp13_S_contig1283.2334.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1283 8627..11172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462686.5256555-UTR-Ecto-sp13_S_contig1283:7759..78821681462686.5256555-UTR-Ecto-sp13_S_contig1283:7759..7882Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1283 7760..7882 +
1681462686.5345364-UTR-Ecto-sp13_S_contig1283:8614..86261681462686.5345364-UTR-Ecto-sp13_S_contig1283:8614..8626Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1283 8615..8626 +
1681462686.6009598-UTR-Ecto-sp13_S_contig1283:11172..120721681462686.6009598-UTR-Ecto-sp13_S_contig1283:11172..12072Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1283 11173..12072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462686.5431273-CDS-Ecto-sp13_S_contig1283:8626..87171681462686.5431273-CDS-Ecto-sp13_S_contig1283:8626..8717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1283 8627..8717 +
1681462686.5527909-CDS-Ecto-sp13_S_contig1283:9475..96931681462686.5527909-CDS-Ecto-sp13_S_contig1283:9475..9693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1283 9476..9693 +
1681462686.5628915-CDS-Ecto-sp13_S_contig1283:9966..101281681462686.5628915-CDS-Ecto-sp13_S_contig1283:9966..10128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1283 9967..10128 +
1681462686.5737264-CDS-Ecto-sp13_S_contig1283:10371..106561681462686.5737264-CDS-Ecto-sp13_S_contig1283:10371..10656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1283 10372..10656 +
1681462686.5904503-CDS-Ecto-sp13_S_contig1283:10884..111721681462686.5904503-CDS-Ecto-sp13_S_contig1283:10884..11172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1283 10885..11172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1283.2334.1

>prot_Ecto-sp13_S_contig1283.2334.1 ID=prot_Ecto-sp13_S_contig1283.2334.1|Name=mRNA_Ecto-sp13_S_contig1283.2334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=348bp
MGRKVIRPQPRAEPRASVGKRRDHSNVWKPNRNPLLEQMKPMPPATFVKG
ASLVAREATFDPLRGAFVTLARPNDPELNLPEPRRGLGAMGLYKDPGLVK
DVMSEAGGRQPFKLPKMHKRRAPPGTRLTNDLGTVMQMNELTANEKAVLW
SNYQRAMERSLQKEGDLESVTWRHRATHKPAPPWVHHRWPTKPIARAPPP
YGTEDVPESLSPAAVLRSGRRACKGFNQDQGERLLTWKEMKGDRIDPPPQ
QKLPPSYEADDAHMDAMMDEERSTRLGVPMHKQRRHVPGHVGEILGAIRP
IGGRERRELHALEMHEFTVPKKPTPPPAAVTGRTPYRRPSQHQFDRQ*
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mRNA from alignment at Ecto-sp13_S_contig1283:7760..12072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1283.2334.1 ID=mRNA_Ecto-sp13_S_contig1283.2334.1|Name=mRNA_Ecto-sp13_S_contig1283.2334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4313bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1283:7760..12072+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGGAAGCTCCCTTTTCTCTTTTTCTCTCTCCCCCCCAGATGAGCCTT
ACCCGGAGAGGGGCTTCTCGTATGTTCTGCACAATAAGTCGAGGCGTGGT
GTAATACGCTGCGGTAAATCAAGGTATTGCTTTTGCTTATTGTAGGCGTT
GAACCGCTGGCATCGTCAGCGGGTTGGTCTTTGGTGTGGGTGTTCGTCCA
CCTCTGGTGGAACAGGCTTGTCTCCGCCGAATAGATGCCAGTTCCACAGT
CGAAGGGGGTGTCTTGGAGTATTTGCATGTATTCCTTGGACGCCAACAAG
CAACTGACGTGTGAAAATATTTACCGTAGAGAGTATCAAGACGTTAGCGC
CTCGCACCCGGTGATGCGTTCTTCACCTCTCCCTCTTTCCTCGAGCTTTC
ACCAGGTTTTTCGCTGTCTAGTGTCATTAAGGCTGGCGGAGAGTGTTGCG
CGCGTTGGACCCCCGATTTTTTGCACAAGTCCATTCGAGCTGTGGAATGC
TTGTAACACCAGAAGCTGCGGTACATAATTAATGTACATGACATGTTGTA
AAAAGACAAACATACCATTCTCCCCCCGCCGTAAGTGCATAGCGCAAGTC
CTCCTAGGACAAAAACACAAGCACAGGACGTACACAAACAACTTTGATTG
CAGCGAGGGTCGCTGGAATTGCGTGTATCACTTTCGAAGATTCCATTCTT
GTGGGGTTTTGTCCACCGATTCTCTCGAAGCCTGCAATATGATGTGTGTG
TAGAGCGGGTATAGTATGTCCATACAGCACTCCGGCCATCCGCCTGGGTG
TCGCTTCGTCTATCACTCACCAGTTCCTTCGCTGTTCTGCGGCCGGTACA
ACCAGGGACAGCTGAGGATGGGTAGAAAGGTGATACGACCACAGCCTCGA
GCGGAACCACGGGCATCCGTTGGCAAAAGACGAGATCACTCCAACGTGTG
GAAGCCAAGTGAGAGTTGCAACAGCACAATTCCTGGTGTTGGAACATGCC
TCGAAGTATAGCAACTTCGTACCAATTACCTATGCCTGATAATGTACGCC
CATGAACGTCCCACATAATATGCCGAGTGCTTGCTTATCCACAACAAAGA
CAGCCCTCGTCCGCACAAGTCTCTTCGTTGACTCGTTTCAAATCGGTAGA
AGAGCCTGCCTCCCGTGTTTAAAGCCCTTTTGTACTACTCCTGCATTACC
CCCTGCATAGATAGATAAGGTCCCACACGGTGTGTCCCAACATATATTTG
GTGGGTCCTGATGCTGGCTAACAACTGAGATTTTCTTAGTGCGCGATAAA
AATAGATCGCGCATTCATGCATAAGAACATATGTCCGTCTTAAGATTTGA
ATCCTGGCTCTCCCAAACTTCGGATATATCCAATGTTTCTCTCTTTTCAA
ATTTCAAGAGATGAGCCACTCCAAACCAGGGAGGGATTTACCGTGTGGTC
ATTGAACCTGCAGACAATACCTGCTTAGTTTTGGTCAAGGTCTATCCTCA
ACGTGCGAACTTGATTTTGACAATTTCTATGTACTACCTGGTATCATACT
GTATTATCTACTGCACAATCCATGAATGATGGGGACCTGGGAAAAGCGGG
GCTACCGCGCTGACGAGTGTGCGTGCGTAGTGGACGGGTTGTGGCGCCCT
TTGCACAGACACTGCCAACATCACCGATTCAACACTTCTACCCCCTACTT
CGTTGCCCCTCTTCAGATCGCAACCCCCTCCTGGAGCAGATGAAACCCAT
GCCTCCGGCGACGTTTGTGAAAGGGGCCTCACTAGTAGCGAGAGAGGCAA
CGTTCGATCCTCTCAGGGGAGCGTTCGTTACCCTCGCTAGACCAAATGAT
CCCGAACTGAATCTGCCAGAACCGAGGAGAGGGCTGGGAGCCATGGGTCT
ATACAAGGATCCCGGTCTGGTCAAGGACGTAATGGTGAGAGAAAGGGGAC
GGCGTGACGGTCGAAGGAGGTCTGCTTGGTACCGCCATGCGTCAATGGAG
GAGCAGTCGGGTTGCACGATCGACGTATGGATGGGGGGTGTAAAAAGAAG
CCGTTTAGTGTTCGTGTTTGTGCACTTTGTCCTTCCTGCTGTGGGGTTGT
TCCCTTATTCTAAAACAGCAACGCCGCCTGTATACCATGAATAAGTTTTC
CGAAATACTCGATGAACTCAAACTCCCCTACCCGTGCCGTTGTCTACGTC
TTTTCAGTCTGAGGCAGGAGGAAGGCAACCGTTCAAGCTACCGAAGATGC
ATAAGCGAAGAGCTCCCCCGGGGACTCGCTTGACGAACGACCTTGGCACG
GTCATGCAGATGAACGAACTTACAGCTAACGAAAAGGCCGTTCTTTGGAG
CAACTACCAAAGGGCCATGGTGAGAGCGAGCGGTTCTGGTTGTGAGCGAA
ACCAAGCGGGGATATGGTGACAAACAACACACACACCGTTTCTTTGCTAC
TTTGGATGTTACCGCACCTGAACTTGTTGCAGCCAACCTAAATCTTGTCG
ATGTAATCGAGTGCCGTCACCAGCTTCCTCTCATCTCTCCGACTTGAAAG
AGTAGTCCCGTGAACGCTTTGTTTTTTTTGCCCTTCTTGTCCTGGAATCC
TGCATCTATCAGGAACGGTCCCTGCAGAAAGAAGGAGACCTAGAAAGTGT
GACGTGGAGGCACCGCGCGACTCACAAGCCAGCCCCCCCATGGGTCCACC
ACCGATGGCCCACCAAGCCAATCGCTCGCGCACCGCCGCCCTACGGCACC
GAGGATGTCCCTGAAAGCTTGTCGCCCGCTGCGGTTCTTCGGAGCGGCCG
GCGAGCGTGCAAAGGTTTCAACCAGGATCAAGGGGAACGTCTCCTGACAT
GGAAGGAGATGAAGGGAGACAGGATTGACCCGCCGCCCCAGCAGAAGGTG
AGGACACGGCATCTGGTGTAGGCTTGGGTCCCCCTTTTGGCTACGAACGT
TGAAATGTGTTTTTCTCACTGTTGCGTGCATCAGAGAGCTTAGGAACAGT
CTCATCCACTTGTCTAAGCCATCTGTTTGCATTCTCCATCACCACAACAA
CGATGACTGCCTATTCTCTTCCCTCCGCCACCAATCTCCATCCGACCCTG
AACTCTTGTTCGTTGACTGACGCAGCTGCCCCCCTCATACGAAGCCGATG
ACGCACACATGGACGCAATGATGGACGAAGAGCGGTCAACGCGGCTCGGC
GTGCCGATGCACAAGCAGCGCCGTCATGTTCCGGGGCACGTGGGCGAAAT
TTTAGGGGCCATCCGTCCTATCGGCGGTCGCGAAAGGAGAGAACTGCACG
CCCTGGAGATGCACGAGTTCACGGTTCCGAAGAAACCGACCCCCCCCCCT
GCCGCTGTGACTGGTAGAACGCCGTACCGACGGCCCAGCCAACACCAATT
CGATCGCCAGTAGTAGCGGTGGTGGGAAGTCGTCCCGACCTGGACTAATA
GATAGATTGCCTTGTGTCGCGGTGGTGTGTTGTACAAGACAGGTACCTGG
TTTAGAAAGGTGTCTTTTTCTGTGTATAGGATTGATTATTTAGCAGGAGT
GCCTAAACGTAGGGCCTGCCAAGATCATGGGGTGAAAAAAAGTTTGCACG
CGTTCGCGTGTGTGTACTGTGTACGAAAGAGGTGAGCAGTTCTGCCACTA
ATCATTTCACAGGGAAGTCCCTGTCTTTTACCAGGACGAACATTGCGCTC
GTGCGAAAGACCAGGAGTGAGGGCGGAGGAAGGAAATACAGTCAACGGTG
AGTGGGATTGTAGTTTCGTCAGATTCCTTTCTCGGAGTTGCCAGTCGCTC
TCGAATGCCAAGCTGTAAAATCTGTGCCAAGCCCACTCGACACCGACGAT
ATGGAGCACCCACGAGTAAGAGGGCGAGCGAGGCATTGCGGAGGACTTGT
CGGGGGTAGAGTATTTTTGTTACCACTAACAACGGCATCCAAGCCAAAGG
ATGATAAGCAGGAAGGCGTAGACAGACCTAACCCAACTTATGCCCACGGT
TTATGAGCCGAAGGTGCCTTGCACGCTATACAGAGTGTTACGTGTCGTGC
GAGTAAGACTGTATCCAACGATCTTTCTCTGCGTCTTGTTGCCATACAAA
GTGATGTCCGTCTCCCAAAGTTTGTGCTGTGTGTGCGTGTGTGCTTTTCC
TCTCATCTTTTGGCGCCAGTTGGCACGCATTTCGGTGTAGAAAATGAGCG
TCCCATCAGCCGGAGCCGCACAGAAGGTGTTGTCCTCTTTTCTTCGCAGG
GTTTTCATCCGTCGAGCCTCACGCGTAGTGTATCCTCCAGTCGTGCTCGT
TATAATTTCCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1283:7760..12072+

>mRNA_Ecto-sp13_S_contig1283.2334.1 ID=mRNA_Ecto-sp13_S_contig1283.2334.1|Name=mRNA_Ecto-sp13_S_contig1283.2334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1044bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1283:7760..12072+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAGAAAGGTGATACGACCACAGCCTCGAGCGGAACCACGGGCATC
CGTTGGCAAAAGACGAGATCACTCCAACGTGTGGAAGCCAAATCGCAACC
CCCTCCTGGAGCAGATGAAACCCATGCCTCCGGCGACGTTTGTGAAAGGG
GCCTCACTAGTAGCGAGAGAGGCAACGTTCGATCCTCTCAGGGGAGCGTT
CGTTACCCTCGCTAGACCAAATGATCCCGAACTGAATCTGCCAGAACCGA
GGAGAGGGCTGGGAGCCATGGGTCTATACAAGGATCCCGGTCTGGTCAAG
GACGTAATGTCTGAGGCAGGAGGAAGGCAACCGTTCAAGCTACCGAAGAT
GCATAAGCGAAGAGCTCCCCCGGGGACTCGCTTGACGAACGACCTTGGCA
CGGTCATGCAGATGAACGAACTTACAGCTAACGAAAAGGCCGTTCTTTGG
AGCAACTACCAAAGGGCCATGGAACGGTCCCTGCAGAAAGAAGGAGACCT
AGAAAGTGTGACGTGGAGGCACCGCGCGACTCACAAGCCAGCCCCCCCAT
GGGTCCACCACCGATGGCCCACCAAGCCAATCGCTCGCGCACCGCCGCCC
TACGGCACCGAGGATGTCCCTGAAAGCTTGTCGCCCGCTGCGGTTCTTCG
GAGCGGCCGGCGAGCGTGCAAAGGTTTCAACCAGGATCAAGGGGAACGTC
TCCTGACATGGAAGGAGATGAAGGGAGACAGGATTGACCCGCCGCCCCAG
CAGAAGCTGCCCCCCTCATACGAAGCCGATGACGCACACATGGACGCAAT
GATGGACGAAGAGCGGTCAACGCGGCTCGGCGTGCCGATGCACAAGCAGC
GCCGTCATGTTCCGGGGCACGTGGGCGAAATTTTAGGGGCCATCCGTCCT
ATCGGCGGTCGCGAAAGGAGAGAACTGCACGCCCTGGAGATGCACGAGTT
CACGGTTCCGAAGAAACCGACCCCCCCCCCTGCCGCTGTGACTGGTAGAA
CGCCGTACCGACGGCCCAGCCAACACCAATTCGATCGCCAGTAG
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