prot_Ecto-sp13_S_contig12824.2332.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12824.2332.1
Unique Nameprot_Ecto-sp13_S_contig12824.2332.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length64
Homology
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: D7FLZ5_ECTSI (40S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLZ5_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 8.990e-38
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV
Sbjct:    9 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 72          
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A835ZEV0_9STRA (40S ribosomal protein S4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.420e-30
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            +KRLNAPKHWLLGK+EGIWAPKPS GPH  RECLPL+II+RNRLKYALT +EANMICMQK +KV
Sbjct:    8 LKRLNAPKHWLLGKLEGIWAPKPSCGPHNGRECLPLIIIVRNRLKYALTKAEANMICMQKHVKV 71          
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A067CQF7_SAPPC (40S ribosomal protein S4 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQF7_SAPPC)

HSP 1 Score: 109 bits (272), Expect = 7.090e-28
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            +KR++APKHW+LGK++GIWAP+PS GPH  RECLPL+IIIRNRLKYALT  E  MICMQKL+KV
Sbjct:    9 LKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIIIRNRLKYALTKQEVTMICMQKLVKV 72          
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A024GAC6_9STRA (S4 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GAC6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.340e-28
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            +KRL+APKHW+LGK++G+WAP+PS GPH  RECLPL+II+RNRLKYALT  E  MICMQK IKV
Sbjct:    9 LKRLSAPKHWMLGKLDGVWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKAIKV 72          
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A196SFV9_BLAHN (40S ribosomal protein S4 n=3 Tax=Blastocystis sp. subtypes TaxID=944171 RepID=A0A196SFV9_BLAHN)

HSP 1 Score: 108 bits (269), Expect = 1.820e-27
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            MKRLNAPKHW+L KM G+WAPKPS GPH  RECLPL++IIRNRLKYALT  E  MICMQ+L+KV
Sbjct:    9 MKRLNAPKHWMLNKMGGVWAPKPSCGPHKQRECLPLLLIIRNRLKYALTNHEVKMICMQRLVKV 72          
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: M4BHJ4_HYAAE (40S ribosomal protein S4 n=21 Tax=Peronosporaceae TaxID=4777 RepID=M4BHJ4_HYAAE)

HSP 1 Score: 107 bits (266), Expect = 5.330e-27
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            +KRL+APKHW+LGK++GIWAP+PS GPH  RECLPL+II+RNRLKYALT  E  MICMQK +KV
Sbjct:    9 LKRLSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKSVKV 72          
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: F0WD75_9STRA (40S ribosomal protein S4 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WD75_9STRA)

HSP 1 Score: 107 bits (266), Expect = 5.330e-27
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            +KRL+APKHW+LGK++G+WAP+PS GPH  RECLPL+II+RNRLKYALT  E  MICMQK +KV
Sbjct:    9 LKRLSAPKHWMLGKLDGVWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKAVKV 72          
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A482RHH1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RHH1_9ARCH)

HSP 1 Score: 101 bits (252), Expect = 8.510e-27
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            +KRLNAPKHW+L KM GI+APKP+ GPH +RECLPL II+RNRLKYALT  E+ MICM++L+KV
Sbjct:    9 LKRLNAPKHWMLAKMGGIFAPKPAAGPHKSRECLPLSIILRNRLKYALTRKESMMICMERLVKV 72          
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A7S2WPT4_9STRA (40S ribosomal protein S4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPT4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.490e-26
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            +KRLNAPK W+LGKMEGIWAP+PS GPH  RECLPL++I+RNRLKYALT+ E   ICMQ+L+K+
Sbjct:   25 LKRLNAPKAWMLGKMEGIWAPRPSAGPHKLRECLPLILILRNRLKYALTLQEVKAICMQRLVKI 88          
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A1W0A721_9STRA (40S ribosomal protein S4 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A721_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.380e-26
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = 0
Query:    1 MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 64
            +KR++APKHW+LGK++GIWAP+PS GPH  RECLPL+IIIRNRLKYALT  E  MICMQKL+KV
Sbjct:  375 LKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIIIRNRLKYALTKQEVTMICMQKLVKV 438          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ5_ECTSI8.990e-38100.0040S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZEV0_9STRA1.420e-3082.8140S ribosomal protein S4 n=2 Tax=Tribonema minus T... [more]
A0A067CQF7_SAPPC7.090e-2875.0040S ribosomal protein S4 n=3 Tax=Saprolegniaceae T... [more]
A0A024GAC6_9STRA9.340e-2873.44S4 domain-containing protein n=1 Tax=Albugo candid... [more]
A0A196SFV9_BLAHN1.820e-2776.5640S ribosomal protein S4 n=3 Tax=Blastocystis sp. ... [more]
M4BHJ4_HYAAE5.330e-2773.4440S ribosomal protein S4 n=21 Tax=Peronosporaceae ... [more]
F0WD75_9STRA5.330e-2771.8840S ribosomal protein S4 n=1 Tax=Albugo laibachii ... [more]
A0A482RHH1_9ARCH8.510e-2771.88Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2WPT4_9STRA1.490e-2671.8840S ribosomal protein S4 n=1 Tax=Rhizochromulina m... [more]
A0A1W0A721_9STRA2.380e-2675.0040S ribosomal protein S4 (Fragment) n=1 Tax=Thraus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013843Ribosomal protein S4e, N-terminalPFAMPF08071RS4NTcoord: 1..28
e-value: 1.4E-15
score: 57.0
NoneNo IPR availableGENE3D3.10.290.40coord: 1..64
e-value: 8.7E-27
score: 95.4
NoneNo IPR availablePANTHERPTHR11581:SF040S RIBOSOMAL PROTEIN S4-RELATEDcoord: 1..64
IPR000876Ribosomal protein S4ePANTHERPTHR1158130S/40S RIBOSOMAL PROTEIN S4coord: 1..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12824contigEcto-sp13_S_contig12824:4214..4909 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12824.2332.1mRNA_Ecto-sp13_S_contig12824.2332.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12824 4196..4909 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12824.2332.1 ID=prot_Ecto-sp13_S_contig12824.2332.1|Name=mRNA_Ecto-sp13_S_contig12824.2332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTM
SEANMICMQKLIKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013843Ribosomal_S4e_N
IPR000876Ribosomal_S4e