mRNA_Ecto-sp13_S_contig12824.2332.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12824.2332.1
Unique NamemRNA_Ecto-sp13_S_contig12824.2332.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: D7FLZ5_ECTSI (40S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLZ5_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 3.530e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV
Sbjct:    3 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 72
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A835ZEV0_9STRA (40S ribosomal protein S4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.870e-35
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RGPKKH+KRLNAPKHWLLGK+EGIWAPKPS GPH  RECLPL+II+RNRLKYALT +EANMICMQK +KV
Sbjct:    2 RGPKKHLKRLNAPKHWLLGKLEGIWAPKPSCGPHNGRECLPLIIIVRNRLKYALTKAEANMICMQKHVKV 71
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A196SFV9_BLAHN (40S ribosomal protein S4 n=3 Tax=Blastocystis sp. subtypes TaxID=944171 RepID=A0A196SFV9_BLAHN)

HSP 1 Score: 119 bits (299), Expect = 7.700e-32
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RGPKKHMKRLNAPKHW+L KM G+WAPKPS GPH  RECLPL++IIRNRLKYALT  E  MICMQ+L+KV
Sbjct:    3 RGPKKHMKRLNAPKHWMLNKMGGVWAPKPSCGPHKQRECLPLLLIIRNRLKYALTNHEVKMICMQRLVKV 72
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A024GAC6_9STRA (S4 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GAC6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.010e-31
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RGP+KH+KRL+APKHW+LGK++G+WAP+PS GPH  RECLPL+II+RNRLKYALT  E  MICMQK IKV
Sbjct:    3 RGPRKHLKRLSAPKHWMLGKLDGVWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKAIKV 72
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: M4BHJ4_HYAAE (40S ribosomal protein S4 n=21 Tax=Peronosporaceae TaxID=4777 RepID=M4BHJ4_HYAAE)

HSP 1 Score: 117 bits (293), Expect = 6.370e-31
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RGP+KH+KRL+APKHW+LGK++GIWAP+PS GPH  RECLPL+II+RNRLKYALT  E  MICMQK +KV
Sbjct:    3 RGPRKHLKRLSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKSVKV 72
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: F0WD75_9STRA (40S ribosomal protein S4 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WD75_9STRA)

HSP 1 Score: 117 bits (293), Expect = 6.370e-31
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RGP+KH+KRL+APKHW+LGK++G+WAP+PS GPH  RECLPL+II+RNRLKYALT  E  MICMQK +KV
Sbjct:    3 RGPRKHLKRLSAPKHWMLGKLDGVWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKAVKV 72
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A067CQF7_SAPPC (40S ribosomal protein S4 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQF7_SAPPC)

HSP 1 Score: 117 bits (293), Expect = 6.670e-31
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RGP+ H+KR++APKHW+LGK++GIWAP+PS GPH  RECLPL+IIIRNRLKYALT  E  MICMQKL+KV
Sbjct:    3 RGPRHHLKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIIIRNRLKYALTKQEVTMICMQKLVKV 72
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A7S2WPT4_9STRA (40S ribosomal protein S4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPT4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.840e-30
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RGP+KH+KRLNAPK W+LGKMEGIWAP+PS GPH  RECLPL++I+RNRLKYALT+ E   ICMQ+L+K+
Sbjct:   19 RGPRKHLKRLNAPKAWMLGKMEGIWAPRPSAGPHKLRECLPLILILRNRLKYALTLQEVKAICMQRLVKI 88
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A482RHH1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RHH1_9ARCH)

HSP 1 Score: 110 bits (274), Expect = 4.840e-30
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RG KKH+KRLNAPKHW+L KM GI+APKP+ GPH +RECLPL II+RNRLKYALT  E+ MICM++L+KV
Sbjct:    3 RGQKKHLKRLNAPKHWMLAKMGGIFAPKPAAGPHKSRECLPLSIILRNRLKYALTRKESMMICMERLVKV 72
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BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Match: A0A2D4CA31_PYTIN (40S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4CA31_PYTIN)

HSP 1 Score: 115 bits (287), Expect = 5.260e-30
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKV 210
            RGP+KH+KR++APKHW+LGK++GIWAP+PS GPH  RECLPLVII+RNRLKYALT  E   ICM KL+KV
Sbjct:    3 RGPRKHLKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLVIILRNRLKYALTKKEVTAICMNKLVKV 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12824.2332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ5_ECTSI3.530e-42100.0040S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZEV0_9STRA5.870e-3584.2940S ribosomal protein S4 n=2 Tax=Tribonema minus T... [more]
A0A196SFV9_BLAHN7.700e-3278.5740S ribosomal protein S4 n=3 Tax=Blastocystis sp. ... [more]
A0A024GAC6_9STRA1.010e-3174.29S4 domain-containing protein n=1 Tax=Albugo candid... [more]
M4BHJ4_HYAAE6.370e-3174.2940S ribosomal protein S4 n=21 Tax=Peronosporaceae ... [more]
F0WD75_9STRA6.370e-3172.8640S ribosomal protein S4 n=1 Tax=Albugo laibachii ... [more]
A0A067CQF7_SAPPC6.670e-3174.2940S ribosomal protein S4 n=3 Tax=Saprolegniaceae T... [more]
A0A7S2WPT4_9STRA1.840e-3072.8640S ribosomal protein S4 n=1 Tax=Rhizochromulina m... [more]
A0A482RHH1_9ARCH4.840e-3072.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2D4CA31_PYTIN5.260e-3072.8640S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12824contigEcto-sp13_S_contig12824:4196..4909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score136.0
Seed ortholog evalue6.3e-30
Seed eggNOG ortholog2880.D7FLZ5
Preferred nameRPS4X
Model size210
KEGG koko:K02987,ko:K22377
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000822,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005856,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009636,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022626,GO:0022627,GO:0030029,GO:0030036,GO:0030684,GO:0030686,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035770,GO:0036094,GO:0036464,GO:0042127,GO:0042221,GO:0042493,GO:0042886,GO:0043009,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0045727,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0060255,GO:0060322,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904,GO:2000112
Exons2
EggNOG free text desc.rRNA binding
EggNOG OGsCOG1471@1,KOG0378@2759
Ec32 ortholog description40S ribosomal protein S4
Ec32 orthologEc-22_000290.1
EC2.3.2.27
Cds size192
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462686.2954192-UTR-Ecto-sp13_S_contig12824:4195..42131681462686.2954192-UTR-Ecto-sp13_S_contig12824:4195..4213Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12824 4196..4213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462686.306632-CDS-Ecto-sp13_S_contig12824:4213..42791681462686.306632-CDS-Ecto-sp13_S_contig12824:4213..4279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12824 4214..4279 +
1681462686.3169246-CDS-Ecto-sp13_S_contig12824:4783..49091681462686.3169246-CDS-Ecto-sp13_S_contig12824:4783..4909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12824 4784..4909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12824.2332.1prot_Ecto-sp13_S_contig12824.2332.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12824 4214..4909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12824.2332.1

>prot_Ecto-sp13_S_contig12824.2332.1 ID=prot_Ecto-sp13_S_contig12824.2332.1|Name=mRNA_Ecto-sp13_S_contig12824.2332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTM
SEANMICMQKLIKV
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mRNA from alignment at Ecto-sp13_S_contig12824:4196..4909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12824.2332.1 ID=mRNA_Ecto-sp13_S_contig12824.2332.1|Name=mRNA_Ecto-sp13_S_contig12824.2332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12824:4196..4909+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGCCCCAAGAAGCACATGAAGCGTCTGAACGCGCCGAAGCACTGGTT
GCTGGGCAAAATGGAGGGCATCTGGGCCCCCAAGGTGCGATTACTGCTGC
TGTTGCCAGCACTCGTGATGCATGAAAAACGCGGTGGCTTTCAATTCCCA
CGACTGCTTTTCACACAAGCCGGACCGTCTATTCGGGCCGCTGACTAGGC
TATTGGTTTGATTTCGCCTTCTCTAGGCTGCGCCTCATGTAACATGCGTG
TGTCGCGAAGCAGCAAGTTCCCTTCCGGAGTTGAAATCTATCATCTGGGG
GACGGTTTTTTGCCTGTGATTCATTCACGAAGTGTTATATTCTTGGGGGG
ATTTGGAAGCTCTCATTAACAGTCTGGTCGACGAAACCGGAATTTTTTGT
TGATCAGCGTAGACGATCAACAGCAACGGATCTTGTTACCTGAGTTCTTC
GCAAAAGATTGAGGACGACGTATAACAGGAGCCGCGAGAAAATTATGGAA
ACTTTTTTGCACCGTCCCGAGAGAGACGATTGGTCGAAGATGGCGAACAA
CTCAGGCCGAATCCCCCCTCCCCCCCCCATTCCCGCAGCCCTCCCCGGGA
CCCCACCTCAACCGGGAGTGCTTGCCGCTGGTGATCATCATCCGCAACCG
GCTCAAGTACGCCCTCACCATGTCGGAGGCGAACATGATCTGCATGCAGA
AGCTCATTAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12824:4196..4909+

>mRNA_Ecto-sp13_S_contig12824.2332.1 ID=mRNA_Ecto-sp13_S_contig12824.2332.1|Name=mRNA_Ecto-sp13_S_contig12824.2332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12824:4196..4909+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCGTCTGAACGCGCCGAAGCACTGGTTGCTGGGCAAAATGGAGGG
CATCTGGGCCCCCAAGCCCTCCCCGGGACCCCACCTCAACCGGGAGTGCT
TGCCGCTGGTGATCATCATCCGCAACCGGCTCAAGTACGCCCTCACCATG
TCGGAGGCGAACATGATCTGCATGCAGAAGCTCATTAAGGTG
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