mRNA_Ecto-sp13_S_contig12823.2331.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12823.2331.1
Unique NamemRNA_Ecto-sp13_S_contig12823.2331.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12823.2331.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 1.250e-105
Identity = 163/173 (94.22%), Postives = 171/173 (98.84%), Query Frame = 1 
Query:    1 VTADALTLGLMVWASVLDPDMDQDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRRKASKLWRGERTPREEKSDIKGSWGEACGIFCVLVRENFIGCVKESMHGPRQKPRSSFTLAVSDRLPGIKEEEQRDPEAAEGIIGRRPVRTSKFPIVKHGRGGSGDVETG 519
            VTADALTLG+MVWASVLDPDMD DKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIV+FFQIR KASKLWRGERTPRE+KSDIKGSWGE+CGIFCVLVRENFIGCVKES+HGPR+KPRSSFTLAVSDRLPGIKEEE+RDPEAAEGIIGR+PVRTSKFPIVKHGRGGSGDVETG
Sbjct: 1335 VTADALTLGMMVWASVLDPDMDADKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVIFFQIRHKASKLWRGERTPREQKSDIKGSWGESCGIFCVLVRENFIGCVKESVHGPRRKPRSSFTLAVSDRLPGIKEEEKRDPEAAEGIIGRKPVRTSKFPIVKHGRGGSGDVETG 1507
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BLAST of mRNA_Ecto-sp13_S_contig12823.2331.1 vs. uniprot
Match: A0A6H5JTC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 2.560e-104
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = 1 
Query:    1 VTADALTLGLMVWASVLDPDMDQDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRRKASKLWRGERTPREEKSDIKGSWGEACGIFCVLVRENFIGCVKESMHGPRQKPRSSFTLAVSDRLPGIKEEEQRDPEAAEGIIGRRPVRTSKFPIVKHGR-GGSGDVETG 519
            VTADALTL LMVWAS LDPD D DKRKLD IYAGCML+QTLGI LLTIPIYADTF+VLF QIR+KASKLWRGERTPR EKSDIKGSWGEACGIFCVLVRENFIGCVKES+ GPR+KPRSSFTLAVSDRLPGIKEEE RDPEAAEGIIGR+PVRTSKFPIVKHGR GGSGD+ETG
Sbjct:  161 VTADALTLALMVWASALDPDEDGDKRKLDNIYAGCMLVQTLGIILLTIPIYADTFVVLFSQIRQKASKLWRGERTPRAEKSDIKGSWGEACGIFCVLVRENFIGCVKESVQGPRRKPRSSFTLAVSDRLPGIKEEENRDPEAAEGIIGRKPVRTSKFPIVKHGRAGGSGDLETG 334
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BLAST of mRNA_Ecto-sp13_S_contig12823.2331.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.210e-28
Identity = 69/159 (43.40%), Postives = 91/159 (57.23%), Query Frame = 1 
Query:    1 VTADALTLGLMVWASVLDPDMDQDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRRKASKLWRGERTPREEKSDIKGSWGEACGIFCVLVRENFIGCVKESMHGPRQKP--------RSSFTLAVSDRLPGIKEEEQRDPEAAEGIIGRRP 453
            V ADA+TLGLM +A+ L+PD D D  +L+ +YAG +L+QTL I    IP+Y D FI +   + +K S+L +G  T  + K+ IKGS  E   IFC LVRENF+GCVK +  GP   P        RSS  L      P  +E +  D E A    G+RP
Sbjct:  878 VLADAITLGLMFYATFLEPDDDDDADRLELVYAGALLVQTLAILFFVIPLYLDAFITIVGTLCKKCSQLAKG--TTSKFKAPIKGSSSETASIFCALVRENFVGCVKSTWRGPTYNPVQTELQRRRSSLLL------PEFQEGQSSDEETANPHFGKRP 1028
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12823.2331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIK9_ECTSI1.250e-10594.22Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
A0A6H5JTC8_9PHAE2.560e-10489.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3P1_ECTSI1.210e-2843.40Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12823contigEcto-sp13_S_contig12823:123..3183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score324.7
Seed ortholog evalue2.5e-86
Seed eggNOG ortholog2880.D8LIK9
Model size522
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
Ec32 ortholog descriptionTRP-like family
Ec32 orthologEc-18_003210.1
Cds size492
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12823.2331.1prot_Ecto-sp13_S_contig12823.2331.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12823 153..3183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462686.2139683-UTR-Ecto-sp13_S_contig12823:122..1521681462686.2139683-UTR-Ecto-sp13_S_contig12823:122..152Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12823 123..152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462686.2238607-CDS-Ecto-sp13_S_contig12823:152..2391681462686.2238607-CDS-Ecto-sp13_S_contig12823:152..239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12823 153..239 +
1681462686.2320561-CDS-Ecto-sp13_S_contig12823:652..7391681462686.2320561-CDS-Ecto-sp13_S_contig12823:652..739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12823 653..739 +
1681462686.2400994-CDS-Ecto-sp13_S_contig12823:1530..15631681462686.2400994-CDS-Ecto-sp13_S_contig12823:1530..1563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12823 1531..1563 +
1681462686.2482007-CDS-Ecto-sp13_S_contig12823:2067..21401681462686.2482007-CDS-Ecto-sp13_S_contig12823:2067..2140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12823 2068..2140 +
1681462686.2568867-CDS-Ecto-sp13_S_contig12823:2745..28261681462686.2568867-CDS-Ecto-sp13_S_contig12823:2745..2826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12823 2746..2826 +
1681462686.270802-CDS-Ecto-sp13_S_contig12823:3052..31831681462686.270802-CDS-Ecto-sp13_S_contig12823:3052..3183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12823 3053..3183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12823.2331.1

>prot_Ecto-sp13_S_contig12823.2331.1 ID=prot_Ecto-sp13_S_contig12823.2331.1|Name=mRNA_Ecto-sp13_S_contig12823.2331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MVWASVLDPDMDQDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFF
QIRRKASKLWRGERTPREEKSDIKGSWGEACGIFCVLVRENFIGCVKESM
HGPRQKPRSSFTLAVSDRLPGIKEEEQRDPEAAEGIIGRRPVRTSKFPIV
KHGRGGSGDVETG*
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mRNA from alignment at Ecto-sp13_S_contig12823:123..3183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12823.2331.1 ID=mRNA_Ecto-sp13_S_contig12823.2331.1|Name=mRNA_Ecto-sp13_S_contig12823.2331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3061bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12823:123..3183+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACCGCCGATGCGTTAACCCTAGGACTGATGGTGTGGGCGTCCGTCCT
CGATCCGGACATGGATCAGGACAAGAGGAAGCTTGACGGCATCTACGCTG
GCTGCATGCTCATACAGGTGCCTTTCGGCGGCCGCGTATTTTGGCGAGAA
TCATCTTGTCTTCTCTCGTTCATGTTGTTGGCAATGCGAGTATTGTTGCT
TCTCAAACCAACACCCCGTGGCCGGTTTGAGTAGAACCACCAGCGCGATC
GCAGCCCGGAAAAAAAAGAGAGTAAAAAAGAGTGAAATCGTGGGCTTGGT
ACACGCGCTGTGTGGAGCTATGTCGATTTGGTTGTTTTCGATATTATGCT
TGCTCCTGAATTTTTCTTTTTTTCCAGCCCGCACTAACCATTGACATCGA
CGTACGACAACAGCAGGAGCGGGAATGTCAAACACTATTATCGTAACAAT
ACCAACGGCAACATCAATGCTGTCGTCCCCACGCGTTTTTTACGACCCTT
TTCTGCTGCTGCTGCTGCTGCACACAACAGACACTGGGGATCTTCTTGCT
GACCATCCCCATTTACGCGGACACCTTCATCGTCCTCTTCTTCCAGATCC
GCAGGAAGGCCTCCAAGGTACGTGCAGAGATTTACGGAAATGTACGAAAG
TCCACCGAGACCCACGGACGGAGTAATTGTACAATAGAACGTCAGCTTTT
TTTCCCTCAAGACTCGGTGGTTTATAAATTTCACACGCCCCCGCTTGGCC
ATCTTCGCTTGGCCTTAGTGGGGGCGGTCCTCTTCTTCCGGATCCGCAAG
AAGGCCTACAAGGTACGTACAGAGATTTACGGAATGTACGAAAGTCCACC
GAGACACACGGAAGCGCAAGAAGGCCTACAAGGTACGTACAGAGATTTAC
GGAATGTACGAAAGTCCACCGAGACACACGGAAGGAGTAAGTGTACAATG
TAACGTCAGCTTTGTTTCCCTCAAGACTCGGTGGTTTGCAAATTTCACAC
GCCGCCGCCTGGCCATCTTCGTGTGGCCTTAGTGGGGGCGAGTGCGTGGG
TGTAGCCCTAGACGTGACCACGGAAGGCGTCCGCGTTAGATGGACCGTTA
CGGATATGATAAGGTACTGAGCAGAGAATGGAACGGGTTTCATGGAGTGA
AATGTCCCATCTTAGTTTGACGACGTTGTATTTCTGTTGGCGTTGATTAG
TCAGCATGCTTCGTATGAAAATTTAGTGCAAACACATGTATTTCGGTGGT
TTTCGAAACCACCGAAACAAGATTGGGAGAGGTATTTTTAACAAAAAAAA
TGGAAGGAGGTGCGATTTTTTTCCCTGTCGCTTGGTCCGAACTCACGTTT
TTACCCCCGTCCCCTTCTCTTTGGCGAAATCTGTCCTCGCTATGGTCTGT
CGGAGCAGCTCTGGCGCGGGGAACGTACCCCAAGAGAAGAGGTGAGTTCT
TTTTTTTTTTGGTTATGGCCGGTACACAACTCACATCCCCTCTCAGATGG
CGTGACCTTGGTAGATGTTCGTCGGAGATGTAGCGGTCGCGGTGTTCCCT
CCCTCCCACGGATCGATCAAGATCCGAAGAGCCCAGTGCGCACTTCCGTT
TATCCGTACTCTAAACAAGTTTAGTAGCACTAGTAGGTGGCGTCAGGTCC
ACTGTGATATAGCGTGCACGCAAGGGACACGGTGACCCTAAACGCTCGTT
CCTTCTTCACGTGGGCCCCCGTTTATCACGAGAGGTTGAGCCGTCTTTGT
CTGTGCTTACTAATACGGTCGGTATTCGTAGTTGGCGCTGCAAGAGATTC
CTGTTTGTAGAACGAGGGAGCTGAATCAAACCGGCCTCTGCCGCCGTTTG
GTGCGAACTTTCTGTTGAGAGCCAGAAAGACTGTAGATACCAACCCCGTG
GCGAACTTCGGCGCGCTGTATGAATTTATTCTACCGGCGAAACAGAAAAG
CGATATCAAGGGAAGCTGGGGCGAGGCCTGCGGCATCTTCTGCGTCCTAG
TGAGGGAGAACTTCATTGGTGAGGGGAGATGAGAAAGTTTTGTTCTTGCG
TTTTGTTTTCTGCGCCCCGCTGCTGGCTTGCCTGGTCTTGGCCGTTTCAC
TGCGGTTGCGCACTGCCCGATACCTGGCGGAACCGCAGGTCGGGTCGAAG
AACCTTAGCAGGGGGGGGGTCCTTCTCTCGTGTGTAACCCGATTTAGTAC
CGTGAAGATTGAAAGAGGAGCGCTATGGACATGGCGAGAGAGATGCGTAC
ATTTTTTTTTTTTTCTTTCGTTCGTCCTTGGCCAAAGGCTGCGTTGAACA
CGCAATTGAGACTTTGGTGAAGGGGGCGGGGGGAACTCTCATAGCCTTCC
CCCCTCGAGGCGCTGCTGCTCTGCTCTCAGTCTCGAGAGAATGGATTCGT
GGTCAATGTCCTCATGGCAAGGCAGGGAAACGGTACATGCACACATCCCC
GTCCGATGTTGTGCACGGCCATGGCGACGGCACATACCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCTCCCCCTCCTCCCCCATTCCCACCCGCCCACCCCACTCCGC
CGTCCTTGCGCTGGTGATTACAGGCTGTGTGAAGGAGTCTATGCACGGCC
CGAGGCAAAAACCGCGGTCGTCGTTTACGCTGGCCGTTTCGGACCGCCTG
CCCGGTGAGTGGATAACACACTGGCGGTGTAATAAATAAGTGATAAAGAG
GAATGTCGTTGGTTGCATTTTTTTTTTTTTTTTGGTGGTGGTGGTCGCGG
TTGTGGGATTTTGGCAATTAATTGCTGTGTCGATGTTTCCCGTCTCTCCT
TTCTTCTACGGAGCCCCTGTCGAAGCCCCTCGTCCTGTTGTCCCCCTCAC
CCCCCCTACCCTTGCTTTGTCCGATACCAGGCATAAAGGAAGAGGAGCAA
CGAGACCCCGAAGCTGCGGAGGGAATCATCGGGAGAAGACCGGTCCGGAC
GAGCAAGTTTCCAATCGTCAAGCACGGCCGTGGAGGGAGCGGCGACGTGG
AGACGGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12823:123..3183+

>mRNA_Ecto-sp13_S_contig12823.2331.1 ID=mRNA_Ecto-sp13_S_contig12823.2331.1|Name=mRNA_Ecto-sp13_S_contig12823.2331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12823:123..3183+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTGGGCGTCCGTCCTCGATCCGGACATGGATCAGGACAAGAGGAA
GCTTGACGGCATCTACGCTGGCTGCATGCTCATACAGACACTGGGGATCT
TCTTGCTGACCATCCCCATTTACGCGGACACCTTCATCGTCCTCTTCTTC
CAGATCCGCAGGAAGGCCTCCAAGCTCTGGCGCGGGGAACGTACCCCAAG
AGAAGAGAAAAGCGATATCAAGGGAAGCTGGGGCGAGGCCTGCGGCATCT
TCTGCGTCCTAGTGAGGGAGAACTTCATTGGCTGTGTGAAGGAGTCTATG
CACGGCCCGAGGCAAAAACCGCGGTCGTCGTTTACGCTGGCCGTTTCGGA
CCGCCTGCCCGGCATAAAGGAAGAGGAGCAACGAGACCCCGAAGCTGCGG
AGGGAATCATCGGGAGAAGACCGGTCCGGACGAGCAAGTTTCCAATCGTC
AAGCACGGCCGTGGAGGGAGCGGCGACGTGGAGACGGGGTGA
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