mRNA_Ecto-sp13_S_contig12815.2327.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12815.2327.1
Unique NamemRNA_Ecto-sp13_S_contig12815.2327.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12815.2327.1 vs. uniprot
Match: A0A6H5K4Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Q3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.540e-10
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 TPASDRRGGKRSTSQDRGSRNQRARVADSQENDIDPIEEAVSIVEVPN 144
            TPA DRRGGKRS SQ RGSRNQ ARVADS+ENDIDPIEEAVSI E  N
Sbjct:   55 TPAYDRRGGKRSKSQGRGSRNQTARVADSRENDIDPIEEAVSIAEDTN 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12815.2327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4Q3_9PHAE3.540e-1083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12815contigEcto-sp13_S_contig12815:813..3707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1398
Hectar predicted targeting categoryother localisation
Exons5
Cds size753
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12815.2327.1prot_Ecto-sp13_S_contig12815.2327.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12815 2166..3707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.8167799-UTR-Ecto-sp13_S_contig12815:812..10141681462685.8167799-UTR-Ecto-sp13_S_contig12815:812..1014Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12815 813..1014 -
1681462685.8277671-UTR-Ecto-sp13_S_contig12815:1386..15241681462685.8277671-UTR-Ecto-sp13_S_contig12815:1386..1524Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12815 1387..1524 -
1681462685.8424766-UTR-Ecto-sp13_S_contig12815:1861..21651681462685.8424766-UTR-Ecto-sp13_S_contig12815:1861..2165Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12815 1862..2165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.852764-CDS-Ecto-sp13_S_contig12815:2165..26411681462685.852764-CDS-Ecto-sp13_S_contig12815:2165..2641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12815 2166..2641 -
1681462685.8638065-CDS-Ecto-sp13_S_contig12815:2867..30091681462685.8638065-CDS-Ecto-sp13_S_contig12815:2867..3009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12815 2868..3009 -
1681462685.8727653-CDS-Ecto-sp13_S_contig12815:3572..37071681462685.8727653-CDS-Ecto-sp13_S_contig12815:3572..3707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12815 3573..3707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12815.2327.1

>prot_Ecto-sp13_S_contig12815.2327.1 ID=prot_Ecto-sp13_S_contig12815.2327.1|Name=mRNA_Ecto-sp13_S_contig12815.2327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
TPASDRRGGKRSTSQDRGSRNQRARVADSQENDIDPIEEAVSIVEVPNNQ
RLAANIPQVAHAVGESIVRQGWTPALSCAVACEMLMRAGCPGSLRRIQPQ
SEGPTESSHAKPPPLAASCISFCFWPATSEPRRTGRRWYSVRAPPSSRGA
TSCTSTPGDRRTSRSSPERALERGVHLLCQLLFGTRCQLQQFCISTARAT
VFPTTTTEVICAPVVLRLDVARGHLPVHLPIAVRFLDQTRVTHTSLAFIW
*
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mRNA from alignment at Ecto-sp13_S_contig12815:813..3707-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12815.2327.1 ID=mRNA_Ecto-sp13_S_contig12815.2327.1|Name=mRNA_Ecto-sp13_S_contig12815.2327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2895bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12815:813..3707- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCCGCCTCCGACCGCCGCGGTGGAAAGCGTTCGACGTCTCAAGACCG
AGGCTCCCGCAACCAGAGGGCGCGCGTCGCCGACTCCCAAGAGAATGACA
TCGACCCCATCGAAGAGGCAGTGAGCATCGTCGAGGTGTGTTGTCCGGAT
TCCACGGATTGTCGTCGGGCGTTTGCGTAGCACCCAGCAATCCTTTTGAC
TTTCAATTCAAAATTTACCTCCCGATTTTCTCATGTTGGGCTTGGTGCTT
GCGACTCAAGGCTACGATGAATTGTGAGACGCCCTAGCATGCTCCGTTTG
GTCGTCGCCAAGCAGAGGCGTCTGAAGGCTGGGTTTGCCCGAAGATAACT
CTCTTTGTCTTCCTTCTCAGCCGTTTGTTTCCATCCCTTTGTATTTCAAA
ATCCCATGCGAATCTTCTTGGCTCGTGTCGATCCAATTGTTAACGCTGAA
GTGATGTAATGAGCACACACTCGTGCCACCACCAGGGGTTCATAGCGTAC
TCGACATTCGTTTTTTTCTTGAGCATCACTCTGTTTTGGTGGACGCAAAG
CAGAACTTCATATTCGAGAGACCATGCTTCCGGCCGTTAGGTCTCCCTCT
CTCCGTTTTTAAAGAGCCCCCGTTGTTCACTCGAATCCATAGCTTCAAAC
CTAACCCCAATCTTGTACCTTCCCTCACATGATGGCTGTCTTCCACAGGT
TCCCAACAACCAGCGTCTAGCCGCCAACATCCCCCAGGTGGCGCACGCCG
TCGGGGAAAGTATAGTCCGTCAGGGCTGGACACCCGCGCTTTCGTGTGCC
GTTGCCTGTGAAATGCTCATGCGGGCGGGTTGCCCCGGGAGTACAAAACC
TAGAGAACGTCTACTTGCTCTCACTCTTGGAAGAACGGTATTTTATTCGT
GTTCTTTCTTCAGCTAACACGAAGGGCGGTGGGAGTTCTCGTGTTGTATT
TCGGTACCCAACCTTCTACACTTTTGCCGCCGTAAAATCCCCTGGAGCAT
GCTCTTAACCCGTTCGCTTGCCGTGCGCCTCTCAACGTGCCTTTTCTTTC
CCTTGCCACCGGGCAGGTCTCCGTCGGATACAGCCCCAGTCTGAGGGGCC
AACGGAAAGCTCTCATGCGAAACCACCGCCGTTAGCAGCATCTTGCATCA
GTTTCTGCTTTTGGCCGGCAACTTCAGAACCGAGACGAACTGGGCGCAGG
TGGTATTCCGTGAGAGCACCCCCGTCCTCAAGGGGGGCTACCTCATGTAC
AAGCACGCCAGGGGATCGAAGAACTTCAAGGAGTTCGCCTGAGAGAGCCC
TTGAACGAGGTGTTCACCTCCTTTGCCAGCTTTTGTTCGGTACCCGGTGC
CAGTTACAACAGTTCTGTATTTCTACGGCAAGGGCCACAGTTTTTCCAAC
CACAACCACTGAAGTAATTTGCGCCCCGGTTGTGTTGCGATTGGATGTTG
CCCGAGGCCACCTACCAGTCCACCTCCCCATCGCGGTTCGCTTTTTGGAT
CAGACGCGGGTAACACACACATCCCTCGCCTTCATCTGGTAGACGCATGC
TGCAGCTTCGCTCGGAATGTTATACGAACCTGACCCTCACCGCAACAACT
CTTGGAGACTATGCCGTACCCTCGGCTATCCACTGCATACCTTCCCCCCC
TCTTTTTGCTCGTGTGGAAGCGGCGATCCACAAGAACCTCAAGTCGGCGC
ACAGGGGAGAGCGTGACGTCTGCGTGAACCTTGTCCGCAATGTCACAAAA
GCTATATACAAAGACAACAGCAACGGCCGCCGCAATCCCGCGCTGGTGGA
AAGCTGCGCAATCGTCAAGACCGTGCGCAAGCAACTACGCGCGTGTGTGA
GTGCTCGGCGCGGTTGTACTCATTGTCGCACTTCCGTCCTGACGATTTTC
TAACCCCTGTCGTCTTGGCACGCATGCGTAAGGTTTGTTCTTCTCTCTGC
ATCTGCTCCCCTTCTCGTCGTACGAGGGATAGCCTGCGCGAACTAGTTGG
TTCACAGGGTACACTGAAAGGGTAGGTCGTTTTACCATTACGCTGTAATT
TGGCGCGAGAGTTGTACACCGCAGTAGTAAGTGCTGATACAGACCAACAA
TGCACATACAGACCGACATATATATGAAGCCACGTCCTGACGCGAAATCG
TTGTGCCTCTCACGCCACGGATTTTTGTGAAAGCCCCCGGAGAACAAGCT
CGAATTCTCAGAAGCGGCCATGAAGGAGACTCTCTCGCGCGCCAAGTACG
CGGACAGGAAGAGAAAGCCCGTCAGCCTGACGCAGGTCTTTCACTGCACC
GACAGCCTACATTATGACATGGTAAGCATCTGCACCTCCGAACCCTCATC
GTTCTTTTTGTCGTGTGCACGTGTGCATTTCTTCATATCTATGTCCGTTT
TAGCCGCGCTCCTGTTCCGTATAGCATCCGCTACGTTGCAGCATGTGTTT
TACATGCCTTTTCTGTTGAATTGTTGGTATTTGCTTTCCGAGGTCTCAAG
GGCTCAACGTTTGCCATGGCTATACCGGGTGTCAAATAAAAAACAAGTCA
GATGTGTTTAGAGTAGGCCAACCATGCATTATACGCGTAGATGCGCCCTC
CAAGCGAGCTCCTGTTAGAGAGCTTTCTTCGCAATTATTTTTTCAATCGT
GAACGTTAGTCTCCCCGCGGATCATGTCGCGCGTCCTACATAGGTACTAC
TTCCCCTAATGAACGACATCCTCCCCGGCGGGGCTGCGTTCGTGGCCCAG
GAGGCCGAACAAGCGCGGGTCGCTTCGATGGGCAACGACCACGAGAGCTC
AGACGAGGACGGCGATCCCGAGGGCTTCATCGCGGACATCGCCCTCAGGA
AGTTCGCGAAGGACTTCAAGACCGTGCCTCGTGGTGGGCACGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12815:813..3707-

>mRNA_Ecto-sp13_S_contig12815.2327.1 ID=mRNA_Ecto-sp13_S_contig12815.2327.1|Name=mRNA_Ecto-sp13_S_contig12815.2327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12815:813..3707- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCCGCCTCCGACCGCCGCGGTGGAAAGCGTTCGACGTCTCAAGACCG
AGGCTCCCGCAACCAGAGGGCGCGCGTCGCCGACTCCCAAGAGAATGACA
TCGACCCCATCGAAGAGGCAGTGAGCATCGTCGAGGTTCCCAACAACCAG
CGTCTAGCCGCCAACATCCCCCAGGTGGCGCACGCCGTCGGGGAAAGTAT
AGTCCGTCAGGGCTGGACACCCGCGCTTTCGTGTGCCGTTGCCTGTGAAA
TGCTCATGCGGGCGGGTTGCCCCGGGAGTCTCCGTCGGATACAGCCCCAG
TCTGAGGGGCCAACGGAAAGCTCTCATGCGAAACCACCGCCGTTAGCAGC
ATCTTGCATCAGTTTCTGCTTTTGGCCGGCAACTTCAGAACCGAGACGAA
CTGGGCGCAGGTGGTATTCCGTGAGAGCACCCCCGTCCTCAAGGGGGGCT
ACCTCATGTACAAGCACGCCAGGGGATCGAAGAACTTCAAGGAGTTCGCC
TGAGAGAGCCCTTGAACGAGGTGTTCACCTCCTTTGCCAGCTTTTGTTCG
GTACCCGGTGCCAGTTACAACAGTTCTGTATTTCTACGGCAAGGGCCACA
GTTTTTCCAACCACAACCACTGAAGTAATTTGCGCCCCGGTTGTGTTGCG
ATTGGATGTTGCCCGAGGCCACCTACCAGTCCACCTCCCCATCGCGGTTC
GCTTTTTGGATCAGACGCGGGTAACACACACATCCCTCGCCTTCATCTGG
TAG
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