mRNA_Ecto-sp13_S_contig12814.2326.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12814.2326.1
Unique NamemRNA_Ecto-sp13_S_contig12814.2326.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12814.2326.1 vs. uniprot
Match: D7G3I4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I4_ECTSI)

HSP 1 Score: 352 bits (902), Expect = 2.730e-108
Identity = 186/203 (91.63%), Postives = 190/203 (93.60%), Query Frame = 1 
Query:   79 RAVSLPTEF*GATNYSVFSSNSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDAPKPRSPVAATDFARPGSPSEKESTTAQSGTDKQTTTGMTTPAAASRGRGRTGNTP 687
            R++S P     ATNYSVFSS SDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGID PKPRSP AATDFARPGSPSEK+ TTAQS  +KQTTTGM TPAAASRGRGRTGNTP
Sbjct:  173 RSLSQPNP--EATNYSVFSSTSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVPKPRSPNAATDFARPGSPSEKDITTAQSAPNKQTTTGMITPAAASRGRGRTGNTP 373
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12814.2326.1 vs. uniprot
Match: A0A6H5KR12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR12_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 1.610e-104
Identity = 186/225 (82.67%), Postives = 187/225 (83.11%), Query Frame = 1 
Query:  112 ATNYSVFSSNSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESR---------------------------------PENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDAPKPRSPVAATDFARPGSPSEKESTTAQSGTDKQTTTGMTTPAAASRGRGRTGNTP 687
            ATNYSVFSSNSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESR                                 PENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGID PKPRSP AA DFA PGSPSEK+STTAQSGT KQTTTGMTTPAAASRGRGRTGNTP
Sbjct:  223 ATNYSVFSSNSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRQATAVNTSTAGCHTSEPRTPVPDPGRNQLLFSEPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVPKPRSPNAAADFASPGSPSEKDSTTAQSGTTKQTTTGMTTPAAASRGRGRTGNTP 447
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12814.2326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3I4_ECTSI2.730e-10891.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR12_9PHAE1.610e-10482.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12814contigEcto-sp13_S_contig12814:343..4747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size687
Hectar predicted targeting categoryother localisation
Exons6
Cds size315
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12814.2326.1prot_Ecto-sp13_S_contig12814.2326.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12814 343..957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.7115333-CDS-Ecto-sp13_S_contig12814:342..5011681462685.7115333-CDS-Ecto-sp13_S_contig12814:342..501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12814 343..501 -
1681462685.7235405-CDS-Ecto-sp13_S_contig12814:801..9571681462685.7235405-CDS-Ecto-sp13_S_contig12814:801..957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12814 802..957 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.7318387-UTR-Ecto-sp13_S_contig12814:957..9691681462685.7318387-UTR-Ecto-sp13_S_contig12814:957..969Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12814 958..969 -
1681462685.7479994-UTR-Ecto-sp13_S_contig12814:1392..14951681462685.7479994-UTR-Ecto-sp13_S_contig12814:1392..1495Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12814 1393..1495 -
1681462685.758765-UTR-Ecto-sp13_S_contig12814:2319..24051681462685.758765-UTR-Ecto-sp13_S_contig12814:2319..2405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12814 2320..2405 -
1681462685.767563-UTR-Ecto-sp13_S_contig12814:3813..38731681462685.767563-UTR-Ecto-sp13_S_contig12814:3813..3873Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12814 3814..3873 -
1681462685.7768366-UTR-Ecto-sp13_S_contig12814:4636..47471681462685.7768366-UTR-Ecto-sp13_S_contig12814:4636..4747Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12814 4637..4747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12814.2326.1

>prot_Ecto-sp13_S_contig12814.2326.1 ID=prot_Ecto-sp13_S_contig12814.2326.1|Name=mRNA_Ecto-sp13_S_contig12814.2326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDA
PKPRSPVAATDFARPGSPSEKESTTAQSGTDKQTTTGMTTPAAASRGRGR
TGNTP
back to top

mRNA from alignment at Ecto-sp13_S_contig12814:343..4747-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12814.2326.1 ID=mRNA_Ecto-sp13_S_contig12814.2326.1|Name=mRNA_Ecto-sp13_S_contig12814.2326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12814:343..4747- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGAGGAGGAGATATCCGCCATTCGCGAAGGGGCAGGAGAGGAGCCAC
AGTCCCTTTCGCCACTGCCGAAGCAGTCAGAGCGGTCTCTCTCCCGACCG
AATTCTGAGGTGCGTGAGGTTCTACAGCAACAGGAAGAAAGTTTCTGCAC
CGCTAGCGTACCGTAGGTGGCGTGAAGTATGGTCGTCTCCGCTTTAAGAC
TCCCCGCTTTAAGGGAATCGTGTTTCCAGAAGCATGGTACCCAGCCGGAC
GGGAAGAAAATAGGCGGGTAGTAAGGACACTTCCCTGCTTCAAGGATACC
TTGCTCGAAGAAAAAACACGAGTGTCCTTACAGAGGGGACACCTTTTTAC
GCTTCTGCATCACCATCAACATGCGACACGAAGCGATCGTTTCACTCTCC
CTCGAAGTTCAGAATAAGCTTCGTTGTAACCAGGGTGTCAGCATTCGGCT
CTCTCTCTCTTTCTATCCCACACACATTAAGTCTTTGTGTGAAAACGAAC
GGTCTCTGTGTGTGTGTTTTTTAGAATCGGCAGGGTGTGCGACCTTGCTC
GCATGCACCGTTGTAACATTTCATGTAAATCGACGTTCGTTGTTAGCTCG
ATTGCTCCATGACCAAAAAGCTAAGGCTACCAACGCCCAAGAGGAGGTTT
CGGACTAATCTCGTCGACAGGTTTTCTTGCATGTATCGGTCGGTAATTGC
ACCCTCTTGGTTCTGAATTATCATACGCGTACCCCCCCCCCCCCCTACCG
TCCCCTTGTGGGGCCTCGCCAACCCTGACGTCACGAATGCTTGCGCTTCT
TCTTAATTTGTCGTTTCGCGCCGCCAACCGGAATGTCGGTTTCATTCGAC
GTCACGTGGTGCCACCCCAACTAGGCGACGAACTACTCCGTCTTCAGCAG
TAACTCGGACGTACGAGCTCGGGACCTGAAAAAGGTACAGTACAGTCGAC
CCCGCTTTATAGACGCTCTTCTTAAGGAAACTCCCCGCGGTAAAGACACA
CTTTTTTTCAGAAACGTGGTGCTCCGTGAATGCAAAATGTCGCAGGGGGG
TATCATTCCTACTTCACGCCCCCCTGGCATTTGCCTCGCCAGGCGTGTGT
GTATGGCTGAAGTGTGTGGGGCGTTTGAGACGTGGCTAGATGTAGAGGAC
GACCCACAGGTGTTGGAAGGCGAGGCGGGACTTGCAATAAATGCAGGCGG
TGTCAAAGGAACTCGCCAATTTAGAAGTTGACGAAGATAGGGTGATGTAT
CAAGCGAGGAGGAAGACGGCCGCAGGCCTGAGTCGTGCATTACGTCGTCA
ATCACCGAGGCTGAGGTCCACTCGCGTCTTGAGCAAGTTCGCTCCTATCT
GTACGTGTAGGGGAGGCATGGCGAATACCGCGAAACTCTGTACCTGCTTT
TCAGAGCGGTGCATTCAATTACTCATGAAACGCAAGTCAAGGGAAGGAGC
GGGGGGAAGTGCAATCCACGATTCGCGATTTGTGGAAGAAGTATTAGTCT
ACTCCGTTCGTTGCAGTCCGTGAGTCGCAGTCTTCGTTGCATCCTTGTTT
CACACTGTGTAGCATGTAACCTGCAGAAAAACCAGTGAGCGTACTCTACC
GTGGATCAGTTGATCAATCGTGTGTTTGGTGTGCTGCAGGTAAAGGGTTA
CCAGATGTTACGTGAATAAAGCGTTGATGAAATTTCAATACGTTTCCACG
ACTTGCCCGGTGCGTTGCATGTATTTTTCTTTGGCGCTGTGATGCTGCTG
CTCAAGGCGCATCTTTTGACGCATGGCACGCCTCCATCGACCCCGGGGAT
AGTGAGATACTGTCCCCGGATGCCTTAAAGAAACTCCCCGCGTTAAAGAC
ACAAAAAAGACTGTTATGTACAGTCCGCTAGGGAGCGCAGTCAGTGACGC
TGACCGTCCCTTTGTTTTGGGCCAAATGTTTTCAGCGTCGGAAATGTCTC
ACAATACGATTTTCCATCTGCGAGCCGTAAGTTCTTTTTTTCGTGTTCTT
TTGTGTCAAGAGGGGTTCGGCGAGCAGGGTATGGACCATGCGATGGTTAT
GTGCTGCCGGCTTACTTTTACCTCCCCACGGGCGAAAGGCGTCATTTGTT
CCTTCGTTTTTTGATGTAAAGCGAATGGATGACCCCCACACATGGACCTG
CTGGCACCATCCATCACGAAGCAGTATACTACACGCTGCGACGGTGTGTC
TGATGGGTGTATTAGGTACCACTAGTTTATTTGTTTCACATTTTCATTTT
ATCGGTCTGGGGACGCCATGCACGGCACACCGATATGGTATTGCGGATTT
TTCGCCCAATACCGTCGTTTCTCCTTGTGGCGTACGTGACAGACTCATCT
GGACGAGGCGCGCAACCTCACCAGCAACCGGGCCCGCAAGGTCAAGGACA
TCGCCAGCGGATTCAAGGGCGAAAGCAGGCGAGCTACAGGAGTCAATCCC
ATCACAGCAGGATGCCATACATCCGAACCAAGAACACCTGTGCCCAACCC
TTACCCTAATCGTCTCCCCTTTTCCGAGGATTGTTTTGCATACCCGCCTT
TTCTTCTCGTGGCTTTCGTGCCTGTCTTGCGGGTTATTTTCAAGAGGCTT
GCTCAGGTGTCAGTTCTCGAAGTTCGGTCTGGATGGCGTCAGCCACAACA
TTGTTCTCGGGCTTTGGAAAACATGCTCCTACCGCGGGTGACGTAAGATA
GCACACCCCCTCGAACGGATTCTCAAAACCGGATTACTCCGCACCGTAAA
ACAAACGAAGACGACAAAAACTTTGGCATCGTCTCATCGAGAAATATCCG
AAAAATCGTTTTTCTTGTGGCGTCCTGTTCTTTCTGGGGTTGTCGAGCTT
AAAGAATCGGCCGAGGGTTGTGTAGCATCTTGTTCGAAAGCTGTGGTAAA
CGGTTGTTCTACACGCAGGGAGTCCTGGTTCTTGTCTCTCCCCGCTCTCC
CCAAACACGCTATTTGTAGGGTGATTTGTCCATCCGCGGATGCCGAGATC
CGTTGACCACTCAAGCCGTTTCCCACAGTAAACCCGGGAGCGTTTCTCGC
ACGAACCACGGTATAAATACTCTGCTGAGTCTCCGGCTGACAACGCAGAT
GCTCCGAGACGTCTCTAGGTGTGCCATATGATTCAAGTCGTGAAGTTTTG
CTGGTGTAGGACATGGTCAACGAAGGATGTGATATCTGCCGAGTGAATTT
ACCGTGAAGTGGTTTCGTTGTGTGGATGTTTCCGAACCCTTGTGGATTGC
AGGCCCGAAAATGTGGAGGTTTTCCACAAGAGGCACAAGGAGCAGGAGGC
TGACTACCGTCACAAGGTGCACCAAGGAAAGGAGACTCTCAAGAAGACCT
CGCAGGTCTGTTGCGAGCCGCTAGTGTTGGTGCTGTGCTTTGCATCAGTG
TTGACGCTGCTGCTGCATTGGATTGTTTGGAACCCGGTTTCCAAGGCTCC
CATTGTCTCCGTCTCGACACGCACGACACGCTGTTGTTTCTCTCCTACAG
CAGGTGGTTCTTCCACTTTCGCCGTTGTTGTTGCTGTCTCCGTTGATGGT
GGTATTGTCATTGCTGCTGCCCCACAAGATGCCTTGATGATGACGATGTT
TTTGTTGTTGCTGCACACGATCTCGACCAGTACTCCTTCTCACGTCCTGA
AGCAGTAATTGGTTTTGTCCGCTGCTGCCGCCGTTGTCCTTGATGTCTGT
CTCAATTGGCGCTGTGCTTGTTGCTTGTGTTGATGGTGATGTTGTTGTTG
CTGCTGTTTCCCTGCTGATGACGTACAGGGCACCGACGCGATGTACAACT
TCGTGCTGAAGCTTAACCTAGCAACTACGGAGGGCAAGGAGCGCTTCATG
AAGAAGTGGGCCATCGGCAGGATCGCCAACGGAGAGTCGATCAATCCCCG
CGAGGGCTGGAAGTTCTTGAAGAGCCTGGGCATCGATGCGCCTAAGGTTC
GCCAGCTCTTTGCTTTGCGTCGCCGTTGCCCCCAAGACGACGTGAATTAC
TCTAGCTAGCAGTTCGTAACGCAAGACCGAAACCGTCTGCAAACGAGTTT
AAAGCCTTCTGCCTTTTTATTCATCCCCTCGTTACGCAAGAAGGGATCCT
CACGAGTTGGAGCTTCTTCTTTCTGTCCATCCCCTCGTGATTGTTGCCAC
GAAATTGAACGTCAAGCACCCAACCCGCCGCTTCTTACACAACACACCCT
TGTCCCCGTGTCGCCGTTGTCTCTCACTCGTCGCCATGACGAGCAGCCAA
GATCGCCCGTTGCCGCCACCGACTTTGCAAGGCCGGGTTCCCCGTCTGAG
AAAGAAAGCACCACCGCCCAAAGCGGCACCGACAAGCAGACGACTACCGG
CATGACCACACCCGCCGCCGCCTCTCGGGGTAGGGGACGGACAGGAAACA
CCCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12814:343..4747-

>mRNA_Ecto-sp13_S_contig12814.2326.1 ID=mRNA_Ecto-sp13_S_contig12814.2326.1|Name=mRNA_Ecto-sp13_S_contig12814.2326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12814:343..4747- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAACTTCGTGCTGAAGCTTAACCTAGCAACTACGGAGGGCAAGGA
GCGCTTCATGAAGAAGTGGGCCATCGGCAGGATCGCCAACGGAGAGTCGA
TCAATCCCCGCGAGGGCTGGAAGTTCTTGAAGAGCCTGGGCATCGATGCG
CCTAAGCCAAGATCGCCCGTTGCCGCCACCGACTTTGCAAGGCCGGGTTC
CCCGTCTGAGAAAGAAAGCACCACCGCCCAAAGCGGCACCGACAAGCAGA
CGACTACCGGCATGACCACACCCGCCGCCGCCTCTCGGGGTAGGGGACGG
ACAGGAAACACCCCC
back to top