prot_Ecto-sp13_S_contig12809.2321.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12809.2321.1
Unique Nameprot_Ecto-sp13_S_contig12809.2321.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length129
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12809.2321.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 7.820e-17
Identity = 83/127 (65.35%), Postives = 88/127 (69.29%), Query Frame = 0 
Query:    2 GSPAATGVAPPTSESSGDAEGKAAAPPNEKGTCRAGAGARAAAPPXXXXXXPSSTTRGKRRQRQSAPLEXXXXXXXXXXXXXXXXXXHARKPARFANAYVGSSDDSEVPKSRESADSNSSSDDGSEP 128
            GSPA TGV PPT  S+GDA GKA APP +           AAAP       PSSTTRG+RRQRQ     XXXXXXXXXXXXXXXXXX       FA+AYVGSSDDSEVP+SRESA S SSSDDGSEP
Sbjct:  754 GSPAVTGVVPPTPGSAGDAAGKATAPPTK-----------AAAP------GPSSTTRGRRRQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFADAYVGSSDDSEVPESRESAHSTSSSDDGSEP 863
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BLAST of mRNA_Ecto-sp13_S_contig12809.2321.1 vs. uniprot
Match: D8LNQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.480e-14
Identity = 61/76 (80.26%), Postives = 63/76 (82.89%), Query Frame = 0 
Query:   53 PSSTTRGKRRQRQSAPLEXXXXXXXXXXXXXXXXXXHARKPARFANAYVGSSDDSEVPKSRESADSNSSSDDGSEP 128
            PSS TRG RRQRQ AP E     XXXXXXXXXXXXX    PARFANA+VGSSDDSEVP+SRESADSNSSSDDGSEP
Sbjct:  398 PSSATRGGRRQRQPAPPEKAAAPXXXXXXXXXXXXXXXXXPARFANAHVGSSDDSEVPESRESADSNSSSDDGSEP 473
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12809.2321.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE7.820e-1765.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ4_ECTSI3.480e-1480.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12809contigEcto-sp13_S_contig12809:2208..2594 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12809.2321.1mRNA_Ecto-sp13_S_contig12809.2321.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12809 2208..2594 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12809.2321.1 ID=prot_Ecto-sp13_S_contig12809.2321.1|Name=mRNA_Ecto-sp13_S_contig12809.2321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
AGSPAATGVAPPTSESSGDAEGKAAAPPNEKGTCRAGAGARAAAPPKAAA
PRPSSTTRGKRRQRQSAPLEKAAAPGPSSATRGRRQQRHARKPARFANAY
VGSSDDSEVPKSRESADSNSSSDDGSEP*
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