mRNA_Ecto-sp13_S_contig12809.2321.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12809.2321.1
Unique NamemRNA_Ecto-sp13_S_contig12809.2321.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12809.2321.1 vs. uniprot
Match: D7FPI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI0_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.270e-21
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 3 
Query:    3 GVSCGNGRRPTYVRVVRRRGRKGRRAAEREGYLSRGRGRTRRGAAEGGGAKAVKHNTW 176
            GVSCG+GRRPTY+RV RR GRKGRRAAEREGYLSRG GRTRRG AEG G +AVKHNTW
Sbjct:  172 GVSCGHGRRPTYLRVGRRCGRKGRRAAEREGYLSRGSGRTRRGPAEGSGTRAVKHNTW 229
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BLAST of mRNA_Ecto-sp13_S_contig12809.2321.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 7.820e-17
Identity = 83/127 (65.35%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:    4 GSPAATGVAPPTSESSGDAEGKAAAPPNEKGTCRAGAGARAAAPPXXXXXXPSSTTRGKRRQRQSAPLEXXXXXXXXXXXXXXXXXXHARKPARFANAYVGSSDDSEVPKSRESADSNSSSDDGSEP 384
            GSPA TGV PPT  S+GDA GKA APP +           AAAP       PSSTTRG+RRQRQ     XXXXXXXXXXXXXXXXXX       FA+AYVGSSDDSEVP+SRESA S SSSDDGSEP
Sbjct:  754 GSPAVTGVVPPTPGSAGDAAGKATAPPTK-----------AAAP------GPSSTTRGRRRQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFADAYVGSSDDSEVPESRESAHSTSSSDDGSEP 863
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BLAST of mRNA_Ecto-sp13_S_contig12809.2321.1 vs. uniprot
Match: D8LNQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.480e-14
Identity = 61/76 (80.26%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:  157 PSSTTRGKRRQRQSAPLEXXXXXXXXXXXXXXXXXXHARKPARFANAYVGSSDDSEVPKSRESADSNSSSDDGSEP 384
            PSS TRG RRQRQ AP E     XXXXXXXXXXXXX    PARFANA+VGSSDDSEVP+SRESADSNSSSDDGSEP
Sbjct:  398 PSSATRGGRRQRQPAPPEKAAAPXXXXXXXXXXXXXXXXXPARFANAHVGSSDDSEVPESRESADSNSSSDDGSEP 473
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12809.2321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPI0_ECTSI5.270e-2184.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX32_9PHAE7.820e-1765.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ4_ECTSI3.480e-1480.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12809contigEcto-sp13_S_contig12809:2208..2594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size387
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000010.1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.3874495-CDS-Ecto-sp13_S_contig12809:2207..25941681462685.3874495-CDS-Ecto-sp13_S_contig12809:2207..2594Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12809 2208..2594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12809.2321.1prot_Ecto-sp13_S_contig12809.2321.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12809 2208..2594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12809.2321.1

>prot_Ecto-sp13_S_contig12809.2321.1 ID=prot_Ecto-sp13_S_contig12809.2321.1|Name=mRNA_Ecto-sp13_S_contig12809.2321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
AGSPAATGVAPPTSESSGDAEGKAAAPPNEKGTCRAGAGARAAAPPKAAA
PRPSSTTRGKRRQRQSAPLEKAAAPGPSSATRGRRQQRHARKPARFANAY
VGSSDDSEVPKSRESADSNSSSDDGSEP*
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mRNA from alignment at Ecto-sp13_S_contig12809:2208..2594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12809.2321.1 ID=mRNA_Ecto-sp13_S_contig12809.2321.1|Name=mRNA_Ecto-sp13_S_contig12809.2321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12809:2208..2594+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGGTCTCCTGCGGCAACGGGCGTCGCCCCACCTACGTCCGAGTCGTC
AGGAGACGCGGAAGGAAAGGCCGCCGCGCCGCCGAACGAGAAGGGTACTT
GTCGCGCGGGCGCGGGCGCACGCGCCGCGGCGCCGCCGAAGGCGGCGGCG
CCAAGGCCGTCAAGCACAACACGTGGTAAACGGCGGCAGAGACAGTCTGC
GCCGCTGGAGAAGGCGGCGGCGCCAGGGCCGTCAAGCGCAACACGTGGTC
GACGGCAGCAGAGGCACGCCAGGAAACCTGCCAGATTTGCGAACGCGTAT
GTGGGGTCCAGTGATGACAGCGAGGTTCCCAAGAGCAGGGAATCAGCAGA
CTCGAATAGTAGTAGCGACGATGGGAGCGAGCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12809:2208..2594+

>mRNA_Ecto-sp13_S_contig12809.2321.1 ID=mRNA_Ecto-sp13_S_contig12809.2321.1|Name=mRNA_Ecto-sp13_S_contig12809.2321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12809:2208..2594+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGGTCTCCTGCGGCAACGGGCGTCGCCCCACCTACGTCCGAGTCGTC
AGGAGACGCGGAAGGAAAGGCCGCCGCGCCGCCGAACGAGAAGGGTACTT
GTCGCGCGGGCGCGGGCGCACGCGCCGCGGCGCCGCCGAAGGCGGCGGCG
CCAAGGCCGTCAAGCACAACACGTGGTAAACGGCGGCAGAGACAGTCTGC
GCCGCTGGAGAAGGCGGCGGCGCCAGGGCCGTCAAGCGCAACACGTGGTC
GACGGCAGCAGAGGCACGCCAGGAAACCTGCCAGATTTGCGAACGCGTAT
GTGGGGTCCAGTGATGACAGCGAGGTTCCCAAGAGCAGGGAATCAGCAGA
CTCGAATAGTAGTAGCGACGATGGGAGCGAGCCTTGA
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