mRNA_Ecto-sp13_S_contig12807.2320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12807.2320.1
Unique NamemRNA_Ecto-sp13_S_contig12807.2320.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12807.2320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12807contigEcto-sp13_S_contig12807:963..2645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1684
Hectar predicted targeting categoryother localisation
Exons1
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.349086-CDS-Ecto-sp13_S_contig12807:962..14601681462685.349086-CDS-Ecto-sp13_S_contig12807:962..1460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12807 963..1460 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.3602786-UTR-Ecto-sp13_S_contig12807:1460..26451681462685.3602786-UTR-Ecto-sp13_S_contig12807:1460..2645Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12807 1461..2645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12807.2320.1prot_Ecto-sp13_S_contig12807.2320.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12807 963..1460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12807.2320.1

>prot_Ecto-sp13_S_contig12807.2320.1 ID=prot_Ecto-sp13_S_contig12807.2320.1|Name=mRNA_Ecto-sp13_S_contig12807.2320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
AWEEGNWTGGGEENAPARGGRRLADVASIAPFEGRIVGALAAAGGWRPGA
VEAALLEGAESPAAAARHSGGGRPPRVSAAPGTGSIEGKGKLGMIEDAGR
RQQQRRRWRRRRRLVGREGKGGDESDTRRGDATRGSGSGGMGVQEDRGFV
AGEEEGAPPRPLTRT*
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mRNA from alignment at Ecto-sp13_S_contig12807:963..2645+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12807.2320.1 ID=mRNA_Ecto-sp13_S_contig12807.2320.1|Name=mRNA_Ecto-sp13_S_contig12807.2320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1683bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12807:963..2645+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATGGGAGGAGGGCAACTGGACAGGCGGGGGGGAGGAGAACGCCCCAGC
AAGAGGAGGAAGACGTCTCGCCGATGTGGCATCGATTGCTCCTTTTGAAG
GAAGAATCGTTGGGGCGTTAGCAGCAGCAGGAGGGTGGCGGCCCGGGGCC
GTGGAGGCTGCGTTGTTAGAAGGGGCGGAGTCGCCGGCGGCAGCAGCGAG
ACATAGCGGTGGTGGAAGACCCCCTCGCGTGAGCGCTGCGCCCGGAACGG
GCTCGATTGAAGGGAAGGGTAAACTCGGGATGATTGAGGACGCGGGACGG
CGGCAGCAGCAGCGGCGACGATGGCGGCGGCGGCGAAGACTCGTCGGCCG
TGAAGGGAAAGGGGGTGATGAGTCCGACACCCGGAGGGGTGACGCAACGA
GGGGATCGGGGAGTGGGGGTATGGGGGTTCAGGAGGACCGAGGCTTTGTT
GCGGGGGAGGAGGAGGGTGCCCCGCCCAGGCCCTTGACCAGAACGTGAAC
AAAACAGATACTGAAGCGGCCCGGTTCGGTCGCAAGGAAAATTACGTTGT
CTGCTCTGGTCGGTGCGGTACTGGAGGGTAAGAAAGGGACATGTGGTGTG
TGCGATGCTGAAATCGTCGAACATCCGACCAATCTTCCCCTCTACCCCCC
CTTGCCCCCCTTTTGATTTGCTCTTCTGCCTCGGATGCGTTCGAACCCCA
CCCCCAGCGTCTTGTTCGTTTGTTGGTGGGGGGGGCAGGTTCTTGGAAAG
CTCTTCTTGGCGATATGTGTAGAGCGAGACTTCAAAACCAGAAGTGGTGT
CGTCGAGAAAAAATTTGGGTGTAAACAGACAAGGCCAAACTCGGTGTTGA
CGGGTGCACAGAAGAAGTGACTCGTCGTCTTGTTGTGCGGTGGTCAATGT
TTGTGCTCGTTGTCTGCGATTGTGTGTAGGTGAGAGAGGGGAGGGAGTGG
GGGGAGACGTTGGGGCCAAGTTCGAGCAACTGAACGAGTCGCTTTCATGG
CATGGCATGGAGTACTGCTGCTGGTGTGTGATCGTTCACGCTCTGCGAGG
CAGCTATCTGACTGTATGATACGGCGTTTCAGGAACTTTCTCCTGTCCGT
GGTGGGGAGGTTTCGCGGGGATCATCTCAGCTGCTTGAGGCCCACCTTCT
GGTGCTTTTTATGTCCTTTTGTTTGGTCTTGCCTCTTTGTTGATAGTGCT
GGAGCATGAGTACAGCTCGCCGCAAGTAGGTCCACACGAGTGCATATAGT
GCGGTTGAGTCCGGACGCATCCGCCCGGCTGCTACCTGCCTTTGAAAGCC
TTGTGTAGACTGCTCGCTACGTGAAGGTGATCGATTGTACACCACTCGCT
CGAGTGGTCTCACCTCTACTCATAGAAAGTCGGGGGGTGTATGTTTTTTT
CGTTCGTTGATGTCTTGGTTTTTTTCAATTTTGCGTGCATGCGTGGGCCC
GTTGTTGATTTCATACGACCCATGTTCTCTCTGTCTGTTTGTCTTTGTAT
GATACGTGATTATTTTGTTGTGCGCCCATCTCTTTCGTTCATTCCGAGTT
CAGAAGTGTTAGTATTAGGAGCGTCTTCTTGTAAGATGGTTGATTCAGTT
CGACCCACATCCGTCACTGAGAAAAATTTCTGCTTCAATTGTGTAGTCTT
GAGCTGCACTTGACCCGCCTGGTACATTTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12807:963..2645+

>mRNA_Ecto-sp13_S_contig12807.2320.1 ID=mRNA_Ecto-sp13_S_contig12807.2320.1|Name=mRNA_Ecto-sp13_S_contig12807.2320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12807:963..2645+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATGGGAGGAGGGCAACTGGACAGGCGGGGGGGAGGAGAACGCCCCAGC
AAGAGGAGGAAGACGTCTCGCCGATGTGGCATCGATTGCTCCTTTTGAAG
GAAGAATCGTTGGGGCGTTAGCAGCAGCAGGAGGGTGGCGGCCCGGGGCC
GTGGAGGCTGCGTTGTTAGAAGGGGCGGAGTCGCCGGCGGCAGCAGCGAG
ACATAGCGGTGGTGGAAGACCCCCTCGCGTGAGCGCTGCGCCCGGAACGG
GCTCGATTGAAGGGAAGGGTAAACTCGGGATGATTGAGGACGCGGGACGG
CGGCAGCAGCAGCGGCGACGATGGCGGCGGCGGCGAAGACTCGTCGGCCG
TGAAGGGAAAGGGGGTGATGAGTCCGACACCCGGAGGGGTGACGCAACGA
GGGGATCGGGGAGTGGGGGTATGGGGGTTCAGGAGGACCGAGGCTTTGTT
GCGGGGGAGGAGGAGGGTGCCCCGCCCAGGCCCTTGACCAGAACGTGA
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