mRNA_Ecto-sp13_S_contig12802.2318.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12802.2318.1
Unique NamemRNA_Ecto-sp13_S_contig12802.2318.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12802.2318.1 vs. uniprot
Match: A0A6H5KQR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR0_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 2.860e-90
Identity = 225/242 (92.98%), Postives = 231/242 (95.45%), Query Frame = 1 
Query:    1 ERLKEAARLKKQSDERVAELEPEVERLAARCKELVQQKDITSEERARIENALRQQHRLADEQRVQEAANRLAGLEQEKHNLLSRVLEAEARADRQRRAVEDMVLALEQAMGNQAALKAAAATQRADDAVRESSPIPGVDTTEAEKAAREKAAGLQEELSKANIRVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAVASGPSGHQQDMFEVEAILKAEVRDLEER 726
            E+LKEAARLKKQSDERVAELEPEVERLAARCKELVQQKDITSEERARIENALRQQHRLADEQRVQE ANRLAGLEQE+ NLLSRVLEAEA ADR R AVED+VL LEQAMG QAALKAAAATQRA+DAVRESSP PGVDTTEAEKAAREKAAGLQEELSKANIRV+DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ A ASGPS HQQDMFEVEAILKAEVRDLEER
Sbjct:  259 EKLKEAARLKKQSDERVAELEPEVERLAARCKELVQQKDITSEERARIENALRQQHRLADEQRVQETANRLAGLEQEQQNLLSRVLEAEANADRHRHAVEDLVLVLEQAMGTQAALKAAAATQRAEDAVRESSPTPGVDTTEAEKAAREKAAGLQEELSKANIRVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETAAASGPSEHQQDMFEVEAILKAEVRDLEER 500
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BLAST of mRNA_Ecto-sp13_S_contig12802.2318.1 vs. uniprot
Match: D7FYB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB0_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 9.790e-83
Identity = 210/229 (91.70%), Postives = 218/229 (95.20%), Query Frame = 1 
Query:   40 DERVAELEPEVERLAARCKELVQQKDITSEERARIENALRQQHRLADEQRVQEAANRLAGLEQEKHNLLSRVLEAEARADRQRRAVEDMVLALEQAMGNQAALKAAAATQRADDAVRESSPIPGVDTTEAEKAAREKAAGLQEELSKANIRVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAVASGPSGHQQDMFEVEAILKAEVRDLEER 726
            DER+AELEPE+ERLA RCKELVQQKDITSEERARIENALRQQHRLADEQRVQ+ ANRLA LEQE+HNLLSRVLEAEA ADRQRRAVED+VL LEQAM  QAALKAAAATQRA+DAVRESSP PGVDTTEAE AAREKAAGLQEELSKANIRV+DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAA ASGPS HQQDMF+VEAILKAEVRDLEER
Sbjct:  672 DERIAELEPELERLAVRCKELVQQKDITSEERARIENALRQQHRLADEQRVQDTANRLAALEQEQHNLLSRVLEAEAEADRQRRAVEDLVLVLEQAMSTQAALKAAAATQRAEDAVRESSPEPGVDTTEAENAAREKAAGLQEELSKANIRVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAAASGPSEHQQDMFQVEAILKAEVRDLEER 900
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12802.2318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQR0_9PHAE2.860e-9092.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYB0_ECTSI9.790e-8391.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12802contigEcto-sp13_S_contig12802:826..3330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size728
Hectar predicted targeting categoryother localisation
Exons5
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.2027164-CDS-Ecto-sp13_S_contig12802:825..9881681462685.2027164-CDS-Ecto-sp13_S_contig12802:825..988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12802 826..988 -
1681462685.2122583-CDS-Ecto-sp13_S_contig12802:1224..13971681462685.2122583-CDS-Ecto-sp13_S_contig12802:1224..1397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12802 1225..1397 -
1681462685.2219412-CDS-Ecto-sp13_S_contig12802:1958..20611681462685.2219412-CDS-Ecto-sp13_S_contig12802:1958..2061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12802 1959..2061 -
1681462685.2314708-CDS-Ecto-sp13_S_contig12802:2870..30281681462685.2314708-CDS-Ecto-sp13_S_contig12802:2870..3028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12802 2871..3028 -
1681462685.2459612-CDS-Ecto-sp13_S_contig12802:3201..33301681462685.2459612-CDS-Ecto-sp13_S_contig12802:3201..3330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12802 3202..3330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12802.2318.1prot_Ecto-sp13_S_contig12802.2318.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12802 826..3330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12802.2318.1

>prot_Ecto-sp13_S_contig12802.2318.1 ID=prot_Ecto-sp13_S_contig12802.2318.1|Name=mRNA_Ecto-sp13_S_contig12802.2318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
ERLKEAARLKKQSDERVAELEPEVERLAARCKELVQQKDITSEERARIEN
ALRQQHRLADEQRVQEAANRLAGLEQEKHNLLSRVLEAEARADRQRRAVE
DMVLALEQAMGNQAALKAAAATQRADDAVRESSPIPGVDTTEAEKAAREK
AAGLQEELSKANIRVDDLQQELTRAEQKAMEAVHEQKRAREAVERAALAE
EQARAAAEAAKAAVASGPSGHQQDMFEVEAILKAEVRDLEER
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mRNA from alignment at Ecto-sp13_S_contig12802:826..3330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12802.2318.1 ID=mRNA_Ecto-sp13_S_contig12802.2318.1|Name=mRNA_Ecto-sp13_S_contig12802.2318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12802:826..3330- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGGCTTAAAGAAGCCGCTCGGCTCAAGAAGCAGAGCGACGAGCGGGT
CGCGGAGCTGGAGCCGGAGGTGGAGAGGCTAGCTGCCAGATGCAAGGAAC
TCGTTCAGCAGAAGGACATTACGAGCGAGGTGGGCTTCGAGAACAAGCAG
CGACGTATTTCGGTAGACCCGACAAACAAGGTTGTTCACATGTTAATGAA
AATTGCGAGTGTCGCGCAATTCTTGGCGCTGTCGTTTGATCCATGCGCTA
GCATAACCAATGCTCATATCTGTCAGTACCACCCTCCCCCTTTTGGGTTT
AGGAACGAGCTCGAATCGAGAATGCTCTACGTCAGCAACACCGCTTGGCC
GACGAACAGAGAGTGCAGGAGGCGGCAAATCGGCTAGCAGGGCTAGAGCA
GGAGAAACACAATCTGCTGTCGAGGGTGCTCGAAGCCGAGGCGAGGGCCG
ACAGACAGCGGTAAGAATGGACACACACCAGCCTTCCCTTTTCGAACAAG
CGACTTGTGAACCCATCAGGCATGTCAACAAGCTAACGATTTTTAGCGTT
GCCTTCGTAAAACGCGAGGAAGGCTCTCGAGGAAGTCAATAAGCAACACA
GCCAATACGAGGTAGAGACACTGCACGCGAAGGCAATTTGTACTTCTGGT
TCAAGGTACCCAAAGACGGTCTCACATCGGCCTGATGCTTTTCTTCGTTT
GGAGTGTTTTTTTTGTAGTTGTCCCCTCAGCCCGGCGGCCTACACAATCG
GCCGTCCATCGTCCCTTAATTCGATTTTATTCAGTAGCTTGGCGCTTAAC
GTTGTTACCTGAAAGCCATGTTTCGGGGATACCTCGCCGAGTCTAGTCGC
TTCACACCATTGTTGCTACTGAGCCCTCCGCCCGTTTCGCACGAGCCCCT
CACCCGGCGCAATCTTTCCTTCTTCGGGTCACCATGGTTATCATTCTACG
CAACACTGCCTGCCTCGATTTCTTCCAACCCCCACCCGACCGTGCTGATT
AGAGCTACAATGGCTTTGGATTCCTCTGGGATGACTCTGACCTGCGGACC
TCGCTGACTCGCCTCGTAAGCGTAGCTCCGCAGGAGATACTTTGACCTGT
AACGCCGCCGTGGTTGGCCATCGTGTTCTTTGCATGACGATTGGAACGGT
CTTCACTGCTCTTATCGGCCTAGAGGTCGGGTGATCCAATCTGTCGCGAT
ATGCCCATACTATCTGATACTTTGTGATGTCGCCGAACTCCCACCGATGC
GATGAATGCTTACCATTAGGCGTGCTGTAGAAGACATGGTGCTGGCGCTG
GAGCAGGCCATGGGTAACCAGGCAGCGCTGAAGGCGGCGGCGGCAACGCA
AAGGGCCGACGATGCTGTGAGGGTGAGGACATCATAGCGAACGGTGTTGT
GTGCGGGGTGGGAAAATGCGGGCTCAGTTCATTGCGGAAATGTAGTCTTA
TCTGGTAGTTGTCGGGACTTTGCCCCAACCATGCCTGCGCGGAGATGGCA
CCAGTAGAAAGCCTCGAGTAAGCGACGCATGTGAAATTGGAGCGGGAAAC
GGCGCAAGAGCCTGGGGATATCTGTGAAGATCGGAGATTCACGCAAAGCC
GGATAGAGTTTCGCCTATACTTTCTTCCGGAACAGAGTGCGCCTTCCGCT
TTCGTTGAAGAGGGAGTGGGAACGTTAGCAAATCAACTATGAGCATGTCG
ACGACAATATCATGACGCTCGCGTATCCTGCCCTGTTTGTACAGAGGATG
TGTCGTTTACGTCATAGGTTGGACCACACAATTGAACTACCATGGCTTTG
GTGAAGGGTCTGTGTGTGTAGATCAGGCCAGCTAGCGCACGCTCCCAGCA
CGTGCGACAGCTACAACCATAAGGAGCGCACGTCGTCGCTCACACCACCC
GCGCTGGCGGCGTGATGCCGGCGGTGATAGCAGGAGTCGTCGCCCATACC
TGGCGTTGACACCACCGAGGCCGAAAAGGCCGCTCGGGAGAAGGCTGCCG
GGCTTCAGGAGGAGCTCTCCAAGGCGAACATCAGGGTCGACGACTTGCAG
CAGGAGCTCACGAGGGCGGAGCAGAAAGCGATGGAAGCAGTCCATGAGCA
GAAAAGGTGAATCGAACCCGAGCAGTTCGTGTTGAGTAGGTTGAGTCACC
TGCGACAACCAAGAGAGGACAAAGCACCAACAGCCGTGTGCGACGACGAG
TCAACACGCACTATGGCACACGCGGGACATCAATTACTAAATAAGTGCAC
CCCGTTCATTCGCCGACGAGTTAACGCTGTCCGTGCTACCACACGCACGT
GTTGGAAACCGCCTGACCACTGCACGATTGTAACGTATAAAGGGCTCGAG
AGGCAGTAGAGAGGGCGGCGTTGGCCGAGGAACAAGCACGGGCCGCGGCC
GAAGCCGCCAAAGCCGCCGTAGCGAGCGGCCCAAGCGGGCACCAGCAGGA
CATGTTCGAGGTGGAAGCGATTCTCAAAGCAGAGGTCCGCGACCTCGAGG
AAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12802:826..3330-

>mRNA_Ecto-sp13_S_contig12802.2318.1 ID=mRNA_Ecto-sp13_S_contig12802.2318.1|Name=mRNA_Ecto-sp13_S_contig12802.2318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12802:826..3330- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGGCTTAAAGAAGCCGCTCGGCTCAAGAAGCAGAGCGACGAGCGGGT
CGCGGAGCTGGAGCCGGAGGTGGAGAGGCTAGCTGCCAGATGCAAGGAAC
TCGTTCAGCAGAAGGACATTACGAGCGAGGAACGAGCTCGAATCGAGAAT
GCTCTACGTCAGCAACACCGCTTGGCCGACGAACAGAGAGTGCAGGAGGC
GGCAAATCGGCTAGCAGGGCTAGAGCAGGAGAAACACAATCTGCTGTCGA
GGGTGCTCGAAGCCGAGGCGAGGGCCGACAGACAGCGGCGTGCTGTAGAA
GACATGGTGCTGGCGCTGGAGCAGGCCATGGGTAACCAGGCAGCGCTGAA
GGCGGCGGCGGCAACGCAAAGGGCCGACGATGCTGTGAGGGAGTCGTCGC
CCATACCTGGCGTTGACACCACCGAGGCCGAAAAGGCCGCTCGGGAGAAG
GCTGCCGGGCTTCAGGAGGAGCTCTCCAAGGCGAACATCAGGGTCGACGA
CTTGCAGCAGGAGCTCACGAGGGCGGAGCAGAAAGCGATGGAAGCAGTCC
ATGAGCAGAAAAGGGCTCGAGAGGCAGTAGAGAGGGCGGCGTTGGCCGAG
GAACAAGCACGGGCCGCGGCCGAAGCCGCCAAAGCCGCCGTAGCGAGCGG
CCCAAGCGGGCACCAGCAGGACATGTTCGAGGTGGAAGCGATTCTCAAAG
CAGAGGTCCGCGACCTCGAGGAAAGG
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