mRNA_Ecto-sp13_S_contig12800.2317.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12800.2317.1
Unique NamemRNA_Ecto-sp13_S_contig12800.2317.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12800.2317.1 vs. uniprot
Match: D7FVY2_ECTSI (EamA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVY2_ECTSI)

HSP 1 Score: 420 bits (1080), Expect = 8.800e-140
Identity = 309/363 (85.12%), Postives = 318/363 (87.60%), Query Frame = 1 
Query:    1 MRSPGVTPVLFGACLASTRVRECSCFTASLRVSTGRPAAAAAPASLWRSNKMNSTKNSSGRPARFSPVRTATARGRPSSTASSPTXXXXXXXXXXXXXXXXXXXXXXXGKPSSFKGDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPQPPRVDAEGSMTTSQQLSAEVSARRSRSRAWRLVGFPPVGYYDGDTKGLTSSSSSSSPLVGEDTAAGTTAADATDSALRGRYREEHRDWQEKLERLVDMSEPPPELLAAAETRSIGDIIMXXXXXXXXXXXXXXXXXXXXXX---AEDGLWTSRAMLAGAAMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPFLPFLKNVNPGVFRAGAEV 1080
            MRSPGVTPVLFGACLAS  VRECSCFTASLRVSTGRPAAAAAPASLWRSNK+NSTKNSSGRPARFS  RTATARGRPSS A    XXXX          XXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX PQPP+VDAEGSMTTSQQLSAEVSARRSRSRAW LVGFPP GYYDGD++GLTSSSS   PL+GED+AAG   ADATDSALRGRYREEHRDWQEKLERLVDMSEPPPELLAAA+TRSIGD+  XXXXXXXXXXXXXXXXXXXXXX   AEDGLWTSRAMLAGAAMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPF+PFLK VNPGVFRAGAEV
Sbjct:    1 MRSPGVTPVLFGACLASAGVRECSCFTASLRVSTGRPAAAAAPASLWRSNKINSTKNSSGRPARFSAARTATARGRPSSAAXXXXXXXXALGDCSGDVSXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQPPQVDAEGSMTTSQQLSAEVSARRSRSRAWGLVGFPPGGYYDGDSEGLTSSSSY--PLIGEDSAAGAAVADATDSALRGRYREEHRDWQEKLERLVDMSEPPPELLAAAQTRSIGDMXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDGLWTSRAMLAGAAMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPFVPFLKKVNPGVFRAGAEV 359
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BLAST of mRNA_Ecto-sp13_S_contig12800.2317.1 vs. uniprot
Match: A0A7S0THX4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0THX4_HEMAN)

HSP 1 Score: 67.0 bits (162), Expect = 9.200e-9
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  886 GLWTSRAMLAGAAMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPFLPFLKNVNPGVFRAGAEV 1080
            GLW +RA +   A LYGTNFGCVKLL E++ +SLAAA RF++A     PFL  +   V   G EV
Sbjct:    1 GLWFTRATVLFVAFLYGTNFGCVKLLGENMSVSLAAAARFTLAAACLAPFLGQLRKEVVGVGLEV 65
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BLAST of mRNA_Ecto-sp13_S_contig12800.2317.1 vs. uniprot
Match: A0A835ZPH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPH7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.130e-7
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  886 GLWTSRAMLAGAAMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPFLPFLKNVNPGVFRAGAEV 1080
            GLW +R +L  A+ LYGTNF  VKLLEES+  S AAALRF +A +   P L  +     R G E+
Sbjct:  138 GLWQARLLLLLASALYGTNFASVKLLEESLEPSTAAALRFGIAALALAPALTRITGKALRDGLEI 202
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BLAST of mRNA_Ecto-sp13_S_contig12800.2317.1 vs. uniprot
Match: A0A7S0DWX9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DWX9_9CRYP)

HSP 1 Score: 60.1 bits (144), Expect = 2.570e-6
Identity = 27/61 (44.26%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  898 SRAMLAGAAMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPFLPFLKNVNPGVFRAGAEV 1080
            +R +L   A LYGTNFG +K+++E++  S+AA LRF++AL    PFLK+V   + + G E+
Sbjct:  105 TRLILLMVAALYGTNFGSIKIMQEALDPSVAAILRFTLALAALSPFLKSVPKDMIKPGVEI 165
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BLAST of mRNA_Ecto-sp13_S_contig12800.2317.1 vs. uniprot
Match: A0A7S2UPB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPB2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.400e-6
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  889 LWTSRAMLAGAAMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPFLPFL 1038
            +W +R +L  AA LYGTNF  VK+++ES+P+ +A ALRF +A +  LP+L
Sbjct:  201 IWKARLLLIAAAALYGTNFTVVKIVDESIPVGIATALRFGMAAIVGLPWL 250
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BLAST of mRNA_Ecto-sp13_S_contig12800.2317.1 vs. uniprot
Match: L1IX33_GUITC (EamA domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IX33_GUITC)

HSP 1 Score: 57.0 bits (136), Expect = 1.630e-5
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  922 AMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPFLPFLKNVNPGVFRAGAEV 1080
            A LYGTNFG +K+++E++  S+AA LRF++AL    PFLK V   + + G E+
Sbjct:    3 AALYGTNFGSIKIMQEALDPSVAAILRFTLALAALSPFLKTVPRDMIKPGVEI 55
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BLAST of mRNA_Ecto-sp13_S_contig12800.2317.1 vs. uniprot
Match: A0A7S1H6Z0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H6Z0_HEMAN)

HSP 1 Score: 56.2 bits (134), Expect = 4.350e-5
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:  889 LWTSRAMLAGAAMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPFLPFLKNVNPGVFRAGAEV 1080
            LWT+R ++   AM+ GTNF  + LLE +V  SLA+ALRF +A V  +P L+ V       G E+
Sbjct:  124 LWTARGIVLLMAMICGTNFPSIGLLEATVEPSLASALRFGLASVALIPMLRGVRQEAILPGLEI 187
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BLAST of mRNA_Ecto-sp13_S_contig12800.2317.1 vs. uniprot
Match: A0A835Z0F0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.280e-5
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  880 EDG-LWTSRAMLAGAAMLYGTNFGCVKLLEES-VPMSLAAALRFSVALVPFLPFLKNVNPGVFRAGAE 1077
            EDG  W  R +LA  A+L+GTNFG VK ++ + +  S+AA  RF +A V   PFL   +  VF+AG E
Sbjct:   43 EDGNYWAYRGLLALVAVLWGTNFGTVKFVQNADISASVAALSRFGIAAVAMSPFLFKGDKAVFKAGFE 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12800.2317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FVY2_ECTSI8.800e-14085.12EamA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S0THX4_HEMAN9.200e-952.31Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A835ZPH7_9STRA2.130e-749.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0DWX9_9CRYP2.570e-644.26Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S2UPB2_9STRA9.400e-650.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
L1IX33_GUITC1.630e-547.17EamA domain-containing protein n=1 Tax=Guillardia ... [more]
A0A7S1H6Z0_HEMAN4.350e-543.75Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A835Z0F0_9STRA6.280e-545.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12800contigEcto-sp13_S_contig12800:563..2041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score426.0
Seed ortholog evalue1.7e-116
Seed eggNOG ortholog2880.D7FVY2
Model size1080
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.EamA-like transporter family
EggNOG OGs2S0YE@2759,COG0697@1
Ec32 ortholog descriptionEamA domain
Ec32 orthologEc-01_002600.1
Cds size1080
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.1358037-CDS-Ecto-sp13_S_contig12800:562..16081681462685.1358037-CDS-Ecto-sp13_S_contig12800:562..1608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12800 563..1608 -
1681462685.1698296-CDS-Ecto-sp13_S_contig12800:2007..20411681462685.1698296-CDS-Ecto-sp13_S_contig12800:2007..2041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12800 2008..2041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12800.2317.1prot_Ecto-sp13_S_contig12800.2317.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12800 563..2041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12800.2317.1

>prot_Ecto-sp13_S_contig12800.2317.1 ID=prot_Ecto-sp13_S_contig12800.2317.1|Name=mRNA_Ecto-sp13_S_contig12800.2317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
MRSPGVTPVLFGACLASTRVRECSCFTASLRVSTGRPAAAAAPASLWRSN
KMNSTKNSSGRPARFSPVRTATARGRPSSTASSPTAAAAALGDGSGDVSS
SSSSSSSQGKPSSFKGDESTTQRRRRRRQRRPTLLAGGRGSPSTAEQQQP
QPPRVDAEGSMTTSQQLSAEVSARRSRSRAWRLVGFPPVGYYDGDTKGLT
SSSSSSSPLVGEDTAAGTTAADATDSALRGRYREEHRDWQEKLERLVDMS
EPPPELLAAAETRSIGDIIMPPRPPATKSLEEEGQQQQQQGGAEDGLWTS
RAMLAGAAMLYGTNFGCVKLLEESVPMSLAAALRFSVALVPFLPFLKNVN
PGVFRAGAEV
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mRNA from alignment at Ecto-sp13_S_contig12800:563..2041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12800.2317.1 ID=mRNA_Ecto-sp13_S_contig12800.2317.1|Name=mRNA_Ecto-sp13_S_contig12800.2317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12800:563..2041- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGAGCCCAGGAGTCACGCCGGTGCTGTTTGGTAAGCTAGCTCTCTC
CCGGTCCGGCTGCTTTTGTAGGTAGCTTTTGTAGGTAGACATCCGAGATA
AGAGACGTGGATGAAATTTCGCCGCCGCTGCCGCCACTACGTGTTGGCCG
CCTCGCTCCCACCCCCCTGCTCCCCCCGCCCGACTTAACGCGCTGCCTAC
CACCGCCATGCGCACGGTTCTTGGTCAGATGCAATATTCCAGCTGAAAAC
GGGAGTCAAGGTTGACCACAGCGGCAGTAAAGTCGTCCGTTTGATCGATG
ATGCATGATTTGATTTCTTCTGTGGTGGATCTTTGTTACAAGTTACAAGA
GAGAGAGAGAGAGCGGACTGGCTGGGTATTTAGTCAGACAGCACCATCGC
CGACCGCCCCCCCCCGAACTCCTCTCGATCCAGGCGCTTGCCTAGCGTCC
ACAAGGGTGCGAGAGTGCTCCTGCTTTACGGCGAGCCTCCGCGTGAGCAC
GGGACGGCCAGCCGCAGCGGCAGCACCAGCATCTCTATGGCGGTCTAACA
AGATGAACAGCACGAAGAACAGCAGCGGTAGGCCGGCTCGATTCTCACCG
GTACGAACGGCGACGGCGAGAGGCCGGCCGTCCTCCACCGCATCCTCCCC
GACCGCGGCAGCTGCAGCACTAGGTGACGGTAGCGGCGATGTCAGCAGCA
GCAGCAGCAGCAGCAGCAGCCAGGGGAAACCGTCCTCCTTCAAGGGCGAT
GAGTCCACCACGCAACGTCGCCGGCGCCGGCGCCAGAGGCGACCAACACT
TCTCGCAGGCGGCAGGGGGAGCCCGAGCACTGCCGAGCAACAGCAGCCGC
AGCCGCCACGGGTTGATGCGGAGGGGTCGATGACGACCAGCCAGCAGCTC
AGCGCGGAGGTCTCGGCGCGCAGGAGCAGGTCGCGGGCGTGGAGGCTGGT
CGGCTTCCCGCCAGTAGGCTACTACGACGGCGACACCAAGGGGCTGACCT
CCTCCTCCTCCTCCTCCTCCCCCTTGGTTGGAGAGGACACCGCCGCCGGC
ACGACGGCGGCGGATGCGACGGACAGCGCCCTGAGGGGGCGGTACCGTGA
GGAGCACAGGGACTGGCAGGAAAAGCTCGAGCGCCTCGTGGACATGTCGG
AGCCGCCGCCGGAGCTGCTGGCGGCGGCGGAGACAAGGTCCATCGGCGAC
ATAATCATGCCGCCCCGCCCCCCCGCCACCAAGTCCTTGGAGGAGGAGGG
GCAACAACAACAACAACAAGGGGGAGCAGAAGACGGCTTGTGGACGTCGA
GGGCGATGCTGGCAGGGGCGGCCATGCTGTACGGAACCAACTTCGGCTGC
GTGAAGCTGCTCGAGGAGTCGGTGCCCATGTCCCTGGCGGCGGCGCTTAG
GTTCTCGGTTGCGCTGGTGCCGTTCTTGCCATTCCTCAAGAACGTCAACC
CGGGGGTGTTCCGGGCGGGTGCGGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12800:563..2041-

>mRNA_Ecto-sp13_S_contig12800.2317.1 ID=mRNA_Ecto-sp13_S_contig12800.2317.1|Name=mRNA_Ecto-sp13_S_contig12800.2317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12800:563..2041- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGAGCCCAGGAGTCACGCCGGTGCTGTTTGGCGCTTGCCTAGCGTC
CACAAGGGTGCGAGAGTGCTCCTGCTTTACGGCGAGCCTCCGCGTGAGCA
CGGGACGGCCAGCCGCAGCGGCAGCACCAGCATCTCTATGGCGGTCTAAC
AAGATGAACAGCACGAAGAACAGCAGCGGTAGGCCGGCTCGATTCTCACC
GGTACGAACGGCGACGGCGAGAGGCCGGCCGTCCTCCACCGCATCCTCCC
CGACCGCGGCAGCTGCAGCACTAGGTGACGGTAGCGGCGATGTCAGCAGC
AGCAGCAGCAGCAGCAGCAGCCAGGGGAAACCGTCCTCCTTCAAGGGCGA
TGAGTCCACCACGCAACGTCGCCGGCGCCGGCGCCAGAGGCGACCAACAC
TTCTCGCAGGCGGCAGGGGGAGCCCGAGCACTGCCGAGCAACAGCAGCCG
CAGCCGCCACGGGTTGATGCGGAGGGGTCGATGACGACCAGCCAGCAGCT
CAGCGCGGAGGTCTCGGCGCGCAGGAGCAGGTCGCGGGCGTGGAGGCTGG
TCGGCTTCCCGCCAGTAGGCTACTACGACGGCGACACCAAGGGGCTGACC
TCCTCCTCCTCCTCCTCCTCCCCCTTGGTTGGAGAGGACACCGCCGCCGG
CACGACGGCGGCGGATGCGACGGACAGCGCCCTGAGGGGGCGGTACCGTG
AGGAGCACAGGGACTGGCAGGAAAAGCTCGAGCGCCTCGTGGACATGTCG
GAGCCGCCGCCGGAGCTGCTGGCGGCGGCGGAGACAAGGTCCATCGGCGA
CATAATCATGCCGCCCCGCCCCCCCGCCACCAAGTCCTTGGAGGAGGAGG
GGCAACAACAACAACAACAAGGGGGAGCAGAAGACGGCTTGTGGACGTCG
AGGGCGATGCTGGCAGGGGCGGCCATGCTGTACGGAACCAACTTCGGCTG
CGTGAAGCTGCTCGAGGAGTCGGTGCCCATGTCCCTGGCGGCGGCGCTTA
GGTTCTCGGTTGCGCTGGTGCCGTTCTTGCCATTCCTCAAGAACGTCAAC
CCGGGGGTGTTCCGGGCGGGTGCGGAGGTG
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