mRNA_Ecto-sp13_S_contig1280.2316.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1280.2316.1
Unique NamemRNA_Ecto-sp13_S_contig1280.2316.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1280.2316.1 vs. uniprot
Match: D7FK07_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK07_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 1.000e-123
Identity = 258/312 (82.69%), Postives = 265/312 (84.94%), Query Frame = 1 
Query:    1 EEPLELTRCSECHRRVGDRRCKSCEADLCDSCQVFTHARTCHRAEEKGRKGSSTAGGGNSGKHAPKRASSCGAVGCGGRHPAVTKRQKRETDEVFASITLEGTELKGDLRTLYALDRILGVVEDSSEDTATTEAGAAKXXXXRKGGENETDTKEEGEEDKEKGEVEKEEIDEMPLVCDVCGKTPDVECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRGYTHAKDLLNRAKRKEXXXXXXXXXXXXQNGEARRDEKADKKRRLKLAQERELARXXXXXXXXXXXXXXXXXXRKVRAAGLNPYLLPRLR 936
            EEPLEL RCSECHRRVGDRRC+SCE DLCDSCQ FTHARTC  A E+GRKGSSTAGG +SGKHAPKRASS GAVGCGGRHPAVTKRQKRETDE+FAS+TLEGTELKGDLRTLYALDRILGVVEDSSEDTA        XXXX                          EIDEMPLVCDVCGKTPDVECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRGYTHAKDLL RAKRK XXXXXXXXXXXXQNGEARRDEKA++KRRLKLAQERELARXXXXXXXXXXXXXXXXXX K RAAGLNP LLPRLR
Sbjct: 3582 EEPLELPRCSECHRRVGDRRCESCEVDLCDSCQAFTHARTCPHANEEGRKGSSTAGGDHSGKHAPKRASSSGAVGCGGRHPAVTKRQKRETDEIFASLTLEGTELKGDLRTLYALDRILGVVEDSSEDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIDEMPLVCDVCGKTPDVECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRGYTHAKDLLKRAKRKXXXXXXXXXXXXXQNGEARRDEKANRKRRLKLAQERELARXXXXXXXXXXXXXXXXXXXKARAAGLNPSLLPRLR 3893
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BLAST of mRNA_Ecto-sp13_S_contig1280.2316.1 vs. uniprot
Match: A0A6H5KMU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU5_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.850e-49
Identity = 98/103 (95.15%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:  517 MPLVCDVCGKTPDVECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRGYTHAKDLLNRAKRKEXXXXXXXXXXXXQNGEARRDEKADKKRRLKLAQEREL 825
            MPLVCDVCGKTPDVECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRGYTHAKDLL RAK   XXXXXXXXXXXXQNGEARRDEKADKKRRLKLAQERE+
Sbjct:    1 MPLVCDVCGKTPDVECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRGYTHAKDLLKRAKXXXXXXXXXXXXXXXQNGEARRDEKADKKRRLKLAQEREV 103
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BLAST of mRNA_Ecto-sp13_S_contig1280.2316.1 vs. uniprot
Match: A0A7S4MK78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MK78_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.890e-8
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  550 PDVECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRGYTHAKDLLNRAKRKE 714
            PDV C ECG VYCS TW+GNPGCF + H RGNR  H+ + + + ++ +N  + +E
Sbjct:   68 PDVRCRECGDVYCSITWLGNPGCFRQMHSRGNRTTHSAKPWPNVQNRVNEIREEE 122
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BLAST of mRNA_Ecto-sp13_S_contig1280.2316.1 vs. uniprot
Match: A0A7S2NUD7_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUD7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.660e-8
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:  517 MPLVCDVCGKTPDVECEECGTVYCSNTWVGNPGCFIRDHERGNRRKH 657
             P  C VC   PD  CE+CG VYCS TW+GNPGCF + H +G R  H
Sbjct:  660 FPPTCSVCANPPDKLCEDCGEVYCSATWIGNPGCFRKMHVKGERLHH 706
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BLAST of mRNA_Ecto-sp13_S_contig1280.2316.1 vs. uniprot
Match: A0A7S2CNG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNG6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.240e-6
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  580 VYCSNTWVGNPGCFIRDHERGNRRKHTKRGYTHAKDL 690
            VYCS  W+GNPGCF + H +GNRR HTK  YT+ ++L
Sbjct:   72 VYCSVKWMGNPGCFAKQHRKGNRRTHTKEPYTYMEEL 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1280.2316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FK07_ECTSI1.000e-12382.69Calmodulin-binding WW domain protein n=1 Tax=Ectoc... [more]
A0A6H5KMU5_9PHAE2.850e-4995.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4MK78_9STRA1.890e-849.09Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2NUD7_9STRA9.660e-855.32Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2CNG6_9STRA9.240e-659.46Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1280contigEcto-sp13_S_contig1280:4763..8184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score414.5
Seed ortholog evalue4.7e-113
Seed eggNOG ortholog2880.D7FK07
Model size1547
Hectar predicted targeting categoryother localisation
Exons7
EggNOG OGs28ZVB@1,2R6Q0@2759
Cds size969
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1280.2316.1prot_Ecto-sp13_S_contig1280.2316.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1280 4763..7606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.041554-CDS-Ecto-sp13_S_contig1280:4762..48791681462685.041554-CDS-Ecto-sp13_S_contig1280:4762..4879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1280 4763..4879 +
1681462685.0520983-CDS-Ecto-sp13_S_contig1280:5123..53181681462685.0520983-CDS-Ecto-sp13_S_contig1280:5123..5318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1280 5124..5318 +
1681462685.0614178-CDS-Ecto-sp13_S_contig1280:5883..61321681462685.0614178-CDS-Ecto-sp13_S_contig1280:5883..6132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1280 5884..6132 +
1681462685.0713372-CDS-Ecto-sp13_S_contig1280:6416..65231681462685.0713372-CDS-Ecto-sp13_S_contig1280:6416..6523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1280 6417..6523 +
1681462685.081079-CDS-Ecto-sp13_S_contig1280:7007..71611681462685.081079-CDS-Ecto-sp13_S_contig1280:7007..7161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1280 7008..7161 +
1681462685.090212-CDS-Ecto-sp13_S_contig1280:7398..75131681462685.090212-CDS-Ecto-sp13_S_contig1280:7398..7513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1280 7399..7513 +
1681462685.098375-CDS-Ecto-sp13_S_contig1280:7574..76061681462685.098375-CDS-Ecto-sp13_S_contig1280:7574..7606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1280 7575..7606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.1066914-UTR-Ecto-sp13_S_contig1280:7606..81841681462685.1066914-UTR-Ecto-sp13_S_contig1280:7606..8184Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1280 7607..8184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1280.2316.1

>prot_Ecto-sp13_S_contig1280.2316.1 ID=prot_Ecto-sp13_S_contig1280.2316.1|Name=mRNA_Ecto-sp13_S_contig1280.2316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
EEPLELTRCSECHRRVGDRRCKSCEADLCDSCQVFTHARTCHRAEEKGRK
GSSTAGGGNSGKHAPKRASSCGAVGCGGRHPAVTKRQKRETDEVFASITL
EGTELKGDLRTLYALDRILGVVEDSSEDTATTEAGAAKQQKKRKGGENET
DTKEEGEEDKEKGEVEKEEIDEMPLVCDVCGKTPDVECEECGTVYCSNTW
VGNPGCFIRDHERGNRRKHTKRGYTHAKDLLNRAKRKEKEEKERKERESR
QNGEARRDEKADKKRRLKLAQERELARELRLQKEAKKELKRRIRRRKVRA
AGLNPYLLPRLRAPFEYLRALR*
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mRNA from alignment at Ecto-sp13_S_contig1280:4763..8184+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1280.2316.1 ID=mRNA_Ecto-sp13_S_contig1280.2316.1|Name=mRNA_Ecto-sp13_S_contig1280.2316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3422bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1280:4763..8184+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGCCGTTGGAGCTAACCCGGTGCAGTGAATGCCATCGTAGGGTGGG
CGACAGGCGGTGTAAGAGCTGCGAGGCAGACCTGTGCGACTCGTGCCAGG
TCTTCACACATGCAAGGGTGAGAGAGAACGGGCGAACTTGGTTTTGAGGG
GGCCTTCTTGTGCAATACAGGAAAAAGGACGAGTGTGTGGACGCATTAAC
GAGGGGGGGCTCCCGTACATCAGCGGCTTGCCGCCTCTTCCCACTTTACC
TAACTGTACTTCGGACGCCACGAAGCCCTCAATCAGACGCACACCTGATT
CATTTTTGAGTGCGCATTTCGGTCCTTGCGTTCTGTGTGCTGCTCGACGA
CCCGTGAGCAGACATGCCATCGCGCCGAGGAAAAAGGGCGTAAGGGCTCC
TCAACAGCTGGCGGCGGCAACAGCGGGAAGCACGCGCCCAAGAGAGCTTC
GTCTTGCGGGGCCGTCGGATGCGGGGGTCGTCACCCGGCGGTCACGAAGC
GACAGAAGAGGGAGACGGATGAAGTGTTTGCCTCCATCACCCTGGAAGGG
ACAGAGGTAAAAAAAAAAAAAGCTGATTCTTGCGCGCGTGCAAGGGCGTG
TTCGGCCCAAAAGACAGCTTTCTTCGCGTTTGTTTTTGGAGTCTGCCATT
TGCCAATGACATGATACACGTAGGCCTTTTGCAAATGTGGCCGTGCACTC
TGCGCAACCAGCTTTTCGGGATCATGCAACCAAACAATGTGTTTCTTGGT
TTGACTATCTTCTCCGTGTACTGTCGTCACCTTCACGCTTTCGTTCTCTC
GACTGCTGAACTGAAAAACCCGGAGGAAACAAAGCACAACAATACGCGTT
CCCTCCTTCCCTTCCTTCTGGCCTCGCGTGATGGTCGGCTCGCTGGTGTC
TAGTAGCTCCGATCGATGGGACGTACAGCCTTATTGATCCAGCAAAAAGA
ACGTGTGTCCGCGCTTCCGCTCATGGCCCCTCATTGCATGCCTGCTCCCC
TCCCCACCCACCTACCTGTTCCTGGTTGCCTGCCGATCGACCTGCGTTCC
TGTCTACATCACTTCGGTTGATCTGACGAAAAAACAACACGATTCCATCC
GGAAAAAAAAAAACACGAAAGCTGAAAGGAGACCTCAGAACGTTGTACGC
CCTTGACCGAATCCTGGGAGTAGTTGAAGATTCTTCCGAAGACACAGCTA
CAACAGAAGCAGGGGCAGCCAAGCAACAGAAGAAGAGGAAGGGGGGTGAA
AATGAAACGGATACAAAAGAGGAGGGTGAAGAAGACAAGGAGAAGGGGGA
GGTGGAGAAGGAGGAGATAGACGAGATGCCGCTGGTTTGTGATGTATGCG
GGAAAACTCCGGACGTCGAAGTGAGTGCTCGAACAGAATGGGGGCTCGGT
TCGAGAGAGACGACCGACAGGGCGCGTCGTTAACGTTGATGACCACTGCT
ATTGCGTACCAGTACCCGTGTTTTTATTGCAGTCAATTTAACATCGCCCA
AATATGCGCTGCAATGGTTTGAAGCATGAGGTCTCGGACCCGTGTTTTGG
ATCACTGCTCGGCGGCTATCAAATGCCGCTACTGTAGTCTCCTCTTTGTT
TCGGTTTGGGAAACACGTTTCGCTCCCGCACCCCTGTTTTGTTTTCGTTT
TCAGTGCGAGGAATGCGGCACCGTGTACTGCTCCAACACCTGGGTCGGCA
ACCCTGGGTGCTTCATCAGGGATCACGAGCGGGGGAATCGCCGCAAGCAC
ACCAAACGCGGGTAAGCCCAGCGCCGTGGAGGGTGCTGTTCCAAATAGGG
CGCAACATAAAACAATACACCTACCCTATCGGGAGGAGAGGTTACTGAAA
ATCAGACCTGGTGGACGAAAAAGAAACATTGCAACATCGCAGGGAACACG
AAAGCACCCGGTCCTTCGCATGCGCCACACGTGTTTCAGAAGTGTGACCA
AGGCACATGTTTCGGTTTAGATTGGTGATGCGCTGAAGTAGGTCTGTGGC
GTCTAACCGTGGCCTTAGCCAAAGAGACCACGCGAGGCTGCCGAGAAAAT
TTCTCCTCTTTGTTTCCTCCCTACCTGTCTCTTCAAACTTCCTGGATCGC
ACAAGTTGAAGTCGCGCCGACGAGATAATGGAGGTGTGAGTTGAAAAGTT
GGGTACGCCGTAGGGCACAACGACATCGAGCATGGGAATGGATTGGCAGG
ATATTGTGCTGACTTGGTCTTCCTCTCCCGTCTATGTCAACGCAGATACA
CGCACGCGAAGGACTTGTTGAACAGGGCAAAGAGAAAGGAGAAGGAGGAG
AAGGAGCGAAAAGAGCGGGAAAGTCGCCAGAACGGGGAGGCCCGCCGGGA
CGAAAAGGCCGACAAAAAGCGGCGCCTGAAACTGGCTCAAGAACGCGAGG
TGAGCACCGGCTCCGTCGTAATAAAAGAGCTATCGTACGTTGGCTCAGAA
ACCGCTCTCACCTGTTCGTAGCAAGAGTAAAGTCCACTTCGACCGGCTGA
CGCTCCCCGCCCCGCCATGACTTTCCTGGGTCTCGGAAAAGCACGGCGTA
GTCTGGACAACCATTTCAGCGTTGTTGATTTGGCGCGCGATTTTTGCCGG
TGCTCTCCCGTTCTACAATTCGCCCCAACCCAACAGTTGGCGCGCGAGCT
GAGGCTTCAAAAAGAGGCCAAGAAGGAGCTGAAACGACGGATTCGTCGTC
GCAAGGTCCGGGCGGCGGGCCTCAACCCTTACCTGCTCCCCAGACTCAGG
GTCAAAGCAACGGAGTTTGCAAACAAGCGAGGCTTTTTCTTGTCACAACA
CCCGAGTTTTCTCTCCGTTCGAATACCTCCGGGCATTGCGATGACCACTC
GTAGACTAGTGGATACCCTCCGGGGGCATGGAAGGGAGGGAAGAAGGGAT
TATGATACTATTGGTGATGGTGACGGTAGGGGTAATAGGAGTCCGAAGGG
AACGGCGGGAGACCGAAGCAGAAGTAGGACCAGAAGCCCGGCCAAGAAAA
GGCATCGAAAACACCTGAAATGACCTTGAACAGTGAGTTTGTGTGTGGAT
ACTGACCGCGTTGCCGCGGAAGCGGCGAAGAGGGCTAGTCGTAAAACAAT
AGCTGTGACGTCCACAACGCACCCGTTCTGCGAGCAGGGCCTGATGCCCG
GTGGAAGGGCGTTGTGTAGCAAAGAGGTTTTCGGACTCTTAGGACTCGCT
TTGGCTTGAGTATAGGAGGTGAAAATACGACCGGCGGTTCGTTTGTTATA
GTTTTGGGTTCCGGTTCTTTTATCATTTGTGTTTATCGTTTTCTTAGTCG
TGCGTTATGATTGTACTTCAAGGGTTTAGTTGGTGACATTCCCTGTAATT
TGAGTTCCTATTCGCTTGATTAGCCGCGGCGAACCAATTTCATGCCAGAA
CAAGCAAGCATCAGCAACCAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1280:4763..8184+

>mRNA_Ecto-sp13_S_contig1280.2316.1 ID=mRNA_Ecto-sp13_S_contig1280.2316.1|Name=mRNA_Ecto-sp13_S_contig1280.2316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1280:4763..8184+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGCCGTTGGAGCTAACCCGGTGCAGTGAATGCCATCGTAGGGTGGG
CGACAGGCGGTGTAAGAGCTGCGAGGCAGACCTGTGCGACTCGTGCCAGG
TCTTCACACATGCAAGGACATGCCATCGCGCCGAGGAAAAAGGGCGTAAG
GGCTCCTCAACAGCTGGCGGCGGCAACAGCGGGAAGCACGCGCCCAAGAG
AGCTTCGTCTTGCGGGGCCGTCGGATGCGGGGGTCGTCACCCGGCGGTCA
CGAAGCGACAGAAGAGGGAGACGGATGAAGTGTTTGCCTCCATCACCCTG
GAAGGGACAGAGCTGAAAGGAGACCTCAGAACGTTGTACGCCCTTGACCG
AATCCTGGGAGTAGTTGAAGATTCTTCCGAAGACACAGCTACAACAGAAG
CAGGGGCAGCCAAGCAACAGAAGAAGAGGAAGGGGGGTGAAAATGAAACG
GATACAAAAGAGGAGGGTGAAGAAGACAAGGAGAAGGGGGAGGTGGAGAA
GGAGGAGATAGACGAGATGCCGCTGGTTTGTGATGTATGCGGGAAAACTC
CGGACGTCGAATGCGAGGAATGCGGCACCGTGTACTGCTCCAACACCTGG
GTCGGCAACCCTGGGTGCTTCATCAGGGATCACGAGCGGGGGAATCGCCG
CAAGCACACCAAACGCGGATACACGCACGCGAAGGACTTGTTGAACAGGG
CAAAGAGAAAGGAGAAGGAGGAGAAGGAGCGAAAAGAGCGGGAAAGTCGC
CAGAACGGGGAGGCCCGCCGGGACGAAAAGGCCGACAAAAAGCGGCGCCT
GAAACTGGCTCAAGAACGCGAGTTGGCGCGCGAGCTGAGGCTTCAAAAAG
AGGCCAAGAAGGAGCTGAAACGACGGATTCGTCGTCGCAAGGTCCGGGCG
GCGGGCCTCAACCCTTACCTGCTCCCCAGACTCAGGGCTCCGTTCGAATA
CCTCCGGGCATTGCGATGA
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