mRNA_Ecto-sp13_S_contig128.2312.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig128.2312.1
Unique NamemRNA_Ecto-sp13_S_contig128.2312.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig128.2312.1 vs. uniprot
Match: D7FZM7_ECTSI (Homogentisate 1,2-dioxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM7_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 7.750e-26
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:   82 MENPLVASVEVTARLAALTDATQHIFFASVCTGWSNACK*HLLLATSTTGPKQQPSRVDNN 264
            MENPLVAS+ VTARLAALTDATQ +FFASVCTGWSNA K HLLLATSTT PKQQPSRVDNN
Sbjct:    1 MENPLVASMAVTARLAALTDATQRLFFASVCTGWSNAWKQHLLLATSTTDPKQQPSRVDNN 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig128.2312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZM7_ECTSI7.750e-2688.52Homogentisate 1,2-dioxygenase n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig128contigEcto-sp13_S_contig128:28413..28676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score72.4
Seed ortholog evalue9e-11
Seed eggNOG ortholog2880.D7FZM7
Preferred nameHGD
Model size264
KEGG rclassRC00737
KEGG koko:K00451
KEGG ReactionR02519
KEGG Pathwayko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120
KEGG ModuleM00044
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004411,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006558,GO:0006559,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0017144,GO:0018958,GO:0019336,GO:0019439,GO:0019752,GO:0032787,GO:0042737,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0051213,GO:0055114,GO:0071704,GO:0072329,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901615,GO:1901616,GO:1901999,GO:1902000,GO:1902221,GO:1902222
Exons1
EggNOG free text desc.homogentisate 1,2-dioxygenase activity
EggNOG OGsCOG3508@1,KOG1417@2759
EC1.13.11.5
Cds size201
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462684.783662-CDS-Ecto-sp13_S_contig128:28412..286131681462684.783662-CDS-Ecto-sp13_S_contig128:28412..28613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig128 28413..28613 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462684.7963839-UTR-Ecto-sp13_S_contig128:28613..286761681462684.7963839-UTR-Ecto-sp13_S_contig128:28613..28676Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig128 28614..28676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig128.2312.1prot_Ecto-sp13_S_contig128.2312.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig128 28413..28613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig128.2312.1

>prot_Ecto-sp13_S_contig128.2312.1 ID=prot_Ecto-sp13_S_contig128.2312.1|Name=mRNA_Ecto-sp13_S_contig128.2312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MYNNTNTTILRPFCLGNAHRGNLTGLRMENPLVASVEVTARLAALTDATQ
HIFFASVCTGWSNACK*
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mRNA from alignment at Ecto-sp13_S_contig128:28413..28676+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig128.2312.1 ID=mRNA_Ecto-sp13_S_contig128.2312.1|Name=mRNA_Ecto-sp13_S_contig128.2312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig128:28413..28676+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAACAACACCAACACCACCATCCTCCGCCCTTTCTGCCTGGGGAA
CGCACATCGCGGAAACTTGACGGGTCTTCGCATGGAGAACCCTCTGGTCG
CAAGCGTGGAAGTGACCGCACGCCTGGCAGCGCTGACGGACGCCACACAA
CACATCTTCTTCGCCTCAGTGTGCACGGGATGGAGCAATGCCTGCAAGTA
ACACCTCCTATTAGCGACCTCGACTACTGGCCCGAAACAACAGCCGTCTC
GTGTTGACAACAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig128:28413..28676+

>mRNA_Ecto-sp13_S_contig128.2312.1 ID=mRNA_Ecto-sp13_S_contig128.2312.1|Name=mRNA_Ecto-sp13_S_contig128.2312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig128:28413..28676+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAACAACACCAACACCACCATCCTCCGCCCTTTCTGCCTGGGGAA
CGCACATCGCGGAAACTTGACGGGTCTTCGCATGGAGAACCCTCTGGTCG
CAAGCGTGGAAGTGACCGCACGCCTGGCAGCGCTGACGGACGCCACACAA
CACATCTTCTTCGCCTCAGTGTGCACGGGATGGAGCAATGCCTGCAAGTA
A
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