mRNA_Ecto-sp13_S_contig12792.2308.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12792.2308.1
Unique NamemRNA_Ecto-sp13_S_contig12792.2308.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12792.2308.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.970e-23
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   70 IEGEMDPRPATR-MRKSCCACGRKKKKCDGFMPCRRCVDSGSRCVYEKRRCHLPLAHHEQ 246
            ++G M+P PAT  MR+SC  CGRKK+KCDG MPCRRCVDSGSRCVYEKRRCHLP AHHEQ
Sbjct:    1 MKGGMEPTPATLGMRRSCSECGRKKRKCDGLMPCRRCVDSGSRCVYEKRRCHLPRAHHEQ 60
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BLAST of mRNA_Ecto-sp13_S_contig12792.2308.1 vs. uniprot
Match: D8LU21_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU21_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.530e-12
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  106 MRKSCCACGRKKKKCDGFMPCRRCVDSGSRCVYEKRRCHLP 228
            MRKSCCACGRKK+KCDG MPC RC+ +G RC Y KR+ H P
Sbjct:   18 MRKSCCACGRKKRKCDGLMPCSRCLGAGVRCTYRKRKPHQP 58
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BLAST of mRNA_Ecto-sp13_S_contig12792.2308.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.420e-10
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:  106 MRKSCCACGRKKKKCDGFMPCRRCVDSGSRCVYEKRRCHLPLAHHE 243
            MR+SCC CGRKK+KCDG  PC RC+ SG +C Y KR+ H P   H+
Sbjct:   18 MRRSCCECGRKKRKCDGMAPCSRCLRSGVQCTYSKRKPHQPQTQHQ 63
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BLAST of mRNA_Ecto-sp13_S_contig12792.2308.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.970e-10
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  106 MRKSCCACGRKKKKCDGFMPCRRCVDSGSRCVYEKRRCHLP 228
            MRKSC ACGRKK+KCDG MPC RC+ +G RC Y KR+ H P
Sbjct:   18 MRKSCGACGRKKRKCDGLMPCSRCLRAGVRCTYSKRKPHQP 58
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BLAST of mRNA_Ecto-sp13_S_contig12792.2308.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.770e-10
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  106 MRKSCCACGRKKKKCDGFMPCRRCVDSGSRCVYEKRRCHLPLAHHEQ 246
            MR+SC  CGRKKK+CDG  PCRRCV SG +C Y  RR HL   H +Q
Sbjct:   29 MRRSCTECGRKKKRCDGQQPCRRCVGSGGQCAYIMRRWHLLKPHQQQ 75
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BLAST of mRNA_Ecto-sp13_S_contig12792.2308.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.970e-9
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  106 MRKSCCACGRKKKKCDGFMPCRRCVDSGSRCVYEKRRCHLPLAH 237
            +R+SC  CGRKKK+CDG  PCRRCV SGS+C Y KRR  L   H
Sbjct:   28 IRRSCSECGRKKKRCDGQRPCRRCVRSGSQCTYSKRRRRLLQTH 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12792.2308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JZG3_9PHAE1.970e-2378.33Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU21_ECTSI8.530e-1270.73Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JBJ1_9PHAE1.420e-1058.70Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5K8E7_9PHAE4.970e-1068.29Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JYW4_9PHAE6.770e-1061.70Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU16_ECTSI5.970e-963.64Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12792contigEcto-sp13_S_contig12792:3282..3843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size248
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462684.29224-CDS-Ecto-sp13_S_contig12792:3283..33591681462684.29224-CDS-Ecto-sp13_S_contig12792:3283..3359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12792 3284..3359 -
1681462684.3033075-CDS-Ecto-sp13_S_contig12792:3673..38431681462684.3033075-CDS-Ecto-sp13_S_contig12792:3673..3843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12792 3674..3843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12792.2308.1prot_Ecto-sp13_S_contig12792.2308.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12792 3284..3843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12792.2308.1

>prot_Ecto-sp13_S_contig12792.2308.1 ID=prot_Ecto-sp13_S_contig12792.2308.1|Name=mRNA_Ecto-sp13_S_contig12792.2308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
VLKHGGIYERAEHHAEAARPYWVIEGEMDPRPATRMRKSCCACGRKKKKC
DGFMPCRRCVDSGSRCVYEKRRCHLPLAHHEQ
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mRNA from alignment at Ecto-sp13_S_contig12792:3282..3843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12792.2308.1 ID=mRNA_Ecto-sp13_S_contig12792.2308.1|Name=mRNA_Ecto-sp13_S_contig12792.2308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12792:3282..3843- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTGAAACACGGCGGCATATACGAACGGGCGGAGCATCACGCCGAGGC
TGCCCGCCCTTATTGGGTAATAGAGGGAGAAATGGACCCCAGGCCAGCGA
CCAGGATGCGTAAGAGCTGCTGTGCGTGCGGGCGAAAGAAGAAGAAGTGC
GATGGCTTCATGCCGTGCAGGTGTGTGGCTTTTGCCTGTCATGGGGTCTA
CGAAGTCGAAACTTGGCGATCTGGCGGCGTTTGACAGGGTACGGTATGTA
GACTAACCCTTACTCTCTTTGACAGCAGCAGCAGTACTGACCTGTAAGGT
GCGTGCACCAATAATTAACCGCTGTCCTGTTGGTTTTTGTTTTTTTGACA
CACGTTCCCTCGTAAGACCTACTATACCTCTGTGTTTGAGAAGGATGTAC
ACAGCAGTCCACGCTTTCCTGTGCGCTGCTGCGGCCCCTCTACTTGGAAA
ACATGCGTTGTGTGTCGTCCCTCGGAGGTTGTAGACGGTGCGTTGATTCA
GGCAGCCGTTGCGTGTACGAGAAGCGGCGGTGTCATCTCCCTCTAGCACA
CCACGAGCAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12792:3282..3843-

>mRNA_Ecto-sp13_S_contig12792.2308.1 ID=mRNA_Ecto-sp13_S_contig12792.2308.1|Name=mRNA_Ecto-sp13_S_contig12792.2308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12792:3282..3843- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTGAAACACGGCGGCATATACGAACGGGCGGAGCATCACGCCGAGGC
TGCCCGCCCTTATTGGGTAATAGAGGGAGAAATGGACCCCAGGCCAGCGA
CCAGGATGCGTAAGAGCTGCTGTGCGTGCGGGCGAAAGAAGAAGAAGTGC
GATGGCTTCATGCCGTGCAGACGGTGCGTTGATTCAGGCAGCCGTTGCGT
GTACGAGAAGCGGCGGTGTCATCTCCCTCTAGCACACCACGAGCAG
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