mRNA_Ecto-sp13_S_contig12783.2302.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12783.2302.1
Unique NamemRNA_Ecto-sp13_S_contig12783.2302.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: D7FVB5_ECTSI (Protein phosphatase type 2A regulator/ signal transducer n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVB5_ECTSI)

HSP 1 Score: 1310 bits (3391), Expect = 0.000e+0
Identity = 694/742 (93.53%), Postives = 709/742 (95.55%), Query Frame = 2
Query:  215 MPPLPAKKSPGTSDAASSNLAKQPPALSPRAVSSLKPDTDDGATFESFLSYKPSQGEDTLAVYEAVNDPSKWLLKNKETGQEVEATAFADTLLARRPAPQWATVSPRLGSHSQGSRGWPRLQRQKAPAFQRPTLLPPSNGDIAFFPPASAGPLTPPFLQLGFSSLSGRSSPLRFGARSPVSGQSFSRPRSGSNSHGRSNSDSTASSAILSVDASPSFKLRNMSTTQLLPRLHHGGVRAMSFSPSGAFLATCGMDRRCCVFRVQRRRQTTALRAGSPNAAAAAVSLSVDRGMSRQPNSDSVEGRLIDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELTVECRRHGFRHSAAQRTRLATSPVRRLSVGTGDGRSNGAGGDRVXXXXXXXXXXXXXXXXXXXXXNTLGSRAGARVPGTVEERVTGLCFRPPTKGPAEQAGDCSDSDGEEHRLSGASRSTGGKMGEYSQEVAPSPRVGGEIVAPQADEKDANRSGNLWVERLEADLLVSTNDNRLRILVSGERGVTVGFKLKGHSTEGELGRHTAARYSDDGNFIVSGATDGSVHVWSTPTTPPGTKSVTWSSGREGHERAQVCDKRVGVPVAFFAPASVAKNLGGTSSRVIVTGDNEGNCKIFCERLANRE 2440
            MPPLPAKKSPGTSDAA+SNLAKQPPA SPRAVSSLKPDT DGATFES+LSYKPS GEDTLAVYEAV+DPSKWLLKNKETGQEVEATAFADTLLARRPAPQWATVSPRLGSHS GSRGWPRLQR KAPAFQRPTLLPPSNGD+A+FP A AGPLTPP LQLGFSSLSGR+SPLRFGARSPVSGQSFSRPR GSNSHGRSNSDST SS ILSVDA P+FKLRNMSTTQLLPRLH GGVRAMSFSPSGAFLATCGMDRRCCVFRVQ+RRQT AL  GSPNAAA AV L VDRGMSRQP+S  VEGRL+DDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEA GGRFLTGCMDARIRLFSL SPEVEQSVLSERAVTAVAFCPGGQ FAAGGIAGNVEFYRM+NMSLELTVECRRHGFRHSAAQRTRLATSPVRRLSVGTGDGRSNGAGGDRVXXXXXXXXXXXXXXXXXXXXXNTLGSRAGARVPGTVEERVTGLCFRPPTKGPAE AGDCSDSDGEEHRLSGASRSTGGKMGE SQEVAPSPR GGE+VAPQADEKDAN SGNLWVERLEADLLVSTNDNR RILVSGERGVTVGFKLKGHSTEGELGRHTAARYSDDGN IVSGATDGSVHVW TPTTPPGTKSVTWSSGREGHERA+VCDKRVGVPVAFFAPASVAKNLGGTSSRVIVTGDNEGNCKIFCE+ A+ E
Sbjct:    1 MPPLPAKKSPGTSDAAASNLAKQPPAESPRAVSSLKPDTSDGATFESYLSYKPSHGEDTLAVYEAVSDPSKWLLKNKETGQEVEATAFADTLLARRPAPQWATVSPRLGSHSHGSRGWPRLQRHKAPAFQRPTLLPPSNGDVAYFPLAPAGPLTPPSLQLGFSSLSGRASPLRFGARSPVSGQSFSRPRCGSNSHGRSNSDSTTSSVILSVDAPPTFKLRNMSTTQLLPRLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTLALGEGSPNAAAVAVGLPVDRGMSRQPSSVCVEGRLVDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEAHGGRFLTGCMDARIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQSFAAGGIAGNVEFYRMENMSLELTVECRRHGFRHSAAQRTRLATSPVRRLSVGTGDGRSNGAGGDRVXXXXXXXXXXXXXXXXXXXXXNTLGSRAGARVPGTVEERVTGLCFRPPTKGPAELAGDCSDSDGEEHRLSGASRSTGGKMGENSQEVAPSPRAGGEVVAPQADEKDANGSGNLWVERLEADLLVSTNDNRSRILVSGERGVTVGFKLKGHSTEGELGRHTAARYSDDGNLIVSGATDGSVHVWPTPTTPPGTKSVTWSSGREGHERARVCDKRVGVPVAFFAPASVAKNLGGTSSRVIVTGDNEGNCKIFCEQRADGE 742          
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: A0A196S6S1_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S6S1_BLAHN)

HSP 1 Score: 104 bits (259), Expect = 9.760e-20
Identity = 72/220 (32.73%), Postives = 109/220 (49.55%), Query Frame = 2
Query:  902 RLHHGGVRAMSFSPSGAFLATCGMDRRCCVFRVQRRRQTTALRAGSPNAAAAAVSLSVDRGMSRQPNSDSVEGRLIDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELTVECR-RHG 1558
            R H   +  M FS    +LAT G D    +++V                          R ++++   ++++ R+ +DQP+R  TGH   +V  AW+  +  LL+ S D TVR WHP   N C  +++H   VTSV + P  EA    F++GCMD ++R++S+    V +   +   +T V FCPGG+  AAG   G V FY  D +     +ECR RHG
Sbjct:   64 RHHQNAIWTMKFSCDRKYLATGGEDGVVNIWKV--------------------------RKVTKEEWKENMDVRIFEDQPVRSYTGHTSHIVDFAWSK-NGFLLSASLDCTVRLWHPDYDN-CLCIFKHKDMVTSVDFYPEEEAY---FISGCMDRKLRVWSIPQGCVLKWTQAPSVITTVTFCPGGRLCAAGLSDGQVIFYYSDGLRYFTQMECRNRHG 252          
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: A0A6P5ZYP4_DURZI (WD repeat-containing protein 44-like isoform X1 n=3 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZYP4_DURZI)

HSP 1 Score: 78.6 bits (192), Expect = 5.410e-11
Identity = 75/271 (27.68%), Postives = 121/271 (44.65%), Query Frame = 2
Query:  908 HHGGVRAMSFSPSGAFLATCGMDRRCCVFRV--QRRRQTTALRAGSP-------NAAAAAVSLSVDRGMSRQPNS-----DSV------EGRLIDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELTVE-----------CRRHGFRHSAAQRTRL----ATSPVRRL 1615
            H G +  M FSP G +LA+ G D    V++V    R   + +   +P       N  +  V L  D+    + NS     DS       +   I D+P+    GH   V+ L+W+   + +L+ S D TVR W  +  +EC +V+ H   VT V + P  +     F++G +D ++R++++H  +V         VTAV + P G+    G + G+  FY   +  L+L  +           CR  GF+ S  +  +L    A S VR L
Sbjct:  277 HEGSILTMKFSPDGQYLASAGEDGIVRVWQVVESERSGNSDIHDVNPSYFYFTVNNFSELVPLHADKDKKGKSNSVKKSSDSTCVIFPQKVFRILDKPIHEFRGHCGEVLDLSWSKNKH-ILSSSVDKTVRLWQ-VGYDECQKVFSHNNYVTCVQFNPVDDDY---FISGSIDGKVRIWTIHDCQVVDWTDVTDIVTAVCYRPDGKGAIIGSMTGSCRFYDASDNHLQLNAQICLQSKKKSPCCRITGFQFSPGEPDKLMVTSADSQVRIL 542          
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: A0A8B8QXD0_9MYRT (uncharacterized protein LOC115755639 isoform X1 n=2 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8QXD0_9MYRT)

HSP 1 Score: 77.0 bits (188), Expect = 1.820e-10
Identity = 62/237 (26.16%), Postives = 104/237 (43.88%), Query Frame = 2
Query:  908 HHGGVRAMSFSPSGAFLATCGMDRRCCVFRVQRRRQTTAL--------------RAGSPNAAAAAVSLSVDRGMSRQPNSDSVEGRL---------------IDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLE 1531
            H+G + ++ FS  G +LA+ G DR   ++RV    +   L                GSP      +S +VD  + R+    S   R                + ++P+    GH+D V+ L+W+   + LL+ S D TVR WH L    C +V+ H   VT + + P  +     F++G +DA++R++S+   +V         VTA  + P GQ    G   G+   Y + +  L+
Sbjct:  422 HNGSIWSIKFSLDGRYLASAGEDRVIHIWRVSESERKGELVEKPEEGNFSLLFTATGSPERTT--LSPTVDNYLERKRRGRSSVSRKSVNVDHMLVPETMFSLTEKPICSFRGHLDDVLDLSWSKSQH-LLSSSMDKTVRLWH-LCSKSCLKVFSHSDYVTCIQFNPVDDRY---FISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYDISDNKLQ 651          
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: A0A1Q3CUH6_CEPFO (WD40 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CUH6_CEPFO)

HSP 1 Score: 77.0 bits (188), Expect = 1.890e-10
Identity = 62/233 (26.61%), Postives = 104/233 (44.64%), Query Frame = 2
Query:  908 HHGGVRAMSFSPSGAFLATCGMDRRCCVFRVQRRRQTTALRAGSPNAAAAAVSLSVDR-----GMSRQPNSDSVEGR---------------------LIDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSL 1528
            H G +  + FS  G FLA+ G D+   V+ VQ   +  ++  G+      ++S S DR      +S  P+    +G+                     L+ ++P+   TGH+D V+ L+W+     LL+ S D TVR W  +E   C +++ H   VT + + P  +     F++G +DA+IR++S+   +V         VTA  + P GQ    G   G    Y  ++  L
Sbjct:  391 HQGSIWTIKFSSDGRFLASAGEDKVIHVWEVQEC-EILSMNEGNLTPIHPSMSSSPDRPPVLGDISPMPSEKKKKGKGSSSRRANSIPDYVHVPETVCLLSEKPVCSFTGHLDDVLDLSWSRSQ-LLLSSSMDKTVRLWD-METKSCLKLFAHNDYVTCIHFNPMDDDY---FISGSLDAKIRIWSIPERQVVNWADLHEMVTAACYTPDGQGAVIGSHKGGCRMYCTEDCKL 617          
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: A0A2G5C849_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5C849_AQUCA)

HSP 1 Score: 75.9 bits (185), Expect = 3.880e-10
Identity = 64/238 (26.89%), Postives = 103/238 (43.28%), Query Frame = 2
Query:  908 HHGGVRAMSFSPSGAFLATCGMDRRCCVFRV----QRRRQTTALRA----GSPNA--------AAAAVSLSVDRGMSRQPNSDSVEGR---------------LIDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSL 1528
            H G +  + FS  G +LA+ G D   CV  V    +  R+   L      G+PN          +A V  ++D  + ++    +   R                + ++PLR   GH+D V+ L+W+   + LL+ S D TVR WH +  N C +V+ H   VT + + P  +     F++G +DA++R++S+   +V         VTA  + P GQ    G   GN   Y      L
Sbjct:  330 HSGSIWCIKFSLDGRYLASAGED---CVIHVWQVVESERKGDLLMEKQDDGNPNLYFAVNGSPESALVLSNIDSHLEKKRRGRTSISRKSISLEHIVVPESVFALSEKPLRSFRGHLDDVLDLSWSKSQH-LLSSSMDKTVRLWH-MASNSCLKVFSHSDYVTCIQFNPVDDRY---FISGSLDAKVRIWSIPDRQVVDWNDLHEMVTAACYTPDGQGALVGTYKGNCYLYNTSENKL 559          
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: F6H267_VITVI (Uncharacterized protein n=3 Tax=Vitis TaxID=3603 RepID=F6H267_VITVI)

HSP 1 Score: 75.1 bits (183), Expect = 7.010e-10
Identity = 57/240 (23.75%), Postives = 100/240 (41.67%), Query Frame = 2
Query:  908 HHGGVRAMSFSPSGAFLATCGMDRRCCVFRVQRRRQTTA------------------LRAGSPNAAAAAVSLSVDRGMSRQPNSDSVEGRLID--------------DQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLE 1531
            H+G + ++ FS  G +LA+ G D   CV  V +  +T                    + +GSP   + + ++  +    ++    SV  + +               ++P     GH D V+ L+W+     LL+ S D TVR WH L    C +++ H   VT + + P  +     F++G +DA++R++S+   +V         VTA  + P GQ    G   G+   Y      L+
Sbjct:  402 HNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVETERKGDLLTEKPEDGNLNLLFVASGSPEPTSMSPNVDNNSSEKKRRGRSSVSRKSVSLDHIKVPETVFGLSEKPFCSFQGHGDDVLDLSWSSKSQQLLSSSMDKTVRLWH-LSSKSCLKIFSHSDYVTCIQFNPVDDRY---FISGSLDAKVRIWSIPDRQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCRLYNTSENKLQ 634          
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: A0A5B7B042_DAVIN (Putative WD repeat-containing protein 44 (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B042_DAVIN)

HSP 1 Score: 72.4 bits (176), Expect = 8.260e-10
Identity = 40/135 (29.63%), Postives = 67/135 (49.63%), Query Frame = 2
Query: 1127 IDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLE 1531
            + ++P+    GH+D V+ L+W+   + LL+ S D TVR WH L    C +++ H   VT + + P  +     F++G +DA++R++S+   +V         VTA  + P GQ    G   GN   Y      L+
Sbjct:  159 LSEKPICSFQGHLDDVLDLSWSKSQH-LLSSSMDKTVRLWH-LSSKSCLKIFSHSDYVTCIQFNPVDDKY---FISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGALVGSYKGNCRLYNTSENKLQ 288          
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: M5WQ47_PRUPE (Uncharacterized protein n=2 Tax=Prunus persica TaxID=3760 RepID=M5WQ47_PRUPE)

HSP 1 Score: 73.6 bits (179), Expect = 2.040e-9
Identity = 60/237 (25.32%), Postives = 103/237 (43.46%), Query Frame = 2
Query:  908 HHGGVRAMSFSPSGAFLATCGMDRRCCVFRVQRRRQTTALRA--------------GSPNAAAAAVSLSVDRGMSRQPNSDSVEGR---------------LIDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLE 1531
            H+G + ++ FS  G +LA+ G D    V++V    +   L                GSP  ++  VS +VD  + ++    S   R                + ++P+    GH+D V+ L+W+   + LL+ S D TVR WH L    C +++ H   VT + + P  +     F++G +DA++R++S+   +V         VTA  + P GQ    G   G+   Y      L+
Sbjct:  371 HNGSIWSIKFSLDGKYLASAGEDCVIHVWKVMESERKGDLLMEKSEDSNFNLLFSNGSPEPSS--VSPNVDNHVEKKRRGRSSISRKSVSSDHYVIPETVFALSEKPISSFQGHLDDVLDLSWSKSQH-LLSSSMDKTVRLWH-LSTKTCLKIFSHSDYVTCIQFNPVDDRY---FISGSLDAKVRIWSIPDRQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCRLYNTSENKLQ 600          
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Match: A0A1D6IU83_MAIZE (Transducin/WD40 repeat-like superfamily protein n=4 Tax=Zea mays TaxID=4577 RepID=A0A1D6IU83_MAIZE)

HSP 1 Score: 73.6 bits (179), Expect = 2.080e-9
Identity = 68/242 (28.10%), Postives = 104/242 (42.98%), Query Frame = 2
Query:  908 HHGGVRAMSFSPSGAFLATCGMDRRCCVFRVQRRRQTTAL--------RAG------SPNAAAAAVSLSVDR--GMSRQPNSDSVEGR--------------LIDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELTVE 1543
            H G + ++ FS  G  LA+ G D    V RV +  +T+A         ++G      SP AA  A S +      M ++P      GR               + +QP  VL GH D V+ L W+  D  LL+ S D TVR W   E   C + + H   VT + + P  +     F++G +DA++RL+S+   +V         VTA ++ P GQ    G   G+   Y+  +  L    +
Sbjct:  415 HEGSIWSIKFSADGRRLASAGED---SVVRVWQVVETSAPPCSLAMDGKSGPLAPLPSPGAADGASSTTTPALASMPKKPAKGKSGGRDALPEHLVVPDKVFALAEQPACVLEGHQDDVLDLTWSKSDQ-LLSSSMDKTVRLWD-TESQACLKTFAHSDYVTCIQFNPVDDRY---FISGSLDAKVRLWSIPDRQVVDWTDLNEMVTAASYTPDGQGAIIGSHKGSCRLYKTADCKLSAEAQ 648          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12783.2302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVB5_ECTSI0.000e+093.53Protein phosphatase type 2A regulator/ signal tran... [more]
A0A196S6S1_BLAHN9.760e-2032.73Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
A0A6P5ZYP4_DURZI5.410e-1127.68WD repeat-containing protein 44-like isoform X1 n=... [more]
A0A8B8QXD0_9MYRT1.820e-1026.16uncharacterized protein LOC115755639 isoform X1 n=... [more]
A0A1Q3CUH6_CEPFO1.890e-1026.61WD40 domain-containing protein n=1 Tax=Cephalotus ... [more]
A0A2G5C849_AQUCA3.880e-1026.89Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]
F6H267_VITVI7.010e-1023.75Uncharacterized protein n=3 Tax=Vitis TaxID=3603 R... [more]
A0A5B7B042_DAVIN8.260e-1029.63Putative WD repeat-containing protein 44 (Fragment... [more]
M5WQ47_PRUPE2.040e-925.32Uncharacterized protein n=2 Tax=Prunus persica Tax... [more]
A0A1D6IU83_MAIZE2.080e-928.10Transducin/WD40 repeat-like superfamily protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12783contigEcto-sp13_S_contig12783:1357..4916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1320.8
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FVB5
Preferred nameWDR44
Model size3540
KEGG koko:K20241
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
Exons2
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG0283@1,KOG0283@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-14_000490.1
Cds size2232
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462683.791045-UTR-Ecto-sp13_S_contig12783:1356..18571681462683.791045-UTR-Ecto-sp13_S_contig12783:1356..1857Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12783 1357..1857 -
1681462683.8040147-UTR-Ecto-sp13_S_contig12783:1877..24701681462683.8040147-UTR-Ecto-sp13_S_contig12783:1877..2470Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12783 1878..2470 -
1681462683.8246222-UTR-Ecto-sp13_S_contig12783:4702..49161681462683.8246222-UTR-Ecto-sp13_S_contig12783:4702..4916Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12783 4703..4916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462683.8142452-CDS-Ecto-sp13_S_contig12783:2470..47021681462683.8142452-CDS-Ecto-sp13_S_contig12783:2470..4702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12783 2471..4702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12783.2302.1prot_Ecto-sp13_S_contig12783.2302.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12783 2471..4702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12783.2302.1

>prot_Ecto-sp13_S_contig12783.2302.1 ID=prot_Ecto-sp13_S_contig12783.2302.1|Name=mRNA_Ecto-sp13_S_contig12783.2302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=744bp
MPPLPAKKSPGTSDAASSNLAKQPPALSPRAVSSLKPDTDDGATFESFLS
YKPSQGEDTLAVYEAVNDPSKWLLKNKETGQEVEATAFADTLLARRPAPQ
WATVSPRLGSHSQGSRGWPRLQRQKAPAFQRPTLLPPSNGDIAFFPPASA
GPLTPPFLQLGFSSLSGRSSPLRFGARSPVSGQSFSRPRSGSNSHGRSNS
DSTASSAILSVDASPSFKLRNMSTTQLLPRLHHGGVRAMSFSPSGAFLAT
CGMDRRCCVFRVQRRRQTTALRAGSPNAAAAAVSLSVDRGMSRQPNSDSV
EGRLIDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGN
ECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDARIRLFSLHSPEVEQS
VLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELTVECRRHGFR
HSAAQRTRLATSPVRRLSVGTGDGRSNGAGGDRVEVNDNGNTNGGSGRGR
GRRRRNTLGSRAGARVPGTVEERVTGLCFRPPTKGPAEQAGDCSDSDGEE
HRLSGASRSTGGKMGEYSQEVAPSPRVGGEIVAPQADEKDANRSGNLWVE
RLEADLLVSTNDNRLRILVSGERGVTVGFKLKGHSTEGELGRHTAARYSD
DGNFIVSGATDGSVHVWSTPTTPPGTKSVTWSSGREGHERAQVCDKRVGV
PVAFFAPASVAKNLGGTSSRVIVTGDNEGNCKIFCERLANREQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig12783:1357..4916-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12783.2302.1 ID=mRNA_Ecto-sp13_S_contig12783.2302.1|Name=mRNA_Ecto-sp13_S_contig12783.2302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3560bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12783:1357..4916- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGACGTTGGGTAATTTGCAAGATTTAGCTTATATGGGCACATAGGCGC TCGATTGCAGTTTGGTAGACGTAACACCCGACGTATCTGAGCGCTCAATT GCAGTTTGGTAGACGTAACACTCGACGTAACACCCGCTGTTTCTTAATCT TGCCTTGCGAACTGTCGTGCATGTCTCTTTGTTTTTTCCATCAGATAACG GGAAGGAGTCGGTTATGCCACCTCTGCCCGCCAAGAAAAGCCCCGGGACC AGCGATGCTGCTTCATCGAACCTTGCCAAACAGCCACCGGCGTTGTCTCC GAGAGCCGTTTCTTCTCTCAAGCCGGACACGGATGATGGTGCAACCTTCG AGAGCTTCCTCTCGTATAAACCTTCTCAAGGCGAAGATACCCTTGCAGTT TATGAAGCTGTGAACGATCCATCGAAATGGCTCTTGAAGAACAAGGAAAC TGGCCAAGAGGTCGAGGCCACAGCGTTCGCAGACACACTTTTGGCTCGTC GTCCAGCCCCCCAATGGGCCACGGTCTCACCACGCCTGGGATCACACTCA CAAGGAAGCAGGGGCTGGCCAAGACTGCAGCGACAAAAAGCCCCCGCATT TCAGCGGCCAACTTTGCTTCCTCCAAGCAACGGCGACATTGCTTTCTTCC CGCCGGCCTCTGCGGGTCCGCTCACCCCGCCTTTTCTCCAATTGGGGTTT TCGAGCTTGTCGGGTAGGTCGTCGCCCTTGCGGTTTGGGGCGAGATCGCC GGTGTCGGGACAGTCCTTCTCGCGTCCGCGCAGTGGAAGCAACTCCCATG GCCGAAGCAACAGCGACAGCACGGCAAGCAGTGCCATCCTCAGCGTCGAC GCATCCCCCAGTTTCAAGCTCCGCAACATGAGCACGACCCAGCTGTTGCC GAGGCTCCACCACGGAGGTGTGAGGGCGATGTCGTTTAGCCCTTCCGGTG CATTCCTCGCGACATGCGGAATGGACCGACGGTGCTGCGTTTTTCGGGTA CAAAGGCGTCGCCAAACAACGGCTCTCAGAGCAGGTTCTCCGAACGCCGC AGCGGCAGCCGTTAGCCTTTCGGTGGACCGAGGAATGTCGAGGCAGCCGA ACTCCGATTCCGTGGAGGGGCGCCTGATAGATGACCAACCTCTGCGGGTT CTCACGGGGCATGTTGATTCTGTTGTGGCCTTGGCTTGGGCGGGAGGGGA CAACGCGCTCTTGACAGGGTCATCCGACGGGACTGTGCGCTGTTGGCACC CGTTGGAGGGGAACGAGTGCTCGGAAGTTTACGAGCATGGGGGGGGAGTG ACTTCCGTAGCCTGGGAGCCCGGAGGTGAAGCGCGCGGGGGTAGATTTTT GACGGGGTGCATGGACGCGAGAATCCGACTGTTTTCCTTGCATTCTCCGG AGGTGGAACAATCGGTTCTGTCGGAGAGGGCTGTGACTGCCGTAGCTTTT TGTCCGGGTGGACAACGCTTTGCCGCGGGCGGCATAGCCGGCAACGTTGA GTTCTACCGCATGGACAACATGTCGCTCGAGCTGACGGTCGAGTGCCGCC GGCATGGCTTTCGGCATTCGGCTGCACAGCGAACACGCCTCGCTACGAGC CCCGTCAGACGGCTGTCCGTGGGCACCGGCGACGGGCGGTCAAATGGTGC CGGCGGCGACCGCGTCGAGGTCAATGATAACGGCAATACCAACGGCGGCA GCGGCAGAGGGCGCGGCAGAAGACGACGAAACACATTGGGGTCGAGAGCC GGAGCTCGAGTTCCAGGCACCGTAGAGGAACGAGTCACGGGACTGTGCTT CCGCCCACCAACGAAAGGGCCGGCTGAGCAGGCCGGGGACTGCAGTGATT CAGATGGGGAAGAGCACCGACTGAGCGGCGCCTCACGCAGCACTGGGGGG AAGATGGGTGAATACTCGCAAGAGGTAGCCCCGAGTCCCCGCGTTGGAGG TGAGATCGTGGCACCGCAGGCCGACGAGAAGGATGCGAACCGTAGTGGCA ATCTATGGGTGGAGCGTCTCGAGGCTGACCTCCTCGTGAGCACAAACGAC AACCGCTTGCGCATACTGGTGTCAGGGGAGCGGGGTGTGACTGTCGGGTT CAAGCTCAAAGGGCACAGCACCGAGGGGGAACTCGGGCGGCACACGGCGG CGCGATACAGCGACGACGGAAACTTCATCGTAAGCGGTGCCACGGATGGA AGTGTTCACGTCTGGTCCACGCCGACCACTCCTCCAGGCACCAAATCGGT GACTTGGTCGAGTGGGCGGGAGGGGCACGAGCGGGCGCAGGTGTGCGATA AAAGGGTAGGTGTCCCGGTGGCCTTCTTTGCCCCCGCTAGCGTTGCGAAG AACCTCGGAGGGACATCGAGCCGTGTGATCGTGACCGGAGACAACGAGGG AAATTGCAAAATATTCTGCGAACGGCTTGCAAATAGAGAACAGTGAGGGT CGCGTTGGGTTTGGGCATGTCTCTATCTCTCTTTTTCTGCGCATCAGCAG CTTTTGCTCCTGGTGTGTGTTCGTGGTATTCGACGTCTGTACCTTTTGAA ATGTTTACAATGGTTCTTCGGAGGTGCTGTGTGCGTGTAAGCGACTTTAT AGGACAGAGAACGGCCGGAGGCCGATGCAAATGAAAACGCTGCGCATACC GTGCGTATTGTGTGGTTTGGTTTTGGCATTCGTTTCGCGCATGAAATTTT TTTTTTGCGTATGTTGACGTTTTGGGGTGCCTTTCCCAGTTGAATACCCG CTGCCTGAAGTGTATGTGCTGTTCTGTTGTGTGAACGTGCCTATGCCCAC GTGCACGTTTTGTATTCGTGTCGGTGGAATTTACCCGTATTCTCCATGCT AGAAGAGTTGGACCTGTGGCAAACAAACCAAAAAATAATTCAAGATCTGT CTCAGTGCATTCAGGCGTGGTGGTGGTGGTGGCGGTCATTTGCTATGTAT GTATGTTGCTTCGTAAGTTGTCCTTTCTCATCGTGCTGGGAGGTGTCGAA TCAGCAGGCTCTACCGCACGTGAACTAGAGATGGGCCCCGTTTGAAAAAT AACGGGTAGTACGTGGTTTTTGAAAACCAGCAGGCGTTTTGGAGTGACGG TTATAAAAAAGAACGGAGGTAATTCGAAAAGGAGGCGTTTTTCAACCGGT TTCACCCTAGTATCCGGCTTTGAAAAACCCGTTTTTCGGCGGTTTTTTGC TTGAGAATGGCGCCTCCTTGCCGGTTTTGCTCATTGGTTGTTCCATTTTG GTGCCCATCCCTTCTTTGACCCTACGACAAAAGATCGTGTGCGTGAAATA CTGCGCCATTCACCGGCAGTATTGGAAGACGGTATGTATGCCATGAGGGC ACAAAACAGACCCAGTTTTTGAGTGATTACGGAGGCGTTTCCTTACATGA TCCGGTGAATAAGTTTAACCGGTTAATCGGGGCTGGGAACAAACGGTTAT ACCGATTATTGGATTTTGAGAACAACGCCTCCTGGTCGATTATCGGATGT AACGGCTACTGCTTTTCCACCCATCTCTAACTGGAACCCGTCTTGATGCC GTGTCTCCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12783:1357..4916-

>mRNA_Ecto-sp13_S_contig12783.2302.1 ID=mRNA_Ecto-sp13_S_contig12783.2302.1|Name=mRNA_Ecto-sp13_S_contig12783.2302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2232bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12783:1357..4916- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCTCTGCCCGCCAAGAAAAGCCCCGGGACCAGCGATGCTGCTTC
ATCGAACCTTGCCAAACAGCCACCGGCGTTGTCTCCGAGAGCCGTTTCTT
CTCTCAAGCCGGACACGGATGATGGTGCAACCTTCGAGAGCTTCCTCTCG
TATAAACCTTCTCAAGGCGAAGATACCCTTGCAGTTTATGAAGCTGTGAA
CGATCCATCGAAATGGCTCTTGAAGAACAAGGAAACTGGCCAAGAGGTCG
AGGCCACAGCGTTCGCAGACACACTTTTGGCTCGTCGTCCAGCCCCCCAA
TGGGCCACGGTCTCACCACGCCTGGGATCACACTCACAAGGAAGCAGGGG
CTGGCCAAGACTGCAGCGACAAAAAGCCCCCGCATTTCAGCGGCCAACTT
TGCTTCCTCCAAGCAACGGCGACATTGCTTTCTTCCCGCCGGCCTCTGCG
GGTCCGCTCACCCCGCCTTTTCTCCAATTGGGGTTTTCGAGCTTGTCGGG
TAGGTCGTCGCCCTTGCGGTTTGGGGCGAGATCGCCGGTGTCGGGACAGT
CCTTCTCGCGTCCGCGCAGTGGAAGCAACTCCCATGGCCGAAGCAACAGC
GACAGCACGGCAAGCAGTGCCATCCTCAGCGTCGACGCATCCCCCAGTTT
CAAGCTCCGCAACATGAGCACGACCCAGCTGTTGCCGAGGCTCCACCACG
GAGGTGTGAGGGCGATGTCGTTTAGCCCTTCCGGTGCATTCCTCGCGACA
TGCGGAATGGACCGACGGTGCTGCGTTTTTCGGGTACAAAGGCGTCGCCA
AACAACGGCTCTCAGAGCAGGTTCTCCGAACGCCGCAGCGGCAGCCGTTA
GCCTTTCGGTGGACCGAGGAATGTCGAGGCAGCCGAACTCCGATTCCGTG
GAGGGGCGCCTGATAGATGACCAACCTCTGCGGGTTCTCACGGGGCATGT
TGATTCTGTTGTGGCCTTGGCTTGGGCGGGAGGGGACAACGCGCTCTTGA
CAGGGTCATCCGACGGGACTGTGCGCTGTTGGCACCCGTTGGAGGGGAAC
GAGTGCTCGGAAGTTTACGAGCATGGGGGGGGAGTGACTTCCGTAGCCTG
GGAGCCCGGAGGTGAAGCGCGCGGGGGTAGATTTTTGACGGGGTGCATGG
ACGCGAGAATCCGACTGTTTTCCTTGCATTCTCCGGAGGTGGAACAATCG
GTTCTGTCGGAGAGGGCTGTGACTGCCGTAGCTTTTTGTCCGGGTGGACA
ACGCTTTGCCGCGGGCGGCATAGCCGGCAACGTTGAGTTCTACCGCATGG
ACAACATGTCGCTCGAGCTGACGGTCGAGTGCCGCCGGCATGGCTTTCGG
CATTCGGCTGCACAGCGAACACGCCTCGCTACGAGCCCCGTCAGACGGCT
GTCCGTGGGCACCGGCGACGGGCGGTCAAATGGTGCCGGCGGCGACCGCG
TCGAGGTCAATGATAACGGCAATACCAACGGCGGCAGCGGCAGAGGGCGC
GGCAGAAGACGACGAAACACATTGGGGTCGAGAGCCGGAGCTCGAGTTCC
AGGCACCGTAGAGGAACGAGTCACGGGACTGTGCTTCCGCCCACCAACGA
AAGGGCCGGCTGAGCAGGCCGGGGACTGCAGTGATTCAGATGGGGAAGAG
CACCGACTGAGCGGCGCCTCACGCAGCACTGGGGGGAAGATGGGTGAATA
CTCGCAAGAGGTAGCCCCGAGTCCCCGCGTTGGAGGTGAGATCGTGGCAC
CGCAGGCCGACGAGAAGGATGCGAACCGTAGTGGCAATCTATGGGTGGAG
CGTCTCGAGGCTGACCTCCTCGTGAGCACAAACGACAACCGCTTGCGCAT
ACTGGTGTCAGGGGAGCGGGGTGTGACTGTCGGGTTCAAGCTCAAAGGGC
ACAGCACCGAGGGGGAACTCGGGCGGCACACGGCGGCGCGATACAGCGAC
GACGGAAACTTCATCGTAAGCGGTGCCACGGATGGAAGTGTTCACGTCTG
GTCCACGCCGACCACTCCTCCAGGCACCAAATCGGTGACTTGGTCGAGTG
GGCGGGAGGGGCACGAGCGGGCGCAGGTGTGCGATAAAAGGGTAGGTGTC
CCGGTGGCCTTCTTTGCCCCCGCTAGCGTTGCGAAGAACCTCGGAGGGAC
ATCGAGCCGTGTGATCGTGACCGGAGACAACGAGGGAAATTGCAAAATAT
TCTGCGAACGGCTTGCAAATAGAGAACAGTGA
back to top