prot_Ecto-sp13_S_contig12781.2300.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12781.2300.1
Unique Nameprot_Ecto-sp13_S_contig12781.2300.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length563
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12781.2300.1 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE)

HSP 1 Score: 599 bits (1545), Expect = 1.000e-200
Identity = 449/547 (82.08%), Postives = 454/547 (83.00%), Query Frame = 0 
Query:   33 VEAWVLLACAARATGNAGEAVSMFRRALGLDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELSGDSSPSSNGTTSAVHQGRRSSRRSSSHQHRLCFPLEATRQGFQPGGGGGVTIGGGSXG-ASGALTVLPVALAEVMWRVARASMAARDWPTAILALEGLVAAEATADGGASPREGLTYYFASFAKDGGARASRRGPGRARVLRALAFSQIQRGLYRNALETVGMVLGDGSSXXXXXXXXXXXXXXXXXXXX------LMLRADALLCLEEDETCARDSLERALRLLTRRQVDLSVPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRVEITEAPTGGSGKSDSRNHPAFSPPXXXXXXXXXXXXXRPKDDRDRRLARAAAFNNRAVLLIASGRGEEACRLLRACLLLLPEEPRPTFNFSLALWRLGRRRDACAHWLEARRWLGDGGGRREAYVKLLESARRRKLSLQSDAVNNAKXXXXXXXXXXXXXXXXXXXX---------VTSHVTEGSGGDPLSLPQIQV 563
            VEAW+LLACAARATGNAGEAVSMFRRAL LDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELSG S PSSNG TSAVHQGRR+S RSSSHQHRLCFPLEA RQGFQPGG          X  ASGALTVLPVALAEVMWRVARASMAARDWPTAILALEGLVAAEATA G ASPREGL YYFASFAK GGARASRRGPGRARVLRALA+SQIQRGLYR+ALETVG VLGDGS XXXXXXXXXXXXXXXXXXXX      LMLRADALLCLEEDETCA DSL+RALRLL RRQVDLSVP P   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           XXXXXXXXXXXXX         LARAAAFNNRAVLLIA GRGEEACRLLRACLLLLPEEPRPTFNFSLALWRLGRRRDACAHWLEARRWLG GGGRREAYVKLLESARRRKLSLQSDAVN A         XXXXXXXXXXXX         VTSHVTEGSGGDPLSLPQIQV
Sbjct:  512 VEAWLLLACAARATGNAGEAVSMFRRALALDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELSGGSLPSSNGATSAVHQGRRNSSRSSSHQHRLCFPLEARRQGFQPGGXXXXXXXXXXXXXASGALTVLPVALAEVMWRVARASMAARDWPTAILALEGLVAAEATAGGEASPREGLAYYFASFAKGGGARASRRGPGRARVLRALAYSQIQRGLYRDALETVGTVLGDGSGXXXXXXXXXXXXXXXXXXXXXXXXXXLMLRADALLCLEEDETCAGDSLDRALRLLARRQVDLSVPPPSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LARAAAFNNRAVLLIAFGRGEEACRLLRACLLLLPEEPRPTFNFSLALWRLGRRRDACAHWLEARRWLGVGGGRREAYVKLLESARRRKLSLQSDAVNKANKTGGHGDSXXXXXXXXXXXXXXXXXXXXXVTSHVTEGSGGDPLSLPQIQV 1055
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BLAST of mRNA_Ecto-sp13_S_contig12781.2300.1 vs. uniprot
Match: D7FTU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU3_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 5.540e-119
Identity = 213/238 (89.50%), Postives = 215/238 (90.34%), Query Frame = 0 
Query:   33 VEAWVLLACAARATGNAGEAVSMFRRALGLDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELSGDSSPSSNGTTSAVHQGRRSSRRSSSHQHRLCFPLEATRQGFQPGGGGGVTIGGGSXGASGALTVLPVALAEVMWRVARASMAARDWPTAILALEGLVAAEATADGGASPREGLTYYFASFAKDGGARASRRGPGRARVLRALAFSQIQRGLYRNALETVGMVLGDGSS 270
            VEAWVLLACAARATGNAGEAVSMFRRAL LDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELSG SSPSSNG TSAVHQGRRSS RSSSHQHRLCFPLEATRQGFQP GGG            GAL VLPVA AEVMWRVARASMAA+DWPTAILALEGLVAAEATADG AS REGL YYFASFAKDGGARASRRGPGRARVLRALAFSQIQRGLYR+ALETV MVLGDGSS
Sbjct:  496 VEAWVLLACAARATGNAGEAVSMFRRALALDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELSGGSSPSSNGATSAVHQGRRSSSRSSSHQHRLCFPLEATRQGFQPSGGGXXXX-------XGALVVLPVAPAEVMWRVARASMAAKDWPTAILALEGLVAAEATADGVASSREGLAYYFASFAKDGGARASRRGPGRARVLRALAFSQIQRGLYRDALETVRMVLGDGSS 726
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BLAST of mRNA_Ecto-sp13_S_contig12781.2300.1 vs. uniprot
Match: A0A7V3DGU3_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V3DGU3_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.090e-5
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:   35 AWVLLACAARATGNAGEAVSMFRRALGLDPQCLEAVYGVARVLQESGDHAAS 86
            AW LL    RA GN  EA+ +FR+ALG DP+C+EA+ G+A +L E GD A +
Sbjct: 1169 AWSLLGIVRRAEGNTDEAIGLFRKALGFDPRCIEALMGMAEILDEHGDKAGA 1220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12781.2300.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1V4_9PHAE1.000e-20082.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU3_ECTSI5.540e-11989.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7V3DGU3_9BACT1.090e-551.92Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 33..66
e-value: 0.015
score: 24.5
coord: 425..458
e-value: 21.0
score: 12.2
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 34..66
e-value: 6.8E-5
score: 22.8
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 33..66
score: 9.47
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 425..458
score: 5.871
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..92
e-value: 2.2E-7
score: 33.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 33..487
IPR039684Fanconi anemia group G proteinPANTHERPTHR15254FAMILY NOT NAMEDcoord: 289..486
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 33..66
score: 9.564
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 425..458
score: 6.903

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12781contigEcto-sp13_S_contig12781:456..4928 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12781.2300.1mRNA_Ecto-sp13_S_contig12781.2300.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12781 456..4928 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12781.2300.1 ID=prot_Ecto-sp13_S_contig12781.2300.1|Name=mRNA_Ecto-sp13_S_contig12781.2300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=563bp
GGAAAAAAAAAAAAPEEEAGRCMWRAGGGGGGVEAWVLLACAARATGNAG
EAVSMFRRALGLDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQEL
SGDSSPSSNGTTSAVHQGRRSSRRSSSHQHRLCFPLEATRQGFQPGGGGG
VTIGGGSGGASGALTVLPVALAEVMWRVARASMAARDWPTAILALEGLVA
AEATADGGASPREGLTYYFASFAKDGGARASRRGPGRARVLRALAFSQIQ
RGLYRNALETVGMVLGDGSSGGGGGGSSDGGSREEEDAAMLMLRADALLC
LEEDETCARDSLERALRLLTRRQVDLSVPAPPPPPPPSRAAATGSAFGES
SPPAPKRKKPAAEQQQQQEQQQPRVEITEAPTGGSGKSDSRNHPAFSPPP
HGTGGGGTGGGVRPKDDRDRRLARAAAFNNRAVLLIASGRGEEACRLLRA
CLLLLPEEPRPTFNFSLALWRLGRRRDACAHWLEARRWLGDGGGRREAYV
KLLESARRRKLSLQSDAVNNAKKTGGHGGSSSAAAAAAAAAAVTSHVTEG
SGGDPLSLPQIQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR039684FANCG
IPR013026TPR-contain_dom