mRNA_Ecto-sp13_S_contig102093.230.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig102093.230.1
Unique NamemRNA_Ecto-sp13_S_contig102093.230.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig102093.230.1 vs. uniprot
Match: A0A6H5KW71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 8.960e-13
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 3 
Query:    6 GCPKQPKYGVAGTKKSEFC*GHRKAGMVDVVNR 104
            GCPKQPKYGVAGTKK EFC GHRKAGMVDVVNR
Sbjct:    8 GCPKQPKYGVAGTKKREFCSGHRKAGMVDVVNR 40
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BLAST of mRNA_Ecto-sp13_S_contig102093.230.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 7.640e-6
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 3 
Query:    9 CPKQPKYGVAGTKKSEFC*GHRKAGMVDVVNRRC 110
            C K+P YGVAG+KK EFC  H + GMV+V N+RC
Sbjct:    9 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_Ecto-sp13_S_contig102093.230.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 7.790e-6
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 3 
Query:    9 CPKQPKYGVAGTKKSEFC*GHRKAGMVDVVNRRC 110
            C K+P YGVAG+KK EFC  H + GMV+V N+RC
Sbjct:   69 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102093.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW71_9PHAE8.960e-1393.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI7.640e-661.76EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE7.790e-661.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig102093contigEcto-sp13_S_contig102093:49..249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size202
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.2194147-CDS-Ecto-sp13_S_contig102093:48..2491681462515.2194147-CDS-Ecto-sp13_S_contig102093:48..249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102093 49..249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig102093.230.1prot_Ecto-sp13_S_contig102093.230.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig102093 49..249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig102093.230.1

>prot_Ecto-sp13_S_contig102093.230.1 ID=prot_Ecto-sp13_S_contig102093.230.1|Name=mRNA_Ecto-sp13_S_contig102093.230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MVVVPSSPSMVLPARKRASFARDTGRPAWWTSSTEGAPTTVAASSQTMVS
LQKKRAEYCAEHKESGM
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mRNA from alignment at Ecto-sp13_S_contig102093:49..249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig102093.230.1 ID=mRNA_Ecto-sp13_S_contig102093.230.1|Name=mRNA_Ecto-sp13_S_contig102093.230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102093:49..249+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGTTGTCCCAAGCAGCCCAAGTATGGTGTTGCCGGCACGAAAAAG
AGCGAGTTTTGCTAGGGACACCGGAAGGCCGGCATGGTGGACGTCGTCAA
CAGAAGGTGCTCCTACGACGGTTGCAGCAAGCAGCCAAACTATGGTTTCG
TTGCAAAAAAAACGGGCTGAGTATTGCGCTGAACACAAGGAAAGCGGGAT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig102093:49..249+

>mRNA_Ecto-sp13_S_contig102093.230.1 ID=mRNA_Ecto-sp13_S_contig102093.230.1|Name=mRNA_Ecto-sp13_S_contig102093.230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102093:49..249+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGTTGTCCCAAGCAGCCCAAGTATGGTGTTGCCGGCACGAAAAAG
AGCGAGTTTTGCTAGGGACACCGGAAGGCCGGCATGGTGGACGTCGTCAA
CAGAAGGTGCTCCTACGACGGTTGCAGCAAGCAGCCAAACTATGGTTTCG
TTGCAAAAAAAACGGGCTGAGTATTGCGCTGAACACAAGGAAAGCGGGAT
G
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