mRNA_Ecto-sp13_S_contig12780.2299.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12780.2299.1
Unique NamemRNA_Ecto-sp13_S_contig12780.2299.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: D7FLI2_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI2_ECTSI)

HSP 1 Score: 522 bits (1345), Expect = 8.140e-180
Identity = 253/259 (97.68%), Postives = 255/259 (98.46%), Query Frame = 1 
Query:    1 MDDNVSPEALLTGHRKLRTPVQVVPFPGRKPVVPLEGHADDDLEADGGGGAWRRDQAVPAGESPRWAGGADDGPGDSSGHRRDIVRNTSYMPRHHKSEVNPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEDREKPFNKWRRALKHPICWCLRFQCTLFGFWWISVKGECADKEDAPIIVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCLQ 777
            MDDNVSPEALLTGHRKLRTPVQVVPFPGRKPV PLEGHADDDLEADGGGGAWRRDQAVPAGESPRWAGGADDGP DSSGHRRDIVRNTSYMPRHHKSEVNPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEE REKPF+KWRRALKHPICWCLRFQC LFGFWWISVKGECADKEDAPIIVSNHVSPFEPFYLVSKT+ATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCLQ
Sbjct:    1 MDDNVSPEALLTGHRKLRTPVQVVPFPGRKPVAPLEGHADDDLEADGGGGAWRRDQAVPAGESPRWAGGADDGPIDSSGHRRDIVRNTSYMPRHHKSEVNPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEGREKPFSKWRRALKHPICWCLRFQCALFGFWWISVKGECADKEDAPIIVSNHVSPFEPFYLVSKTQATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCLQ 259
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: A0A6H5KRC5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC5_9PHAE)

HSP 1 Score: 517 bits (1331), Expect = 1.550e-176
Identity = 250/259 (96.53%), Postives = 254/259 (98.07%), Query Frame = 1 
Query:    1 MDDNVSPEALLTGHRKLRTPVQVVPFPGRKPVVPLEGHADDDLEADGGGGAWRRDQAVPAGESPRWAGGADDGPGDSSGHRRDIVRNTSYMPRHHKSEVNPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEDREKPFNKWRRALKHPICWCLRFQCTLFGFWWISVKGECADKEDAPIIVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCLQ 777
            MDDNVSPEALLTGHRKLRTPVQVVPFPGRKPVVP EG ADDD+EADGGGGAWRR+QAVPAGESPRWAGGADDGPGDSSGHRRDIVRNTSYMPRHHKSEVNPFINLTMHLPWYQYLKMVIVGVTILPFRIL T VNVFFMWCFATLALAGLSEE REKPF+KWRRALKHPICWCLRFQCTLFGFWWISVKGECADKEDAPIIVSNHVSPFEPFYLVSKT+ATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCLQ
Sbjct:    3 MDDNVSPEALLTGHRKLRTPVQVVPFPGRKPVVPFEGLADDDVEADGGGGAWRRNQAVPAGESPRWAGGADDGPGDSSGHRRDIVRNTSYMPRHHKSEVNPFINLTMHLPWYQYLKMVIVGVTILPFRILLTFVNVFFMWCFATLALAGLSEEGREKPFSKWRRALKHPICWCLRFQCTLFGFWWISVKGECADKEDAPIIVSNHVSPFEPFYLVSKTQATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCLQ 261
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: A0A835YMY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMY3_9STRA)

HSP 1 Score: 153 bits (386), Expect = 7.800e-39
Identity = 80/172 (46.51%), Postives = 110/172 (63.95%), Query Frame = 1 
Query:  250 IVRNTSYMPRHHKSEVNPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEDREKPFNKWRRALKHPICWCLRFQCTLFGFWWISVKGECADKEDAPIIVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKK 765
            + R  SY+P   + +VNPF+N T+ +   + LKMV++G+ +   R+  T VNV  M+ F+ L  AG  E     P  + R   K+P+ WCLR Q  LFGF W++V G    K  API+VSNHVSPFEP +L+  T ATPVQR EDS  PI+G IQ+A+Q++FVDR +  S+K
Sbjct:   42 VRRANSYIPNFRREDVNPFVNHTITMSLAENLKMVVLGLLLGVPRLALTGVNVVCMYVFSVLVTAGHQEGA---PMGRIRSLFKYPVYWCLRVQLWLFGFLWVNVIGRPLPKHVAPILVSNHVSPFEPLFLIFCTHATPVQRSEDSTTPIIGRIQRALQVLFVDRLDENSRK 210
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: A0A7S2NNB3_9DINO (Calmodulin n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NNB3_9DINO)

HSP 1 Score: 114 bits (285), Expect = 2.250e-25
Identity = 70/178 (39.33%), Postives = 99/178 (55.62%), Query Frame = 1 
Query:  256 RNTSYMPR--HHKSEVNPFINLTMHLPW--YQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEDRE----KPFNKWRRALKHPICWCLRFQCTLFGFWWISVKGECADKEDAPIIVSNHVSPF-EPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASK 762
            R TS++P    H +  NPF NLT   PW  +  +++ +V VT+LP R++ T VNV      A +A  GL E D +     P N WRRA+   +   +RFQ  LFGFW I VKG CA +E+APIIV+NHVS   E  +++   +    +R   S  P++     A   +FVDR +P S+
Sbjct:    1 RRTSFVPLLDEHPALANPFFNLTAGAPWTCFSRIRVALVAVTLLPLRLVLTFVNVPLALIVAQIATLGLREADYDPLDGSPLNAWRRAIFSLVSLLVRFQLLLFGFWRIRVKGRCASREEAPIIVANHVSGLVEGMFMIQYAKLA--ERSYASN-PVLAPFMLATSCIFVDRKDPDSR 175
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: A0A3Q2W571_HAPBU (Lysophospholipid acyltransferase LPCAT4-like n=1 Tax=Haplochromis burtoni TaxID=8153 RepID=A0A3Q2W571_HAPBU)

HSP 1 Score: 104 bits (260), Expect = 5.390e-22
Identity = 61/161 (37.89%), Postives = 91/161 (56.52%), Query Frame = 1 
Query:  298 NPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEDREKPFNKWRRALKHPICWCL-RFQCTLFGFWWISVKGECADKEDAPI-IVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCL 774
            +PFI+ TM L   Q ++ +I+G  + P R+   ++    MW  A L LAGLSEE+R KP   WRR   HPI W L R      GF+WI VKG  A+ ++AP+ +V+ H S  +   L     AT V R E++  P++G + +  Q + V R +P S+K+ +
Sbjct:   16 HPFIH-TMKLTRAQRIRGIILGSILFPIRVTLAVLCFLIMWPIARLRLAGLSEEERSKPVEGWRRWFYHPIIWLLSRAVFFSLGFYWIKVKGRRANLKEAPVLVVAPHSSFLDMLVLCPAQLATVVSRSENTSLPVIGALLECNQSVLVSRRDPESRKEAV 175
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: L8GHE2_ACACA (EF hand domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GHE2_ACACA)

HSP 1 Score: 103 bits (257), Expect = 1.500e-21
Identity = 58/162 (35.80%), Postives = 94/162 (58.02%), Query Frame = 1 
Query:  295 VNPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEED-REKPFNKWRRALKHPICWCLRFQCTLFGFWWISVKGECADKEDAPIIVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCLQ 777
            VNPFIN ++ +  Y++ K+V+  V + P R++  +           +AL GLS  D  +KPF +WR+ +   + +  R    ++GF++I VKG+ AD ++API+VSNHVS F+  +         + R E+   P VGT+  AMQ + VDR +P S+KK ++
Sbjct:   38 VNPFINESIAITGYEWFKLVVGSVLLAPIRLVLILXXXXXXXXXXKIALLGLSVRDIHDKPFTRWRKNVLLLVRYMARALLFVWGFYYIPVKGKQADFDEAPILVSNHVSMFDVLFFYYYELPRFISRKENIHMPFVGTVLCAMQGILVDRKDPDSRKKAVE 199
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: A0A8C3AEE1_CYCLU (Lysophosphatidylcholine acyltransferase 4 n=2 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3AEE1_CYCLU)

HSP 1 Score: 102 bits (255), Expect = 2.550e-21
Identity = 62/161 (38.51%), Postives = 90/161 (55.90%), Query Frame = 1 
Query:  298 NPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEDREKPFNKWRRALKHPIC-WCLRFQCTLFGFWWISVKGECADKEDAPI-IVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCL 774
            +PFI+  + L   Q ++ VI+G  + P RI  T +    MW  A L LAGLSEE+R +P   WRR L HP+  W  R      GF W+ VKG  AD ++AP+ +V+ H S  +   L+    AT V R E++  P+VG + +  Q + V R +P S+KK +
Sbjct:   15 HPFIH-EVKLTRAQRIRGVILGSVLCPLRIAMTALCFLVMWPVARLRLAGLSEEERARPVEGWRRRLLHPLMLWLSRLAFFFLGFLWVEVKGRRADLKEAPVLVVAPHSSFLDMVALIPTQLATVVSRSENTGLPVVGALLEFNQSVMVSRTDPESRKKAV 174
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: A0A3P9D2N4_9CICH (Lysophospholipid acyltransferase LPCAT4 n=11 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A3P9D2N4_9CICH)

HSP 1 Score: 102 bits (254), Expect = 3.410e-21
Identity = 60/161 (37.27%), Postives = 90/161 (55.90%), Query Frame = 1 
Query:  298 NPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEDREKPFNKWRRALKHPICWCL-RFQCTLFGFWWISVKGECADKEDAPI-IVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCL 774
            +PFI+  M L   Q ++ +I+G  + P R+   ++ +  MW  A L LAGLSEE+R KP   WRR   HPI W L R      GF+WI VKG  A+ ++AP+ +V+ H S  +         AT V R E++  P++G + +  Q + V R +P S+KK +
Sbjct:   16 HPFIH-KMKLTRAQRIRGIILGSILFPIRVTLAVLFLLIMWPIARLRLAGLSEEERSKPVEGWRRWFYHPIIWLLSRAVFFSLGFYWIKVKGRRANLKEAPVLVVAPHSSFLDMLVFCPAQLATVVSRSENTSLPVIGALLEFNQSVLVSRKDPESRKKAV 175
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: UPI001BE63D4F (lysophospholipid acyltransferase LPCAT4 n=1 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BE63D4F)

HSP 1 Score: 100 bits (248), Expect = 2.250e-20
Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = 1 
Query:  298 NPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEDREKPFNKWRRALKHPICWCL-RFQCTLFGFWWISVKGECADKEDAPI-IVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCL 774
            +PFI+  + L   Q ++ +I+G  + P RI    ++   MW  A L LAGLSEE+R +P   WRR L HPI W L R      GF W+ VKG  AD ++AP+ +V+ H    +   L     AT V R E++  P++G + +  Q + V R +P S++K +
Sbjct:   15 HPFIH-EVKLTRAQRIRGIILGSILFPLRITLATLSFIIMWPLARLRLAGLSEEERSRPVEGWRRWLFHPIIWLLSRAVFVSLGFLWVKVKGRRADLKEAPVLVVAPHSGFLDMLVLCPAQLATVVSRSENTSLPVIGALLEFNQSVLVSRKDPESRRKAV 174
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BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Match: A0A668T4X2_OREAU (Lysophosphatidylcholine acyltransferase 4 n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668T4X2_OREAU)

HSP 1 Score: 98.2 bits (243), Expect = 7.120e-20
Identity = 59/161 (36.65%), Postives = 88/161 (54.66%), Query Frame = 1 
Query:  298 NPFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGLSEEDREKPFNKWRRALKHPICWCL-RFQCTLFGFWWISVKGECADKEDAPI-IVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRANPASKKKCL 774
            +PFI+  + L   Q ++ +I+G  + P R+    V    MW  A L LAGLSEE+R KP   WRR   HPI W L R      GF+W+ VKG  A+ ++AP+ +V+ H    +   L     AT V R E++  P++G + +  Q + V R +P S+KK +
Sbjct:   16 HPFIH-KVKLTRAQRIRGIILGSILFPIRVTLAGVCFLIMWPIARLRLAGLSEEERSKPVEGWRRWFYHPIIWLLSRAVFFSLGFYWVKVKGRRANLKEAPVLVVAPHSGFLDMLVLCPAQLATVVSRSENTSLPVIGALLEFNQSVLVSRKDPESRKKAV 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12780.2299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLI2_ECTSI8.140e-18097.681-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A6H5KRC5_9PHAE1.550e-17696.53EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YMY3_9STRA7.800e-3946.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2NNB3_9DINO2.250e-2539.33Calmodulin n=1 Tax=Brandtodinium nutricula TaxID=1... [more]
A0A3Q2W571_HAPBU5.390e-2237.89Lysophospholipid acyltransferase LPCAT4-like n=1 T... [more]
L8GHE2_ACACA1.500e-2135.80EF hand domain containing protein n=1 Tax=Acantham... [more]
A0A8C3AEE1_CYCLU2.550e-2138.51Lysophosphatidylcholine acyltransferase 4 n=2 Tax=... [more]
A0A3P9D2N4_9CICH3.410e-2137.27Lysophospholipid acyltransferase LPCAT4 n=11 Tax=P... [more]
UPI001BE63D4F2.250e-2036.65lysophospholipid acyltransferase LPCAT4 n=1 Tax=Ch... [more]
A0A668T4X2_OREAU7.120e-2036.65Lysophosphatidylcholine acyltransferase 4 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12780contigEcto-sp13_S_contig12780:1201..4812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score529.3
Seed ortholog evalue1e-147
Seed eggNOG ortholog2880.D7FLI2
Preferred nameLPCAT2
Model size777
KEGG rclassRC00004,RC00037
KEGG koko:K13510,ko:K13512
KEGG ReactionR01318,R03437,R03438,R04413,R04480,R09035,R09036
KEGG Pathwayko00564,ko00565,ko01100,map00564,map00565,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001654,GO:0001775,GO:0001894,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005811,GO:0005886,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006656,GO:0006658,GO:0006663,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010563,GO:0010604,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016407,GO:0016411,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019216,GO:0019220,GO:0019222,GO:0019637,GO:0030141,GO:0030258,GO:0030659,GO:0030667,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0035577,GO:0036148,GO:0036150,GO:0036151,GO:0036152,GO:0036230,GO:0042119,GO:0042171,GO:0042175,GO:0042176,GO:0042582,GO:0042592,GO:0043010,GO:0043129,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045055,GO:0045321,GO:0045732,GO:0045833,GO:0045936,GO:0046469,GO:0046470,GO:0046471,GO:0046473,GO:0046474,GO:0046486,GO:0046890,GO:0046903,GO:0047144,GO:0047159,GO:0047184,GO:0047191,GO:0047192,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048871,GO:0048875,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0060041,GO:0060249,GO:0060255,GO:0061024,GO:0065007,GO:0065008,GO:0071071,GO:0071072,GO:0071617,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090407,GO:0097164,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099503,GO:1901564,GO:1901566,GO:1901576,GO:1903725,GO:1903726,GO:2001245,GO:2001246
Exons6
EggNOG free text desc.1-alkylglycerophosphocholine O-acetyltransferase activity
EggNOG OGsCOG0204@1,KOG4666@2759
Ec32 ortholog description1-acyl-sn-glycerol-3-phosphate acyltransferase
Ec32 orthologEc-17_001090.1
EC2.3.1.23,2.3.1.67
Cds size777
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12780.2299.1prot_Ecto-sp13_S_contig12780.2299.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12780 1201..4812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462683.5803487-CDS-Ecto-sp13_S_contig12780:1200..13091681462683.5803487-CDS-Ecto-sp13_S_contig12780:1200..1309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12780 1201..1309 +
1681462683.5940158-CDS-Ecto-sp13_S_contig12780:2399..25841681462683.5940158-CDS-Ecto-sp13_S_contig12780:2399..2584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12780 2400..2584 +
1681462683.6032183-CDS-Ecto-sp13_S_contig12780:3041..32011681462683.6032183-CDS-Ecto-sp13_S_contig12780:3041..3201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12780 3042..3201 +
1681462683.6124837-CDS-Ecto-sp13_S_contig12780:3752..38591681462683.6124837-CDS-Ecto-sp13_S_contig12780:3752..3859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12780 3753..3859 +
1681462683.6219368-CDS-Ecto-sp13_S_contig12780:4300..44651681462683.6219368-CDS-Ecto-sp13_S_contig12780:4300..4465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12780 4301..4465 +
1681462683.6308475-CDS-Ecto-sp13_S_contig12780:4761..48121681462683.6308475-CDS-Ecto-sp13_S_contig12780:4761..4812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12780 4762..4812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12780.2299.1

>prot_Ecto-sp13_S_contig12780.2299.1 ID=prot_Ecto-sp13_S_contig12780.2299.1|Name=mRNA_Ecto-sp13_S_contig12780.2299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MDDNVSPEALLTGHRKLRTPVQVVPFPGRKPVVPLEGHADDDLEADGGGG
AWRRDQAVPAGESPRWAGGADDGPGDSSGHRRDIVRNTSYMPRHHKSEVN
PFINLTMHLPWYQYLKMVIVGVTILPFRILFTIVNVFFMWCFATLALAGL
SEEDREKPFNKWRRALKHPICWCLRFQCTLFGFWWISVKGECADKEDAPI
IVSNHVSPFEPFYLVSKTRATPVQRIEDSRAPIVGTIQKAMQIMFVDRAN
PASKKKCLQ
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mRNA from alignment at Ecto-sp13_S_contig12780:1201..4812+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12780.2299.1 ID=mRNA_Ecto-sp13_S_contig12780.2299.1|Name=mRNA_Ecto-sp13_S_contig12780.2299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12780:1201..4812+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGATAACGTATCGCCAGAGGCATTGCTTACAGGCCATAGGAAGCT
GAGGACCCCGGTACAAGTGGTCCCGTTCCCAGGGAGAAAACCTGTGGTTC
CATTGGAAGGTGGAACGACGAGGCGCCAGCTTGTCGTCGTCGAGCGTTGG
TTTGTCCTCTTGAGCGGCCGCTCACACACAGTGCTAGGTTGCAGCTGTAT
TTCTTAAGAGTAGGTCGGAATTGACTTTGTTTGTGTTCAATGTGCTCTTG
CTGCTGGATTTGGTCGTCGATCCTCGCAGATTCATTTCGGGAAAAGGGTA
GGCGAGTAGTAACCATGGATGGATTCCGCATGAGACACAACGGTTACTGA
CAACACGTTGCCCATGAGCCCCTACGACACGCGAAGCCCCGCCTTTCCGG
TTGGGGTTGATTGGAATGATCCTTGGGTACTACTCGTGCTTGTCTTGTCT
TGACGAAGGATGGCACGTCACGATTTGTTTGAATGGGAAGAATGCACTCC
TAAGAACAATACAAGAATTGAAGTTGGTGGGCGGTCAAACAATTGCCACG
CAACGGACCGGTAGACGGTATGAGGGACACGTGCCATCTAGAAGAACAGT
CTAGCACATTGCATGTCTTTTTCCTGTGTTTTCCTTGCAAAAGCATGCAC
GCGCGTTCAACATTGTGAGTGGAAGACACGGCGGCAGTCTCTGTGGATTG
AGGCAAAAAAGCGTTGCTCTGTTCTTCGGGTACGGACGGAACATTCTGTC
ACCAAGGCAAACCGATGGTAGGTCCGCACTAGAGCCCCCCCCCCGGCGGT
CGGGTTGCCGTCCGTCGGTGTTGATTTTCGCTTGTCTCGTGCCTTTGCCG
ACACCATCTGCTTGGGCAAAACCCCGGCCGATGCAATGGTATGGAGCAGG
GAGGCGTGCTTGGCCGGTTCAACGCGCTGGACAATGTCCCGCCGCACCGT
CGTCAATCGTTGGTTTTGCGCGCTCCTGTGGTCTCATTTCCCCCCCATGC
GATGCGTTTATTTGCCTGTGGTTACCTGATTGACGGCAGCCGTAGAGGGC
CCTCACCAACGCCGGTACGGCGTATCGACCGGTGCCATTCAATTTACAGA
ATGATGCAGGTTGCCCACTAATTTCAACGGCTCTACACAGGGCCGCCGGC
GTTAAGTAGTAATCCTGACCCCCCTCCACTGCTGTATCAACGTCTGTAGG
CCATGCTGACGATGACCTCGAGGCTGATGGCGGAGGCGGTGCTTGGAGAA
GAGACCAAGCGGTACCCGCGGGGGAAAGCCCACGCTGGGCGGGCGGCGCG
GACGATGGACCTGGTGACAGCAGCGGACATCGTCGGGATATAGTGCGGAA
CACGTCGTACATGCCGCGCCACCATAAGTCGGAGGTACGTGTTACAACAT
GGGGGGGGGGCGGAGGGGCGTGCAGTAGGTGCTACGGGGTGGGGTAGCGT
GGTCGACTTGTGGCTTTTTTAGGTACTGTACGTACGATCAAATAATTAGT
ACCCGTTCGACATATAACCACAGTCGCAAAGGAATTGTAGCTTGTTAGGC
CGGGGTATGAACTTGGTATATTGCTCTGTAGACGTACATGGCTACCTGCG
GTTAATTTCGTGGCGTTTTTTTTGTCTCTAGCGTTAGGAGGTGCGTATAG
GGACCACTAGAGCCAACCTCATACTGCGCTCAACGCGTGCGCGGAAGCCC
GCACGAAACACTCATGCTGTGCGCGGAGCCATCTATTTTCACGACGTCTT
GATCGCTTTGGAAAACGCTCATCAGAGGCGAGGTGTACAAAGCCTCAACC
GCTTCTCCCTACACGTATCGTCGGTCGTCTCCACCCACCAGGTTAACCCG
TTCATCAACCTGACGATGCACCTCCCATGGTACCAGTACCTGAAGATGGT
GATCGTGGGCGTCACGATACTGCCGTTCCGAATCTTGTTCACCATCGTCA
ACGTGTTTTTCATGTGGTGCTTCGCCACTCTGGCTCTGGCGGGACTGTCA
GGTACGTTTCTGATTGGACGCGGCCTTCCGGCGTGGAAGTAGGCGTGCAG
CAGTGGTTCCTTTGCCCGAAGCATTGATCGAGGAAGATCTCGTCGCGTCC
AAGTTCGAGGACGGTCAGTGACTCAAGAAACGCTCCCTGAGGGCACGGCT
TAGTTTCATCGCTCTCCGCTGATCCGCGGAAAGGAAAACATCGCCTTTGC
CATCGTGACGTCAGTGTGCTCGATGAACAGCAGTAGACTTCATGCCTGTC
ACATCACTAGGAGAAGCGCCGATGATACCACCGTCGTGTTGATAGCCTTG
TTACCCACCATCTTTTACCTTTAATATGTTACCGTCGTCCCGTCCCCCTC
GAGCTCCACGCTATTTACTGCCGCCGTATTTTTATCGCTGTTTTATTTCC
CAATGTGATCATGTCCTTCCGTCTCCCGTTTGCCGACTCCTCCGTGGCCA
CCGAAAACTGTGCCCTATTCCTCGTCCTCCTGGTCTCATTTCTCCTCCTG
TTCTTCCTCCGCCGTTGTTTTGTGGGCACGAAATCATCGTATGCGATAAA
AGAGGAAGACAGAGAAAAGCCCTTCAACAAGTGGAGGCGAGCGCTGAAGC
ACCCCATCTGCTGGTGCCTTCGATTTCAGTGCACGCTCTTCGGCTTTTGG
TGGATTTCGGTGAGAGACCTTCTTAGGGAATAGGAGCGTATTTGGGGTCG
GTTGTCTTCAGCGAAAACTTCGACCTTTGGGAGATCTTGATGATGTTCCG
ACTGGTGAATGCGTGGAGAAAAGCTTGGTGCTTGCGTGCACAGGTGAAGG
CACACTCCGTTTTGCCGACCTTTTCCTGTTTTTTGTAGTTGATGGTACGG
CGGGACTGCGGCAAGGAATGTTGGTCGCGTTTATGCAGCAGTAAACAAAT
GACCGGTCGTTGGGACGCGTATCAACACCAACGCCAACGACAACTGCATA
GGAACAACTGTTTGGAGAGAAAGTGCGCGAAAAGGCACGTAGAGGCGGGA
CGTGGGGTTGGAGCAGGCAGAAATTAACGCGGACGACTTGCAGCATCAAC
GACGCGGGGACCAACAACGATGAACACACCTACGCATGCACACCAAACAG
GTGAAGGGGGAGTGCGCCGACAAGGAAGATGCCCCGATAATCGTGTCCAA
TCACGTCTCGCCTTTCGAGCCGTTCTACCTCGTCAGCAAGACGCGAGCCA
CTCCGGTGCAGCGGATAGAGGACTCGCGAGCACCGATCGTGGGTACTATC
CAGAAGGCCATGCAGGTAAGGTTCGCTGCGTCTGTTTCTGGGGAATGAGC
TGCAGGGGCACACCAAAATACTGGATACCTTCCTGCAACATCAACAACAC
ATGCATGCGTTCCAATACTTGTTTTTCAGGATGGATGGCCTCGATGCTTT
TGTTGACTGTTTGGTTGTTAGTGTGACGTCTACTTTTTCTGTTTTGTTTG
CTGCTGGGCGGTAGGTGACGTCTCTCCATTTTTTGTTCTCTTACTTTCAA
CTCGTTTCAACACCCCTAGTCTGCTACCGCTGCTGCTGCTGCGGTTTCGT
CCGTTTTGCAGATTATGTTTGTTGATCGGGCTAACCCTGCGTCGAAGAAG
AAGTGTCTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12780:1201..4812+

>mRNA_Ecto-sp13_S_contig12780.2299.1 ID=mRNA_Ecto-sp13_S_contig12780.2299.1|Name=mRNA_Ecto-sp13_S_contig12780.2299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12780:1201..4812+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGATAACGTATCGCCAGAGGCATTGCTTACAGGCCATAGGAAGCT
GAGGACCCCGGTACAAGTGGTCCCGTTCCCAGGGAGAAAACCTGTGGTTC
CATTGGAAGGCCATGCTGACGATGACCTCGAGGCTGATGGCGGAGGCGGT
GCTTGGAGAAGAGACCAAGCGGTACCCGCGGGGGAAAGCCCACGCTGGGC
GGGCGGCGCGGACGATGGACCTGGTGACAGCAGCGGACATCGTCGGGATA
TAGTGCGGAACACGTCGTACATGCCGCGCCACCATAAGTCGGAGGTTAAC
CCGTTCATCAACCTGACGATGCACCTCCCATGGTACCAGTACCTGAAGAT
GGTGATCGTGGGCGTCACGATACTGCCGTTCCGAATCTTGTTCACCATCG
TCAACGTGTTTTTCATGTGGTGCTTCGCCACTCTGGCTCTGGCGGGACTG
TCAGAGGAAGACAGAGAAAAGCCCTTCAACAAGTGGAGGCGAGCGCTGAA
GCACCCCATCTGCTGGTGCCTTCGATTTCAGTGCACGCTCTTCGGCTTTT
GGTGGATTTCGGTGAAGGGGGAGTGCGCCGACAAGGAAGATGCCCCGATA
ATCGTGTCCAATCACGTCTCGCCTTTCGAGCCGTTCTACCTCGTCAGCAA
GACGCGAGCCACTCCGGTGCAGCGGATAGAGGACTCGCGAGCACCGATCG
TGGGTACTATCCAGAAGGCCATGCAGATTATGTTTGTTGATCGGGCTAAC
CCTGCGTCGAAGAAGAAGTGTCTCCAG
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