mRNA_Ecto-sp13_S_contig12777.2296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12777.2296.1
Unique NamemRNA_Ecto-sp13_S_contig12777.2296.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12777.2296.1 vs. uniprot
Match: D7G5R4_ECTSI (Similar to DAZ interacting protein 1-like isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R4_ECTSI)

HSP 1 Score: 984 bits (2544), Expect = 0.000e+0
Identity = 564/662 (85.20%), Postives = 585/662 (88.37%), Query Frame = 1 
Query:    1 RFEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQLVNLQTAVAGMELETEGNLQGTKAMKNSARLLRKENRKQDKIINGYAAMLRIHNPGLASKVFLDDKGRLKVRRLDDAARXXXXXXXXXXXXXXXXXXXXXRVDTTTGDDETPSNEAQQGAFPAGSAFSQGNGS-DWAEAGAPAPRIGRGPRPSSTPITAAVESFHYRDNGFSLDNGREQGEGRVAAPTDIREALLVEGGRSPDVRDSIGERVESLGATTARGGGGRGDVTHGGTRLDPERQDSWAAGSSLSRGREGFGVEPPAPRVGGSSGAAGARPGSGAGDGSTLSLAGTDPCTGNRPLVVAGAGGKRGSSGVNAEVYAGSSTAGPATGPRASRSQGVDSVVGLNAGGVANDDS--LAFDGWRGTGSGSPMRRGGTSTSGEEFHGDRRVSGEGLRGVDRSPRVVTVAVKPKKTPPASAGEGREGHSTXXXXXXXXXXXSEANDSETALSVQADGRGEASMVRLDAEAIRCENERRKMGTFSENKTTAGHSSERPTTLSGEVDVAGADTARLPRSGGTKLTKGN-LDDTVPASPSLVTDAARLGLEGDEFPDVSDFDLDDISEIDAGGEWRGSAAGSGSLSS 1974
            +FEPTTGSVDWHRVAT  VSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQ V+LQTAVAGMELETEGNLQGTKAMKNSARLLRKENRKQDKIINGYAAMLRIHNPGLASKVFLDDKGRLKVRRLDDAAR XXXXXXXXXXXXXXXXXXXXRVD TTGDDETPSN  ++GA PAGSAFS GNGS DW+EA   APR GRGPRPS TP+ A  ESF YRD+GFSLDNGREQ EGRVAAP+DIREALLVEGGRSPDVRD IGERVESLGATTARGGGGRGD+THGGTRLD ERQDSWAAGSSLSRG EGFGVEP APR  GSSGAAGARPGSG   GSTLSLAGTD  TGNRP+ VAGAGGKRGSSG+NAEVYAGSSTAGPATGPRASRSQG DS VG NAGGVA+DDS  LAFDGWRGT SGSPMRRGG+S SGEEFHGDRRVSGEGL GVDRSPRVVTVAVKPKKT P SAGEGREGHST            EANDS TALS +ADG GE S+V LDAEA   ENERR+ GTF E +TT G++SERP  LSG V VA ADTARLP SGGT+LTK N LD TVPASPSLVTDAARLGLEGDEFPD+ DFDLDDISEIDAGGEW GSAAGSGSLSS
Sbjct:  299 KFEPTTGSVDWHRVATVNVSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQFVSLQTAVAGMELETEGNLQGTKAMKNSARLLRKENRKQDKIINGYAAMLRIHNPGLASKVFLDDKGRLKVRRLDDAARRXXXXXXXXXXXXXXXXXXXXRVDKTTGDDETPSNGTERGASPAGSAFSHGNGSSDWSEARGGAPRTGRGPRPSITPMPAPAESFKYRDSGFSLDNGREQDEGRVAAPSDIREALLVEGGRSPDVRDGIGERVESLGATTARGGGGRGDLTHGGTRLDAERQDSWAAGSSLSRGTEGFGVEPTAPRDRGSSGAAGARPGSGGDGGSTLSLAGTDLRTGNRPIAVAGAGGKRGSSGMNAEVYAGSSTAGPATGPRASRSQGGDSAVGSNAGGVASDDSGSLAFDGWRGTSSGSPMRRGGSSRSGEEFHGDRRVSGEGLSGVDRSPRVVTVAVKPKKTRPTSAGEGREGHSTSPPSPQQRDRRLEANDSATALSARADGSGETSVVALDAEATLRENERRRSGTFPEKQTTGGYTSERPAPLSGGVTVARADTARLPGSGGTQLTKANKLDVTVPASPSLVTDAARLGLEGDEFPDLLDFDLDDISEIDAGGEWAGSAAGSGSLSS 960
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12777.2296.1 vs. uniprot
Match: A0A6H5JTU5_9PHAE (Dzip-like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU5_9PHAE)

HSP 1 Score: 961 bits (2485), Expect = 0.000e+0
Identity = 540/658 (82.07%), Postives = 560/658 (85.11%), Query Frame = 1 
Query:    1 RFEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQLVNLQTAVAGMELETEGNLQGTKAMKNSARLLRKENRKQDKIINGYAAMLRIHNPGLASKVFLDDKGRLKVRRLDDAARXXXXXXXXXXXXXXXXXXXXXRVDTTTGDDETPSNEAQQGAFPAGSAFSQGNGSDWAEAGAPAPRIGRGPRPSSTPITAAVESFHYRDNGFSLDNGREQGEGRVAAPTDIREALLVEGGRSPDVRDSIGERVESLGATTARGGGGRGDVTHGGTRLDPERQDSWAAGSSLSRGREGFGVEPPAPRVGGSSGAAGARPGSGAGDGSTLSLAGTDPCTGNRPLVVAGAGGKRGSSGVNAEVYAGSSTAGPATGPRASRSQGVDSVVGLNAGGVANDDSLAFDGWRGTGSGSPMRRGGTSTSGEEFHGDRRVSGEGLRGVDRSPRVVTVAVKPKKTPPASAGEGREGHSTXXXXXXXXXXXSEANDSETALSVQADGRGEASMVRLDAEAIRCENERRKMGTFSENKTTAGHSSERPTTLSGEVDVAGADTARLPRSGGTKLTKGNLDDTVPASPSLVTDAARLGLEGDEFPDVSDFDLDDISEIDAGGEWRGSAAGSGSLSS 1974
            +FEPTTGSVDWHRVATA VSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQ ++LQTAVAGMELETEGNLQG KAMKNSARLLRKENRKQDKIINGYAAMLRIHNPGLASKVFLDDKGRLK RRLDDAAR                         TT D ETPSNE +QGA PAGSA SQGNGSDW++AG PAPRIGRGPRP STP+T    SF YRD+GFSL NGRE  EG VAAPTDIREAL VEGGR PDVR+ IGE VESLGATTARGGGGRGD TH  TRLD E QDSW AGSSLSRGREGFGVEPP P V GSSGAAGARP SG G GSTLSLAGTD  TGNRP+VVAGAG +RGSSG+NAEVYAGS TA PATGPRASRSQG DSVVG NAGGVANDDSLA DGWRGTGSGSPMRRGGTS SGEEFH DRRVSGEGL GVDRSPRVVTVAVK KKT P SAGEGREG STXXXXXXXXX   EA+DS+ A+S QADGRGEAS+V+ DAEAIR ENERRK GTF ENKTTA HSS RPTTLSG  DVAGA TA LP SGGTKL + NLD TVP SPSLVT+AARLGLEGDEFPDVSDFD+DDISEIDAGGEW  SAAGSGSLSS
Sbjct:  335 KFEPTTGSVDWHRVATANVSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQFISLQTAVAGMELETEGNLQGIKAMKNSARLLRKENRKQDKIINGYAAMLRIHNPGLASKVFLDDKGRLKARRLDDAARRRDRGRRPERRNRRRCHRERS-AGKTTEDGETPSNETEQGASPAGSALSQGNGSDWSKAGGPAPRIGRGPRPGSTPMTTTTASFKYRDSGFSLGNGRELDEGHVAAPTDIREALFVEGGRPPDVRNGIGEHVESLGATTARGGGGRGDFTHSSTRLDAEGQDSWTAGSSLSRGREGFGVEPPVPGVRGSSGAAGARPESGGGGGSTLSLAGTDHRTGNRPIVVAGAGEERGSSGINAEVYAGSPTARPATGPRASRSQGDDSVVGSNAGGVANDDSLACDGWRGTGSGSPMRRGGTSRSGEEFHDDRRVSGEGLSGVDRSPRVVTVAVKSKKTRPTSAGEGREGRSTXXXXXXXXXRRPEASDSDNAVSDQADGRGEASLVKQDAEAIRRENERRKTGTFPENKTTARHSSGRPTTLSGGEDVAGAATAWLPGSGGTKLKQENLDVTVPDSPSLVTNAARLGLEGDEFPDVSDFDVDDISEIDAGGEWPASAAGSGSLSS 991
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12777.2296.1 vs. uniprot
Match: A0A7S4A1N4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1N4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.050e-12
Identity = 50/150 (33.33%), Postives = 83/150 (55.33%), Query Frame = 1 
Query:    4 FEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDD---DDNFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQLVNLQTAVAGMELETEGNLQGTKAMKNSARLLRKENRKQDKIINGYAAMLRIHNPGLASKVFLDDKGRL 444
            FE  T  VDW RVA+  V ++E+ GD+  LR+FL DV VG +DD   D   + +   + A R +QL AQY+L+ Q VL  +   L+     ++       +  +  ++  +LL +E   Q+++   + ++L+  +P LAS+V  DD GR+
Sbjct:    8 FEERTAPVDWPRVASTDVRRLEKLGDVVALREFLADVCVGDIDDGFVDYESERSQLEMKALRTSQLAAQYLLYAQHVLASRKATLEKGHERLKKAEILERRRYEKRRDRVKLLEEELASQNRLCETHESVLKSIDPILASRVSRDDSGRV 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12777.2296.1 vs. uniprot
Match: A0A8J2SA56_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SA56_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.090e-11
Identity = 50/150 (33.33%), Postives = 83/150 (55.33%), Query Frame = 1 
Query:    4 FEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDD---DDNFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQLVNLQTAVAGMELETEGNLQGTKAMKNSARLLRKENRKQDKIINGYAAMLRIHNPGLASKVFLDDKGRL 444
            FE  T  VDW RVA+  V ++E+ GD+  LR+FL DV VG +DD   D   + +   + A R +QL AQY+L+ Q VL  +   L+     ++       +  +  ++  +LL +E   Q+++   + ++L+  +P LAS+V  DD GR+
Sbjct:    8 FEERTAPVDWPRVASTDVRRLEKLGDVVALREFLADVCVGDIDDGFVDYESERSQLEMKALRTSQLAAQYLLYAQHVLASRKATLEKGHERLKKAEILERRRYEKRRDRVKLLEEELASQNRLCETHESVLKSIDPILASRVSRDDSGRV 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12777.2296.1 vs. uniprot
Match: A0A7J6CZ12_9TELE (C2H2-type domain-containing protein n=16 Tax=Cyprinidae TaxID=7953 RepID=A0A7J6CZ12_9TELE)

HSP 1 Score: 60.8 bits (146), Expect = 7.020e-6
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 1 
Query:    1 RFEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDDDD----NFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQLVNLQTAV-AGMELETEGNLQGTKAMKNSARLLRKENRKQDKII 366
            RF   T  +DW R+++  V ++ER+ D+  L+ F+  V    V+ +         +P L+   R++QL  +Y+LHCQ +L  QL  L+  + A + L   G  Q  +  KN     ++ENR++ K+I
Sbjct:   51 RFRSRTEPIDWRRLSSLDVERVERDMDVDMLQNFITTVTFCAVEGERCPNCQGAADPSLIKLLRMSQLSTEYLLHCQDLLSSQLSGLEERLQAALSLVQRGEEQRAELEKNLQEA-KQENRRRKKMI 176
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12777.2296.1 vs. uniprot
Match: A0A2D4C9M4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9M4_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 2.400e-5
Identity = 36/129 (27.91%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:   25 VDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKV-----DDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQVLQRQLVNLQTAVAGMELETEGNLQGTKAMKNSARLLRKENRKQDKIINGYAAMLRIH 396
            ++W  V  A V ++  +GD++ L +F  DV +G +     +DD +   +  +L AF+LAQL AQY+ HC  +L+ ++ N +T                    ++ R LRK+  + D ++  Y ++L+ H
Sbjct:  250 IEWSSVVAANVPRLFVDGDVEALLRFRRDVLLGDMQREVEEDDSDVHVDEDVLRAFQLAQLSAQYLTHCVDMLEHRVHNYETQATXXXXXXXXXXXXXXDRVDAHRRLRKQRDELDVLLTTYRSLLQHH 378
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12777.2296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G5R4_ECTSI0.000e+085.20Similar to DAZ interacting protein 1-like isoform ... [more]
A0A6H5JTU5_9PHAE0.000e+082.07Dzip-like_N domain-containing protein n=1 Tax=Ecto... [more]
A0A7S4A1N4_9STRA3.050e-1233.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SA56_9STRA4.090e-1133.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7J6CZ12_9TELE7.020e-630.71C2H2-type domain-containing protein n=16 Tax=Cypri... [more]
A0A2D4C9M4_PYTIN2.400e-527.91Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12777contigEcto-sp13_S_contig12777:1365..4839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMammalia
Stop1
Start0
Seed ortholog score60.8
Seed ortholog evalue2.7e-06
Seed eggNOG ortholog59538.XP_005966673.1
Preferred nameDZIP1L
Model size1977
KEGG koko:K16470
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032879,GO:0032880,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons4
EggNOG free text desc.Zinc finger protein
EggNOG OGs28IYV@1,2QRAI@2759,38BJA@33154,3B9XT@33208,3CSHB@33213,3J354@40674,48451@7711,492BH@7742,4J9Q6@91561
Ec32 ortholog descriptionsimilar to DAZ interacting protein 1-like isoform 1
Ec32 orthologEc-12_008830.1
Cds size1977
COG Functional cat.S
Best tax levelCetartiodactyla
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462683.3274384-CDS-Ecto-sp13_S_contig12777:1364..27711681462683.3274384-CDS-Ecto-sp13_S_contig12777:1364..2771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12777 1365..2771 -
1681462683.3394673-CDS-Ecto-sp13_S_contig12777:3374..35901681462683.3394673-CDS-Ecto-sp13_S_contig12777:3374..3590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12777 3375..3590 -
1681462683.3474793-CDS-Ecto-sp13_S_contig12777:3987..41191681462683.3474793-CDS-Ecto-sp13_S_contig12777:3987..4119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12777 3988..4119 -
1681462683.355546-CDS-Ecto-sp13_S_contig12777:4617..48391681462683.355546-CDS-Ecto-sp13_S_contig12777:4617..4839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12777 4618..4839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12777.2296.1prot_Ecto-sp13_S_contig12777.2296.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12777 1365..4839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12777.2296.1

>prot_Ecto-sp13_S_contig12777.2296.1 ID=prot_Ecto-sp13_S_contig12777.2296.1|Name=mRNA_Ecto-sp13_S_contig12777.2296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=659bp
RFEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDDDDNFD
TNPGLLNAFRLAQLQAQYVLHCQQVLQRQLVNLQTAVAGMELETEGNLQG
TKAMKNSARLLRKENRKQDKIINGYAAMLRIHNPGLASKVFLDDKGRLKV
RRLDDAARRRDHRGRRPERRNRRRNYRERRVDTTTGDDETPSNEAQQGAF
PAGSAFSQGNGSDWAEAGAPAPRIGRGPRPSSTPITAAVESFHYRDNGFS
LDNGREQGEGRVAAPTDIREALLVEGGRSPDVRDSIGERVESLGATTARG
GGGRGDVTHGGTRLDPERQDSWAAGSSLSRGREGFGVEPPAPRVGGSSGA
AGARPGSGAGDGSTLSLAGTDPCTGNRPLVVAGAGGKRGSSGVNAEVYAG
SSTAGPATGPRASRSQGVDSVVGLNAGGVANDDSLAFDGWRGTGSGSPMR
RGGTSTSGEEFHGDRRVSGEGLRGVDRSPRVVTVAVKPKKTPPASAGEGR
EGHSTSPPPPQPRHRRSEANDSETALSVQADGRGEASMVRLDAEAIRCEN
ERRKMGTFSENKTTAGHSSERPTTLSGEVDVAGADTARLPRSGGTKLTKG
NLDDTVPASPSLVTDAARLGLEGDEFPDVSDFDLDDISEIDAGGEWRGSA
AGSGSLSS*
back to top

mRNA from alignment at Ecto-sp13_S_contig12777:1365..4839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12777.2296.1 ID=mRNA_Ecto-sp13_S_contig12777.2296.1|Name=mRNA_Ecto-sp13_S_contig12777.2296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3475bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12777:1365..4839- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCGAGCCAACCACCGGCAGCGTCGATTGGCATCGAGTCGCAACAGC
CAAAGTGTCCAAGATTGAACGAGAGGGAGACCTGCAGACACTCAGACAGT
TTCTTCCGGACGTAGCCGTCGGAAAGGTAGACGATGATGACAACTTCGAC
ACCAATCCCGGCCTCTTGAACGCGTTTCGACTGGCGCAGCTTCAAGCGCA
GTACGTGCTCCACTGCCAGCAGGTAAAAGCGCCCCTTCGTGTTTTCCCGA
CTTTCGCGAGCTTGGTGGGTGGTGTTGACTGTTGGTGGAATGGAGCAGGG
GGTTCGGTCGTGCCATGAGCCTGAACGCGCTCTCTAAACCTACTGAATAC
TGCACTTCCAAATGATCTCCCACGTAGGACACAACCACCCACACACAATG
GCACACTGGATGATCTTGATTTAGAAGCCCAAATATCACCGGGGTTGTTT
TCTTGCCTAGTGGAGTACACGGTAAATGCACAGTGCTTGACACGAACCAT
GTCCTTGGAAGGTTGCGGTGCTGTGTGGTGTGGAGATCGCACCGCATGAT
ACGTTCTGACAATGGTCCATCACCTACGAAGTGATGAGCCATTCAGAACA
CGACATGAGCTGGAAGTGGTACCAGAGGCACCGTGGAGACCTGTTGTGCC
ACTTCCAACCTGAACGGCAAGCTGCTAGCTCTCCTTTTGCGCCCGGTTTC
GGTCGTTTTACGTGCTGTAGGTCTTGCAACGGCAGCTCGTCAACCTGCAA
ACGGCAGTGGCTGGCATGGAGTTGGAGACGGAGGGGAACTTGCAGGGAAC
CAAGGCAATGAAGAACAGTGCGCGCCTCCTTCGAAAGGAAAACCGAAAGC
AGGTTAAACAGAAAGCAGAAAGACTTGAGCTATCGCCGAGAAGAACAACT
CTTACTGTTTTGTTCGTGTCGAAGCCCCTGTTTAGTGTTGCCGGGAGCTG
GTGAAGAGGTTTGCCGTTAGACCTATTGTGAAGTAAATACGTATCGCTCC
CCGGCTTGTCGAACAGGGGTTGTCGGCCCGCTTCGGCCTTCTAGTTTCTT
GTCTAGCCCAAGAACACAACTCATCGCTCGCTTTGCCAAAGTCCCGGACG
TGCACACCCTACTGTAGCAGCGACTAAAAACGTTCGGTTTTGAGTAACGG
AAGACCAACCGAGACGAAGCCGACATCTTGCATGTCTGACTCTCAACGGT
ATGAACAACGATGATCTTGCGGAACCCCCTCTCCGCCCGGCCGCGTCAGG
ACAAGATCATCAACGGCTACGCGGCGATGCTAAGAATTCATAATCCAGGT
CTGGCTTCGAAGGTGTTCTTGGACGACAAGGGAAGGCTAAAGGTTCGCAG
GTTGGACGACGCCGCTCGACGTCGGGATCACCGTGGGAGGCGTCCAGAGA
GACGAAACCGTCGCCGTAACTATCGAGAGAGAAGGGTCGACACTACAACG
GGAGACGATGAAACGGTGAGTGGATGTTCATATGACAATCTTTTCTGTAT
TCCTGCTTTGGTGCTGTCGATAGTGAGCGAGGTAGCCCTCCTATCGTAGG
GTTGTGATCTGATCCTGCAAAGGTGGGTTCTTGTCTGTCATCGTTGGGCG
ACTTCGGCCATTGTTGGGATGTTGGCGTTAGCGCGAGGATTTTCAAACAA
GGACGCTCGTGGAGGCGCAAGTGGAAACCACATTGTGCGAAGGCCAAATG
CTGTCGACTGCCTGCATCCGCCGCCGTAGCATAGCATTTATCTCGAGTGC
GACAATTCAGACTGCGCAAGGCAACAGGTCGCAAAAACAACGTTTTCGCT
GACGTAGACGATTCCACCTACCGCATAGGCTCGCTTGCGGGCTATCCCTG
CACCATGGTCGGCGAAAAAGCCTTGAATATGCGCGTTGACATCATTTTTT
GTTTGAGCGGATGCCACTTGCAGTGCCCCCAAGACAAGCGGTACTTACCA
TGCACTGGAAAGGTGATCACATGAGTCAATTCATGCGCGAAGTTGCTCCA
ACCCCCCTGCTTCCCTCTCCCCGCCCATGGGGGCACCGCTGCTGCGACCT
GCCGCACCTTGGGGACAGCCAAGCAACGAAGCACAGCAAGGGGCTTTTCC
AGCCGGCTCTGCTTTCTCTCAGGGGAACGGCAGCGATTGGGCAGAAGCAG
GGGCCCCCGCTCCAAGAATCGGCAGGGGGCCTCGACCTAGCAGCACCCCC
ATCACTGCAGCTGTCGAGTCATTCCACTACCGAGACAACGGCTTCTCCCT
GGATAACGGCCGGGAGCAGGGTGAGGGTCGCGTGGCGGCACCGACCGACA
TTCGGGAGGCACTTTTGGTAGAAGGGGGTCGGTCTCCGGACGTGAGGGAT
AGCATCGGTGAACGCGTAGAGTCCCTTGGTGCTACTACTGCCCGCGGCGG
CGGCGGTCGTGGAGATGTCACTCACGGCGGCACTCGACTGGACCCTGAAC
GGCAGGACTCATGGGCGGCAGGCTCGTCCTTGTCTCGCGGTAGGGAGGGC
TTCGGGGTCGAGCCGCCGGCACCCCGAGTTGGTGGGTCGAGCGGTGCGGC
GGGGGCACGTCCAGGAAGCGGCGCCGGCGACGGCAGCACCCTTAGCTTAG
CTGGAACAGATCCTTGCACTGGCAACCGGCCACTTGTGGTAGCAGGAGCG
GGCGGAAAGAGAGGTAGCTCTGGCGTCAACGCCGAAGTCTACGCCGGGTC
ATCTACGGCCGGACCAGCAACGGGCCCCCGGGCGAGCCGTTCTCAAGGCG
TTGATTCTGTGGTGGGCTTGAACGCTGGGGGCGTTGCGAACGACGACAGT
CTCGCCTTCGATGGATGGAGGGGGACAGGCTCCGGTTCTCCAATGCGCCG
GGGCGGAACTTCTACATCGGGCGAGGAGTTCCATGGTGACAGGCGTGTGT
CCGGGGAGGGCCTGCGTGGGGTCGACCGCTCGCCGAGAGTGGTGACCGTT
GCGGTCAAGCCGAAAAAGACTCCGCCGGCTTCGGCTGGAGAGGGACGAGA
GGGACACAGCACGTCACCGCCCCCGCCGCAGCCACGACATCGTCGATCAG
AAGCTAACGATAGCGAGACCGCCTTGTCTGTCCAGGCCGATGGCCGTGGT
GAAGCCTCCATGGTGAGGCTAGACGCGGAAGCCATACGCTGCGAGAACGA
GAGAAGGAAAATGGGAACTTTTTCTGAGAACAAAACGACGGCTGGGCACA
GCAGTGAGCGGCCGACCACCTTGAGCGGTGAGGTGGACGTGGCGGGGGCT
GACACCGCAAGGCTCCCACGGAGTGGTGGGACCAAACTGACAAAGGGGAA
TCTTGACGATACCGTTCCCGCTTCTCCGTCTCTCGTCACGGATGCAGCAA
GACTGGGTCTAGAGGGGGACGAGTTTCCTGACGTGTCGGACTTCGACTTG
GACGACATCTCGGAGATTGATGCCGGCGGAGAATGGCGAGGAAGTGCTGC
TGGGTCAGGGTCCCTGTCTTCTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12777:1365..4839-

>mRNA_Ecto-sp13_S_contig12777.2296.1 ID=mRNA_Ecto-sp13_S_contig12777.2296.1|Name=mRNA_Ecto-sp13_S_contig12777.2296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1977bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12777:1365..4839- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCGAGCCAACCACCGGCAGCGTCGATTGGCATCGAGTCGCAACAGC
CAAAGTGTCCAAGATTGAACGAGAGGGAGACCTGCAGACACTCAGACAGT
TTCTTCCGGACGTAGCCGTCGGAAAGGTAGACGATGATGACAACTTCGAC
ACCAATCCCGGCCTCTTGAACGCGTTTCGACTGGCGCAGCTTCAAGCGCA
GTACGTGCTCCACTGCCAGCAGGTCTTGCAACGGCAGCTCGTCAACCTGC
AAACGGCAGTGGCTGGCATGGAGTTGGAGACGGAGGGGAACTTGCAGGGA
ACCAAGGCAATGAAGAACAGTGCGCGCCTCCTTCGAAAGGAAAACCGAAA
GCAGGACAAGATCATCAACGGCTACGCGGCGATGCTAAGAATTCATAATC
CAGGTCTGGCTTCGAAGGTGTTCTTGGACGACAAGGGAAGGCTAAAGGTT
CGCAGGTTGGACGACGCCGCTCGACGTCGGGATCACCGTGGGAGGCGTCC
AGAGAGACGAAACCGTCGCCGTAACTATCGAGAGAGAAGGGTCGACACTA
CAACGGGAGACGATGAAACGCCAAGCAACGAAGCACAGCAAGGGGCTTTT
CCAGCCGGCTCTGCTTTCTCTCAGGGGAACGGCAGCGATTGGGCAGAAGC
AGGGGCCCCCGCTCCAAGAATCGGCAGGGGGCCTCGACCTAGCAGCACCC
CCATCACTGCAGCTGTCGAGTCATTCCACTACCGAGACAACGGCTTCTCC
CTGGATAACGGCCGGGAGCAGGGTGAGGGTCGCGTGGCGGCACCGACCGA
CATTCGGGAGGCACTTTTGGTAGAAGGGGGTCGGTCTCCGGACGTGAGGG
ATAGCATCGGTGAACGCGTAGAGTCCCTTGGTGCTACTACTGCCCGCGGC
GGCGGCGGTCGTGGAGATGTCACTCACGGCGGCACTCGACTGGACCCTGA
ACGGCAGGACTCATGGGCGGCAGGCTCGTCCTTGTCTCGCGGTAGGGAGG
GCTTCGGGGTCGAGCCGCCGGCACCCCGAGTTGGTGGGTCGAGCGGTGCG
GCGGGGGCACGTCCAGGAAGCGGCGCCGGCGACGGCAGCACCCTTAGCTT
AGCTGGAACAGATCCTTGCACTGGCAACCGGCCACTTGTGGTAGCAGGAG
CGGGCGGAAAGAGAGGTAGCTCTGGCGTCAACGCCGAAGTCTACGCCGGG
TCATCTACGGCCGGACCAGCAACGGGCCCCCGGGCGAGCCGTTCTCAAGG
CGTTGATTCTGTGGTGGGCTTGAACGCTGGGGGCGTTGCGAACGACGACA
GTCTCGCCTTCGATGGATGGAGGGGGACAGGCTCCGGTTCTCCAATGCGC
CGGGGCGGAACTTCTACATCGGGCGAGGAGTTCCATGGTGACAGGCGTGT
GTCCGGGGAGGGCCTGCGTGGGGTCGACCGCTCGCCGAGAGTGGTGACCG
TTGCGGTCAAGCCGAAAAAGACTCCGCCGGCTTCGGCTGGAGAGGGACGA
GAGGGACACAGCACGTCACCGCCCCCGCCGCAGCCACGACATCGTCGATC
AGAAGCTAACGATAGCGAGACCGCCTTGTCTGTCCAGGCCGATGGCCGTG
GTGAAGCCTCCATGGTGAGGCTAGACGCGGAAGCCATACGCTGCGAGAAC
GAGAGAAGGAAAATGGGAACTTTTTCTGAGAACAAAACGACGGCTGGGCA
CAGCAGTGAGCGGCCGACCACCTTGAGCGGTGAGGTGGACGTGGCGGGGG
CTGACACCGCAAGGCTCCCACGGAGTGGTGGGACCAAACTGACAAAGGGG
AATCTTGACGATACCGTTCCCGCTTCTCCGTCTCTCGTCACGGATGCAGC
AAGACTGGGTCTAGAGGGGGACGAGTTTCCTGACGTGTCGGACTTCGACT
TGGACGACATCTCGGAGATTGATGCCGGCGGAGAATGGCGAGGAAGTGCT
GCTGGGTCAGGGTCCCTGTCTTCTTGA
back to top