mRNA_Ecto-sp13_S_contig12776.2295.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12776.2295.1
Unique NamemRNA_Ecto-sp13_S_contig12776.2295.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12776.2295.1 vs. uniprot
Match: D7FSQ1_ECTSI (Adhesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ1_ECTSI)

HSP 1 Score: 511 bits (1316), Expect = 3.990e-181
Identity = 247/252 (98.02%), Postives = 252/252 (100.00%), Query Frame = 1 
Query:    1 QVVHGGVLNVEEGGKARFLSSVSMDGVGVDTVDLADMKHGGCVYNQGYVRFEGEFYANGCETVSTIDEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFCGNWPWTSNGAEPGSDGGAIYSDGKVSFFEDALFTNNEADEGGALWIGVSGVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVKSVLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDNFIVNN 756
            QVVHGGVLNVEEGGKARFLSSVSMDG+GVDTVDLADMKHGGCVYNQGYVRFEGEFYANGCETVSTI+EYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFCGNWPWTSNGAEPGSDGGAIYSDG+VSFFEDALFTNNEADEGGALWIGV+GVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVK+VLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDNFIVNN
Sbjct:  110 QVVHGGVLNVEEGGKARFLSSVSMDGIGVDTVDLADMKHGGCVYNQGYVRFEGEFYANGCETVSTIEEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFCGNWPWTSNGAEPGSDGGAIYSDGEVSFFEDALFTNNEADEGGALWIGVTGVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVKNVLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDNFIVNN 361
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BLAST of mRNA_Ecto-sp13_S_contig12776.2295.1 vs. uniprot
Match: A0A6H5L171_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L171_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 8.240e-88
Identity = 146/252 (57.94%), Postives = 174/252 (69.05%), Query Frame = 1 
Query:    1 QVVHGGVLNVEEGGKARFLSSVSMDGVGVDTVDLADMKHGGCVYNQGYVRFEGEFYANGCETVSTIDEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFC-GNWPWTSNGAEPGSDGGAIYSDGKVSFFEDALFTNNEADEGGALWIGVSGVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVKSVLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDNFIVN 753
            Q V+GGVLNV   G ARFL SV M  VGV+TV+   M+HGGC+YN+GYVRFEG F A+ C   ST ++Y     GNG  +WNG DAKVVFKEAVEM  C G      NG   G +GGA+Y++GK+SF+EDA+FT+NE DEGGA+WIG +GVVKFLK +KATF  N+    GG I N GVLVMRNTA F  G S   SGG I+ G ASEMVF+K V F G  +  HG AI   Y N+EFLP+DATY  N + N
Sbjct:   12 QAVNGGVLNVAPEGYARFLDSVKMYSVGVNTVEDDTMQHGGCIYNEGYVRFEGTFTADACRVGSTAEKY----PGNGGALWNGPDAKVVFKEAVEMTNCYGKKTEDYNGRYTGLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGGTGVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDGVSGS-SGGAINAGDASEMVFIKHVNFIGNSADAHGGAIATTYPNIEFLPQDATYEGNVLQN 258
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BLAST of mRNA_Ecto-sp13_S_contig12776.2295.1 vs. uniprot
Match: D7G627_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G627_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 2.580e-85
Identity = 144/252 (57.14%), Postives = 173/252 (68.65%), Query Frame = 1 
Query:    1 QVVHGGVLNVEEGGKARFLSSVSMDGVGVDTVDLADMKHGGCVYNQGYVRFEGEFYANGCETVSTIDEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFC-GNWPWTSNGAEPGSDGGAIYSDGKVSFFEDALFTNNEADEGGALWIGVSGVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVKSVLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDNFIVN 753
            + V+GGVLNV   G ARFL SV M  VGV+TV+   M+HGGC+YN+GYVRFEG F A+ C   ST ++Y     GNG  +WNG DAKVVFKEAVEM  C G      NG   G +GGA+Y++GK+SF+EDA+FT+NE DEGGA+WIGV+ VVKFLK +KATF  N+    GG I N GVLVMRNTA F  G S   SGG I+ G  SEMVF+K V F G  +  HG AI   Y N+EFLP+DATY  N + N
Sbjct:  118 EAVNGGVLNVAPEGYARFLDSVKMYSVGVNTVEDDTMQHGGCIYNEGYVRFEGTFTADACRVGSTAEKY----PGNGGALWNGPDAKVVFKEAVEMTNCYGKKTEDYNGRYTGLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGVTAVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDGVSGS-SGGAINAGDVSEMVFIKHVDFIGNSADAHGGAIATTYPNIEFLPQDATYEGNVLQN 364
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BLAST of mRNA_Ecto-sp13_S_contig12776.2295.1 vs. uniprot
Match: D8LU56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU56_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.210e-80
Identity = 138/247 (55.87%), Postives = 169/247 (68.42%), Query Frame = 1 
Query:    1 QVVHGGVLNVEEGGKARFLSSVSMDGVGVDTVDLADMKHGGCVYNQGYVRFEGEFYANGCETVSTIDEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFCGNWPWTSNGAEPGSDGGAIYSDGKVSFFEDALFTNNEADEGGALWIGVSGVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVKSVLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDN 741
            Q V+GG+LNV +GGKARFL SV+M+ VGV +V    M HGGCVYN+G +RFEG F A+GC+TVS+  +    + G+G G+WNG   K+VFKEAVEM  CG      +    G DGGAIY+DGKVSF+EDA FT+NEADEGGA+ IGV G +KFLK AK TF  N+  G+GG INN G LV+RNT  F+ G +  GSGG I  G  S M+FVK V F    +  HG AI   Y N++ LPEDATY  N
Sbjct:  105 QAVNGGLLNVADGGKARFLDSVAMNDVGVLSVSEEAMVHGGCVYNEGLIRFEGTFSADGCKTVSS--DTASVIPGDGGGLWNGPGGKIVFKEAVEMKNCGERTGLRSWRSQGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLKKAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYA-GGSGGAIYAGDFSSMLFVKHVDFLDNTAGAHGGAIATSYPNIDDLPEDATYQGN 348
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12776.2295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSQ1_ECTSI3.990e-18198.02Adhesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A6H5L171_9PHAE8.240e-8857.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G627_ECTSI2.580e-8557.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU56_ECTSI1.210e-8055.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12776contigEcto-sp13_S_contig12776:162..3069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size756
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionPectin lyase fold/virulence factor
Ec32 orthologEc-03_002980.1
Cds size756
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462683.2685099-CDS-Ecto-sp13_S_contig12776:161..2911681462683.2685099-CDS-Ecto-sp13_S_contig12776:161..291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12776 162..291 -
1681462683.2776244-CDS-Ecto-sp13_S_contig12776:1041..12531681462683.2776244-CDS-Ecto-sp13_S_contig12776:1041..1253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12776 1042..1253 -
1681462683.2860556-CDS-Ecto-sp13_S_contig12776:1698..18061681462683.2860556-CDS-Ecto-sp13_S_contig12776:1698..1806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12776 1699..1806 -
1681462683.2943323-CDS-Ecto-sp13_S_contig12776:2126..22941681462683.2943323-CDS-Ecto-sp13_S_contig12776:2126..2294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12776 2127..2294 -
1681462683.3024514-CDS-Ecto-sp13_S_contig12776:2931..30691681462683.3024514-CDS-Ecto-sp13_S_contig12776:2931..3069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12776 2932..3069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12776.2295.1prot_Ecto-sp13_S_contig12776.2295.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12776 162..3069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12776.2295.1

>prot_Ecto-sp13_S_contig12776.2295.1 ID=prot_Ecto-sp13_S_contig12776.2295.1|Name=mRNA_Ecto-sp13_S_contig12776.2295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp
QVVHGGVLNVEEGGKARFLSSVSMDGVGVDTVDLADMKHGGCVYNQGYVR
FEGEFYANGCETVSTIDEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFCG
NWPWTSNGAEPGSDGGAIYSDGKVSFFEDALFTNNEADEGGALWIGVSGV
VKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCI
SCGPASEMVFVKSVLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDNFIV
NN
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mRNA from alignment at Ecto-sp13_S_contig12776:162..3069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12776.2295.1 ID=mRNA_Ecto-sp13_S_contig12776.2295.1|Name=mRNA_Ecto-sp13_S_contig12776.2295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2908bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12776:162..3069- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTCCACGGCGGCGTGCTGAACGTTGAGGAAGGCGGCAAGGCCCG
CTTCCTCTCCTCGGTGTCGATGGACGGCGTCGGCGTGGACACCGTAGACC
TCGCGGACATGAAGCACGGGGGTTGCGTTTACAACCAGGTACGGAAAGAT
ACATACTCCGCGGAGGACTTGTTTGTCCCTCTGCCGATATGTGTAACGTA
CCACACGATAAACAATTCAATAATTGTAGGTTGTGTATATGTTTGGCTTG
GGCATCGCTTATTTTTCAGTTCGGCGGACGTAGTAGAGGATACTCAAAGT
TTGGTGGAGGGACAATGTTCGAGAGTTTTTCGTAGAGAGAGACGCGGTCA
TTCGGAATCACCTTCGGATGGCTTGTACCAAATCGAGAGCTCGTGACCTC
GATTTGAGGCGCACACTCTGCTTTGTTGGCTGTTGCCCGTGCATAAGCCG
AGCCAGGCGCATCCCGTGCCGGCGATATTCGCCGGCGGCGACCACATTGT
AAGTACAACCCGTGGACCGCCCGTGGTCCTGCTTAAGGCCGCCATGGTCC
AAGGCAAAGCACCGACCTTGTATATGGGCACTATTCAGAGAACGAAACAA
CGTGAATAATTCATCTGTGCCAACCGATGTCACCGGCCTTCAACAGGGCG
ACCGGTCTTAAACAAGCGCCCTTTAAACCAACCCTCTACTTCTACTGTAA
GTAGCCCCGATCCTTATATGCATGGGCGCTACAATATGCCGGCCGTGACA
CGAGACTTCGAACCTCCTCGCCCAGGGCTACGTGCGATTCGAGGGCGAGT
TCTACGCCAACGGCTGCGAGACCGTGTCGACCATCGACGAATACCGCGTG
GCCATGGCCGGCAACGGTGCGGGAATCTGGAACGGGAAGGACGCCAAGGT
GGTGTTCAAGGAAGCGGTCGAGATGGACTTCTGCGGCAACTGGGTGAGTC
AGTCCCGTACCGCGGTATCTATCCGGAACGGTGTCGGTTCATCAGAGATA
TGTACCGTTGTCTTGGTCTCGCCGTAGAGGTCGTTCTTCGATTCCATTGG
CCCACACACCAGTCGCCAGGCGGCAAAACCCGCGGTGCCGCCTTTTTCGT
GGGACGGGTTGAAGAACGCAGAATTTACGTACTTCTTCCACAAGAACGCA
CAACAGCGGCGGCTTCAACCGCAACAGCGCAAGCTCCGTCCCGGTCACCC
CGATGGTCTCGGGGCAAGCGCTCAATATGGATCCCGTTCCGTTCCTTTTG
TTTTTCTTCTCAGCCCTGGACTTCCAACGGTGCCGAGCCGGGCTCGGACG
GAGGGGCCATTTACTCAGACGGCAAGGTTTCCTTCTTCGAAGACGCTCTT
TTCACGAACAACGAGGCGGACGTGAGTGTCGGGTGTCTGTTTTTTACTCC
CGTAGCGAATGCCGGCGGGGCGGCACGGCTGTACACGGGGGGAAAGTGAA
GGGAAACAATCCCTCGAATTTGAAGGCTGTGGGAGAAGCGGACAGTCAAA
CAAAGGTGCTCCGTTGTTTTTGTGAAGGCTGCCTCTGTTTGGGTCCGGCT
GGGTTGTTGTTCCCGATCCAGACACAGAGGAGTCGACACGAATGGGATGT
GCCCCTGCGTGCACGCGTTGCTCTCTGTAAACTGCTTGCTGCTGTGTCGC
GGGAACCTTGGAACCGAGATAAAGCGGGCTCGAGGAACTGGTTGGACGGC
CTGCATTCGTGTGCATGCCACTTAAAGTCCCCCGGTCGACCACGTTGTGT
AACCTTTACCCCCTTATTGATTTTTCCGTTTTATGGGGTGTACGGGTTGT
TGTCGGCTTTCCTCAGGAGGGAGGGGCGCTGTGGATCGGCGTTTCGGGCG
TGGTCAAGTTCCTGAAATCGGCCAAGGCCACCTTCCAGTCCAACTCCGGT
CCCGGCAACGGCGGCACGATCAACAACTACGGCGTGCTGGTGATGAGGAA
CACCGCCTCCTTCAACCAGGGCCGGTCGACCGACGGCAGCGGCGGGTGCA
TCTCGTGCGGCCCCGCCTCGGAGATGGTGTGAGTGGCCCCCTCCCTGGGT
TTTTGTTGTCGTTGGGACTGCTGACAGACACGACGGTATTTTAGCTTTTA
GGAAATACATACACAGAATCAGAGAGATACTACCCGTTCGAATTACGAGC
ATAAGCACAGCAGTCGAGGGTGGAAGGGGATGGGGTTGAAGTCTTTTCTG
TGAATGGGGGTAGTTTATCGGGGCTCCGTCTTGAGGGCGGTCTGTTGATA
ACTTTTTGGTGATGCGAAAACTAAGGTTTTATCTTATTACCACTTCTGCC
GCTGCTACTACTGCTAGATACACACATCTTTGGTTTCGTATCTACGTTTG
TTTTCTGGCCATCCATCTACACATAGACCGGATTCTCGCTCGATGGTTTC
CGCTATGGCAGCGTTCGTCCGAATGGCCTCCGCAGATGGTCCACTCACGC
GTCGGGAGGTGAGTGGTAGCAGCTGTTGTAGCTGATATCCCCCGCGGGGA
TCTTGAACGGGACGTCTGTAAGTTAACCGCGTACCTTCAAGTCTCGGAGG
GTTGTATGTTTGACACGAGGAAAGCATCACTAGACAACGAGGATACTGAA
GAAACTGCTCGTCATCGACTGCACTGCAATCGCCTACAAATGGCAGCGAA
GCTTTCGTGAACCGGTATGCCCAAACTTTCGGCACTCGATTGGCACCCCT
AAGGCATGAATTGTTAGTTCCTCCGTCCTCCCTCGTTCGCGTGGTCCGAC
CGTCTCCGAAACAAACGCGGTCGGTCAGGTTCGTCAAGAGCGTGCTCTTC
GACGGCTGCCAATCGACGGAGCACGGCGCAGCGATCTACATCGACTACGA
CAACGTTGAGTTCCTTCCGGAGGACGCGACCTACACCGACAACTTCATCG
TCAACAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12776:162..3069-

>mRNA_Ecto-sp13_S_contig12776.2295.1 ID=mRNA_Ecto-sp13_S_contig12776.2295.1|Name=mRNA_Ecto-sp13_S_contig12776.2295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12776:162..3069- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTCCACGGCGGCGTGCTGAACGTTGAGGAAGGCGGCAAGGCCCG
CTTCCTCTCCTCGGTGTCGATGGACGGCGTCGGCGTGGACACCGTAGACC
TCGCGGACATGAAGCACGGGGGTTGCGTTTACAACCAGGGCTACGTGCGA
TTCGAGGGCGAGTTCTACGCCAACGGCTGCGAGACCGTGTCGACCATCGA
CGAATACCGCGTGGCCATGGCCGGCAACGGTGCGGGAATCTGGAACGGGA
AGGACGCCAAGGTGGTGTTCAAGGAAGCGGTCGAGATGGACTTCTGCGGC
AACTGGCCCTGGACTTCCAACGGTGCCGAGCCGGGCTCGGACGGAGGGGC
CATTTACTCAGACGGCAAGGTTTCCTTCTTCGAAGACGCTCTTTTCACGA
ACAACGAGGCGGACGAGGGAGGGGCGCTGTGGATCGGCGTTTCGGGCGTG
GTCAAGTTCCTGAAATCGGCCAAGGCCACCTTCCAGTCCAACTCCGGTCC
CGGCAACGGCGGCACGATCAACAACTACGGCGTGCTGGTGATGAGGAACA
CCGCCTCCTTCAACCAGGGCCGGTCGACCGACGGCAGCGGCGGGTGCATC
TCGTGCGGCCCCGCCTCGGAGATGGTGTTCGTCAAGAGCGTGCTCTTCGA
CGGCTGCCAATCGACGGAGCACGGCGCAGCGATCTACATCGACTACGACA
ACGTTGAGTTCCTTCCGGAGGACGCGACCTACACCGACAACTTCATCGTC
AACAAC
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