prot_Ecto-sp13_S_contig12768.2291.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12768.2291.1
Unique Nameprot_Ecto-sp13_S_contig12768.2291.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length577
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12768.2291.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 670 bits (1729), Expect = 4.820e-216
Identity = 498/582 (85.57%), Postives = 508/582 (87.29%), Query Frame = 0 
Query:    1 GVAPAGDHGHPEAGGXXXXXXXXXXXXXXXXVPGVSMLATDGSTVDLTQIAMLIIRLLAQQQLFLAFLEPVDLVALPLYGALIKRPMDLQTMYYKVQFGSFGGLHPSAVPNTDPPPVEDRGPADSHHEVDVLAGGPGAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEVSDGVAATPATPAELHDGSSSSNGA--LGVQDNGG-ADDLRGAAGDETGVMPLDXXXXXXXXXXXXXXXXXXFGXXXXGQQQHVSVSDIAGKDVSGGGGRGSGSRTNESGPLPATPAAGGHAEGNEEQEEQSLSVVATGVPFATATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWVAAEHFKNQLDRLYKERLLSVVQERTPALPRRTMEDFLATPPPWEVLCGACGANADPEAKIKKTPIKKGKGSKKXXXXXXXXXXXXX--EVWPALRCFICRRPRHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGLPPRIPKHXXXXXXXXXXXXXXXXXXXXXXXXVDLIPMPPKDALQPGAKEEHRLEV 577
            GVA AGDHGHPEAGGXXXXXXXXXXXXXXXXVPGVSMLATDGSTVDLTQIAMLIIRLLAQQQLFLAFLEPVDLVALPLYGALIKRPMDLQ+MYYKVQFGSFGGLHPSAVPNTDPP VED GPADSHHEVD LAGGPGAAR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EVSDG+AATP                  LGVQ+NGG  DD RG AGDETG +P+D                  FG    GQQQ+VSVSD AGK+VSGG     GSR +ESGPLPA PA GGHAEG EEQEEQ +SVVATGVPFATATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWVAAEHFKNQLDRLYKERLLSVVQERTPALPR+TMEDFLATPPPWEVLCGACGANADPEAKIKKTPIKKGKGSKKXXXXXXXXXXXXX  EVWPALRCFICRRPRHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGLPPRIPKH XXXXXXXXXXXXXXXXXX      DLIPM PKDALQPGAKEEH LEV
Sbjct:  197 GVAAAGDHGHPEAGGXXXXXXXXXXXXXXXXVPGVSMLATDGSTVDLTQIAMLIIRLLAQQQLFLAFLEPVDLVALPLYGALIKRPMDLQSMYYKVQFGSFGGLHPSAVPNTDPPLVEDGGPADSHHEVDALAGGPGAARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EVSDGIAATPXXXXXXXXXXXXXXXXXXLGVQNNGGDPDDARGGAGDETGAVPVDPATATEVYDGGGMVSGGGFGYDDGGQQQYVSVSDNAGKNVSGG----VGSRADESGPLPAAPATGGHAEGTEEQEEQGVSVVATGVPFATATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWVAAEHFKNQLDRLYKERLLSVVQERTPALPRQTMEDFLATPPPWEVLCGACGANADPEAKIKKTPIKKGKGSKKXXXXXXXXXXXXXXXEVWPALRCFICRRPRHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGLPPRIPKHQXXXXXXXXXXXXXXXXXX------DLIPMQPKDALQPGAKEEHPLEV 767
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BLAST of mRNA_Ecto-sp13_S_contig12768.2291.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 511 bits (1316), Expect = 4.200e-158
Identity = 310/380 (81.58%), Postives = 316/380 (83.16%), Query Frame = 0 
Query:  212 SGEVSDGVAATPATPAELHDGSSSSNGALGVQDNGG-ADDLRGAAGDETGVMPLDXXXXXXXXXXXXXXXXXXFGXXXXGQQQHVSVSDIAGKDVSGGGGRGSG-------------SRTNESGPLPATPAAGGHAEGNEEQEEQSLSVVATGVPFATATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWVAAEHFKNQLDRLYKERLLSVVQERTPALPRRTMEDFLATPPPWEVLCGACGANADPEAKIKKTPIKKGKGSKKXXXXXXXXXXXXXEVWPALRCFICRRPRHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGLPPRIPKHXXXXXXXXXXXXXXXXXXXXXXXXVDLIPMPPKDALQPGAKEEHRLEV 577
            SGEVSDGV ATPAT AE HD SSSSNG LGVQ+NGG  +DLRG AGDETGV+PL                   FG   X QQQHV VS+ AGKDVSG                    SR NESGPLPA PAAGGHAEGNEEQEEQ LSVVAT VPFATATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWVAAEHFKNQLDRLYKERLLSVVQERTPALPR+TMEDFLATPPPWEVLC ACGANADPEAKIKKTPIKKGKGSK XXXXXXXXXXXX EVWPALRCFICRRPRHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGLPPRIPKHXXXXXXXXXXXXXXXXXXXXX    D+IPMPPKDALQPGAKEEHRLEV
Sbjct:  988 SGEVSDGVVATPATAAEPHDVSSSSNGGLGVQNNGGDPNDLRGGAGDETGVVPLGPATATAVYDGGGVVNGGGFGYDGXXQQQHVGVSNNAGKDVSGXXXXXXXXXXXXXXXXXXXXSRANESGPLPAAPAAGGHAEGNEEQEEQGLSVVATAVPFATATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWVAAEHFKNQLDRLYKERLLSVVQERTPALPRQTMEDFLATPPPWEVLCCACGANADPEAKIKKTPIKKGKGSKXXXXXXXXXXXXXEEVWPALRCFICRRPRHVECLLLPGQARKRHGVWTCPTCKHQPFSPLGLPPRIPKHXXXXXXXXXXXXXXXXXXXXX----DVIPMPPKDALQPGAKEEHRLEV 1363
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12768.2291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8B2_9PHAE4.820e-21685.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K5_ECTSI4.200e-15881.58Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 368..387
score: 30.65
coord: 76..92
score: 48.47
coord: 62..75
score: 32.76
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 58..101
e-value: 1.2E-4
score: 22.0
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 59..101
score: 9.256
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 357..416
e-value: 2.5E-7
score: 32.2
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 40..104
e-value: 9.5E-8
score: 33.7
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 364..404
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 44..99
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 480..517

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12768contigEcto-sp13_S_contig12768:195..4702 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12768.2291.1mRNA_Ecto-sp13_S_contig12768.2291.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12768 193..4702 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12768.2291.1 ID=prot_Ecto-sp13_S_contig12768.2291.1|Name=mRNA_Ecto-sp13_S_contig12768.2291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=577bp
GVAPAGDHGHPEAGGGGGATGEPAGVGVGVGVPGVSMLATDGSTVDLTQI
AMLIIRLLAQQQLFLAFLEPVDLVALPLYGALIKRPMDLQTMYYKVQFGS
FGGLHPSAVPNTDPPPVEDRGPADSHHEVDVLAGGPGAARAATPPAASTA
PPPFGGGVLHDGTGTAVVATGSTVAAAAAAAAAAAATAAAPRGEDDEIDG
FFSSVAAAAAASGEVSDGVAATPATPAELHDGSSSSNGALGVQDNGGADD
LRGAAGDETGVMPLDPATATAVYDGGGVVNGGRFGHDGGGQQQHVSVSDI
AGKDVSGGGGRGSGSRTNESGPLPATPAAGGHAEGNEEQEEQSLSVVATG
VPFATATAPFDHVSFFRDMKLIWKNAQKFNHDGSPLWVAAEHFKNQLDRL
YKERLLSVVQERTPALPRRTMEDFLATPPPWEVLCGACGANADPEAKIKK
TPIKKGKGSKKAAAAAAAAAAAEEEVWPALRCFICRRPRHVECLLLPGQA
RKRHGVWTCPTCKHQPFSPLGLPPRIPKHHQQQPPTSPRKATGGGGGGGG
GGGVDLIPMPPKDALQPGAKEEHRLEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf
IPR011011Znf_FYVE_PHD