mRNA_Ecto-sp13_S_contig12761.2289.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12761.2289.1
Unique NamemRNA_Ecto-sp13_S_contig12761.2289.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12761.2289.1 vs. uniprot
Match: A0A6H5L154_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L154_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 1.050e-79
Identity = 137/162 (84.57%), Postives = 144/162 (88.89%), Query Frame = 3 
Query:   81 MATKPSSHDGRRFTRLFGYVLAEFSPATRQRLDLSSCSPMSDASNNNLSIISKGRCCSAAVAIDAETTARLRGECSSRDVPLESALLASLYLAAARAVGKEGKVPRAASGGNRVHEGSISGQTNDAVRLQRALVLGSVSVVMALLSGSVDSKVLRYFCSFYA 566
            MAT  SSHDG+RF RLFGYVLAEF PATRQRLDLS CSP+ DASNNNLSII+ GRC SAAVAID ETTARLRGECSSR VPLESALLASLYLAAARAVG+EGK PR AS GN VHEG+I  +TNDAVRLQRALVLG VSVVMALLSGSVD K+LRYFCSFYA
Sbjct:    1 MATYSSSHDGQRFIRLFGYVLAEFPPATRQRLDLSPCSPLFDASNNNLSIINSGRC-SAAVAIDTETTARLRGECSSRGVPLESALLASLYLAAARAVGEEGKFPRVASEGNGVHEGNIPRRTNDAVRLQRALVLGVVSVVMALLSGSVDGKILRYFCSFYA 161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12761.2289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L154_9PHAE1.050e-7984.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12761contigEcto-sp13_S_contig12761:1861..2577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size717
Hectar predicted targeting categoryother localisation
Exons1
Cds size570
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462682.7350974-UTR-Ecto-sp13_S_contig12761:1860..19271681462682.7350974-UTR-Ecto-sp13_S_contig12761:1860..1927Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12761 1861..1927 -
1681462682.7544115-UTR-Ecto-sp13_S_contig12761:2497..25771681462682.7544115-UTR-Ecto-sp13_S_contig12761:2497..2577Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12761 2498..2577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462682.7449691-CDS-Ecto-sp13_S_contig12761:1927..24971681462682.7449691-CDS-Ecto-sp13_S_contig12761:1927..2497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12761 1928..2497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12761.2289.1prot_Ecto-sp13_S_contig12761.2289.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12761 1928..2497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12761.2289.1

>prot_Ecto-sp13_S_contig12761.2289.1 ID=prot_Ecto-sp13_S_contig12761.2289.1|Name=mRNA_Ecto-sp13_S_contig12761.2289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
MATKPSSHDGRRFTRLFGYVLAEFSPATRQRLDLSSCSPMSDASNNNLSI
ISKGRCCSAAVAIDAETTARLRGECSSRDVPLESALLASLYLAAARAVGK
EGKVPRAASGGNRVHEGSISGQTNDAVRLQRALVLGSVSVVMALLSGSVD
SKVLRYFCSFYAIFAGKLSSERCAACLDYIRSPTLASDT*
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mRNA from alignment at Ecto-sp13_S_contig12761:1861..2577-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12761.2289.1 ID=mRNA_Ecto-sp13_S_contig12761.2289.1|Name=mRNA_Ecto-sp13_S_contig12761.2289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12761:1861..2577- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGAAAGTCTACTGCTCTTCCTTGCTCCTTGGGTGGTTCGGTGGGG
GCACCACACGCGCCCGTAACCGAGCAGGAAATGGCGACCAAACCCTCCAG
CCACGACGGGCGGCGGTTTACCCGTCTGTTCGGCTATGTCCTGGCAGAGT
TCTCCCCGGCGACTCGACAGAGGTTGGACCTCTCTTCTTGTTCTCCGATG
AGTGATGCCAGCAACAACAACCTCAGCATTATTAGCAAAGGGAGATGTTG
TTCAGCTGCCGTAGCTATTGATGCAGAGACAACCGCTAGGCTTCGGGGCG
AGTGTTCCTCTCGAGACGTGCCGCTCGAGAGCGCTCTCTTGGCGAGCCTG
TATCTGGCTGCTGCAAGGGCCGTGGGTAAGGAGGGCAAAGTCCCTCGTGC
TGCGTCGGGAGGAAACAGGGTTCATGAAGGCAGTATCTCCGGACAAACCA
ACGACGCCGTCCGGCTGCAAAGAGCTTTGGTTTTGGGTAGTGTCTCCGTC
GTGATGGCCCTCCTTTCGGGCTCGGTGGATTCGAAGGTTTTGCGCTACTT
CTGCTCCTTCTACGCCATCTTTGCAGGCAAGTTGTCGTCTGAACGATGCG
CTGCATGCCTAGACTATATACGTTCGCCTACGCTGGCCAGCGACACATGA
GAGTACGCAGTTGCACACGTTGGCACACCGACTGCCCGCACTGCTGTTCA
TCACGCTTTCTGGAAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12761:1861..2577-

>mRNA_Ecto-sp13_S_contig12761.2289.1 ID=mRNA_Ecto-sp13_S_contig12761.2289.1|Name=mRNA_Ecto-sp13_S_contig12761.2289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12761:1861..2577- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACCAAACCCTCCAGCCACGACGGGCGGCGGTTTACCCGTCTGTT
CGGCTATGTCCTGGCAGAGTTCTCCCCGGCGACTCGACAGAGGTTGGACC
TCTCTTCTTGTTCTCCGATGAGTGATGCCAGCAACAACAACCTCAGCATT
ATTAGCAAAGGGAGATGTTGTTCAGCTGCCGTAGCTATTGATGCAGAGAC
AACCGCTAGGCTTCGGGGCGAGTGTTCCTCTCGAGACGTGCCGCTCGAGA
GCGCTCTCTTGGCGAGCCTGTATCTGGCTGCTGCAAGGGCCGTGGGTAAG
GAGGGCAAAGTCCCTCGTGCTGCGTCGGGAGGAAACAGGGTTCATGAAGG
CAGTATCTCCGGACAAACCAACGACGCCGTCCGGCTGCAAAGAGCTTTGG
TTTTGGGTAGTGTCTCCGTCGTGATGGCCCTCCTTTCGGGCTCGGTGGAT
TCGAAGGTTTTGCGCTACTTCTGCTCCTTCTACGCCATCTTTGCAGGCAA
GTTGTCGTCTGAACGATGCGCTGCATGCCTAGACTATATACGTTCGCCTA
CGCTGGCCAGCGACACATGA
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