prot_Ecto-sp13_S_contig12759.2285.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12759.2285.1
Unique Nameprot_Ecto-sp13_S_contig12759.2285.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length259
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12759.2285.1 vs. uniprot
Match: A0A6H5KUL3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUL3_9PHAE)

HSP 1 Score: 491 bits (1264), Expect = 5.420e-172
Identity = 245/259 (94.59%), Postives = 254/259 (98.07%), Query Frame = 0 
Query:    1 QAEVEKFITADPLTPCVIGFYDEDTDGADVMNYRTAAQRMSQIGVRFGLATEDDILEGLKYKSGRVMAYPAKRFLEDGDRPKQRYPGSGALDPESLQIWVVKVVTPLVGLFTWENGGLYQEIGLPELTAYTKVDLEEDGEHFDAVAATLRKVASAKLPEKRLSYVVANKEDMSSLASRFQFPEPEGEEAPEAVTVGIRTENKFYRMDGKFDEKTVAEFVDAYLNGSLKPTHVEAVDEGMGSAGAGDEIDDEDSDVVVVS 259
             AEVEKFITADPLTPCVIGF+DEDTDGADVMNYRTAAQRMSQ GVRFGLATE+DILEGLKYKSGRVMAYPAKRFLEDG RPKQRYPGSGALDPESLQIWVVKVVTPLVGLFTWENGGLYQEIGLPELTAYTKVDLEEDGEHFDAVAATLRKVASA+LPEKRLSYVVANKED+ SLASRFQFPEPEGEEAPEAVTVGIR+ENKFYRMDGKFDEKTVAEFVDAYLNGSLKPTHVEA+DEGMGS+GAGDEIDDEDSDVV ++
Sbjct:   88 MAEVEKFITADPLTPCVIGFFDEDTDGADVMNYRTAAQRMSQTGVRFGLATEEDILEGLKYKSGRVMAYPAKRFLEDGGRPKQRYPGSGALDPESLQIWVVKVVTPLVGLFTWENGGLYQEIGLPELTAYTKVDLEEDGEHFDAVAATLRKVASARLPEKRLSYVVANKEDVVSLASRFQFPEPEGEEAPEAVTVGIRSENKFYRMDGKFDEKTVAEFVDAYLNGSLKPTHVEAMDEGMGSSGAGDEIDDEDSDVVALT 346
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12759.2285.1 vs. uniprot
Match: A0A7R9UDA9_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDA9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.750e-22
Identity = 73/234 (31.20%), Postives = 118/234 (50.43%), Query Frame = 0 
Query:    1 QAEVEKFITAD--PLTPCVIGFYDEDTDGADVMNYRTAAQRMSQIGVRFGLATEDDILEGLKYKSGRVMAY-PAKRFLEDGDRPKQRYPGSGALDPESLQIWVVKVVTPLVGLFTWENGGLYQEIGLPELTAYTKVDLEEDGEHFDAVAATLRKVASAKLPEKRLSYVVANKEDMSSLASRFQFPEPEGEEAPEAVTVGIRTENKFYRM--DGKFDEKTVAEFVDAYLNGSLKP 229
            +  +E F+ A+     P V+ +  ED + AD+  +   A+  +Q   +F L ++ D++E   Y    +  Y P+       DR + RYPG     P SL+ W+ K    LVGL +WE   LY+++ LP +  +TKVD + + + +D  A  LRKVA     + + S+V+AN +D  S A  F + E + ++      VG+R   + Y M  DGKF    V  F+   ++G L P
Sbjct:   74 EEALEAFLAANNNEAYPAVVAYIAEDAE-ADLELFTQVAEE-NQYSYKFALVSDRDMMETRNYDQLAITVYKPSLDVHPKYDRHRSRYPGRDVSLP-SLERWLAKNAVALVGLRSWETASLYEQLNLPMVMLFTKVDRQRNKKQYDYYANRLRKVAQDY--KGKYSFVIANMDDYKSDAQEFGWSEEDIDQVK--ALVGVRDGKERYPMPADGKFSTDAVKAFMQELVDGKLAP 300
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12759.2285.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUL3_9PHAE5.420e-17294.59Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7R9UDA9_9STRA1.750e-2231.20Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10coord: 112..234
e-value: 3.1E-14
score: 55.2
NoneNo IPR availablePFAMPF13848Thioredoxin_6coord: 23..220
e-value: 1.1E-12
score: 48.3
NoneNo IPR availableGENE3D3.40.30.10coord: 1..111
e-value: 5.9E-15
score: 57.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12759contigEcto-sp13_S_contig12759:879..4500 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12759.2285.1mRNA_Ecto-sp13_S_contig12759.2285.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12759 879..4500 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12759.2285.1 ID=prot_Ecto-sp13_S_contig12759.2285.1|Name=mRNA_Ecto-sp13_S_contig12759.2285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
QAEVEKFITADPLTPCVIGFYDEDTDGADVMNYRTAAQRMSQIGVRFGLA
TEDDILEGLKYKSGRVMAYPAKRFLEDGDRPKQRYPGSGALDPESLQIWV
VKVVTPLVGLFTWENGGLYQEIGLPELTAYTKVDLEEDGEHFDAVAATLR
KVASAKLPEKRLSYVVANKEDMSSLASRFQFPEPEGEEAPEAVTVGIRTE
NKFYRMDGKFDEKTVAEFVDAYLNGSLKPTHVEAVDEGMGSAGAGDEIDD
EDSDVVVVS
back to top