mRNA_Ecto-sp13_S_contig12752.2282.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12752.2282.1
Unique NamemRNA_Ecto-sp13_S_contig12752.2282.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12752.2282.1 vs. uniprot
Match: A0A6H5JHA1_9PHAE (RB_A domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 9.750e-36
Identity = 75/85 (88.24%), Postives = 76/85 (89.41%), Query Frame = 2 
Query:  197 SPRQPMDISNTLDAAAALGLADDEAVKSRILGYVDFIEGMQLSSAAEVEDAKTAERLCSASAIFLALYDDDQPAAEAEDARPPRT 451
            SP Q MDISN LDAAAALGLADDEAVKSRILGYVD IEGMQLSS AEVEDAKTAERLCSASAIFLALYDDD+P AE EDA PP T
Sbjct:    8 SPLQAMDISNALDAAAALGLADDEAVKSRILGYVDLIEGMQLSSPAEVEDAKTAERLCSASAIFLALYDDDEPTAETEDALPPTT 92
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BLAST of mRNA_Ecto-sp13_S_contig12752.2282.1 vs. uniprot
Match: D7G8E5_ECTSI (Putative retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 9.620e-13
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2 
Query:  320 LSSAAEVEDAKTAERLCSASAIFLALYDDDQPAAEAEDARPPRT 451
            LSSAAEVEDAKTAERLCSASAIFLALYDDD+PAAEAEDA+P  T
Sbjct:    2 LSSAAEVEDAKTAERLCSASAIFLALYDDDEPAAEAEDAQPRAT 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12752.2282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHA1_9PHAE9.750e-3688.24RB_A domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7G8E5_ECTSI9.620e-1390.91Putative retinoblastoma n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12752contigEcto-sp13_S_contig12752:2..2590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size454
Hectar predicted targeting categoryother localisation
Exons2
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462682.2765589-UTR-Ecto-sp13_S_contig12752:1..311681462682.2765589-UTR-Ecto-sp13_S_contig12752:1..31Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12752 2..31 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462682.284896-CDS-Ecto-sp13_S_contig12752:31..1351681462682.284896-CDS-Ecto-sp13_S_contig12752:31..135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12752 32..135 -
1681462682.2926722-CDS-Ecto-sp13_S_contig12752:2271..25901681462682.2926722-CDS-Ecto-sp13_S_contig12752:2271..2590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12752 2272..2590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12752.2282.1prot_Ecto-sp13_S_contig12752.2282.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12752 32..2590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12752.2282.1

>prot_Ecto-sp13_S_contig12752.2282.1 ID=prot_Ecto-sp13_S_contig12752.2282.1|Name=mRNA_Ecto-sp13_S_contig12752.2282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
HRLLPSLPEDKSGERLILLLARTSSFRLQRRARGNSRRTQERIPAAAAAG
RSPPKHGGGGGGGVVLSPATDGHFQHVGRGGGIGARRRRGGEVEDTGLRG
FHRRDAVVVRCRGRRRQDRGAPVLSLGDFSRPVRRRPARG*
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mRNA from alignment at Ecto-sp13_S_contig12752:2..2590-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12752.2282.1 ID=mRNA_Ecto-sp13_S_contig12752.2282.1|Name=mRNA_Ecto-sp13_S_contig12752.2282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2589bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12752:2..2590- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCGCCTGCTTCCTTCCCTGCCGGAAGACAAGAGCGGAGAGCGCTTGAT
CCTCCTGCTGGCTCGAACTTCGAGCTTCAGGCTGCAGCGAAGAGCGAGAG
GAAATAGTCGACGCACTCAAGAGAGAATACCAGCTGCTGCTGCTGCGGGT
CGATCTCCTCCAAAGCATGGCGGCGGCGGCGGCGGCGGCGTCGTCCTCTC
CCCGGCAACCGATGGACATTTCCAACACGTTGGACGCGGCGGCGGCATTG
GGGCTCGCCGACGACGAGGCGGTGAAGTCGAGGATACTGGGCTACGTGGA
TTTCATCGAAGGGATGCAGGTGCGGCAGTCGAAGCGCTGCTGTTGTTGTT
GTAGCGCCGAATGAGTCGTCGTGGTACGCGTACATTTGTATCAGTTTGCG
AGTGTAATGTGGATACAGAGCTGTGGTAGTGAGTAGCTGCTCCATCCCAC
CATGTACCCACAGACGGGTGTATACACGGCAGAGCCCAACCGCTGCTGTT
GAAAACAGCGTCCGGCCGGCTGGCGTTGCTTCTCGATGGAACGCAGCCTC
TCCGTCGCTGCTGCAGGCATGCAGGTAAAAAGAAAGAAGCCGGCGTGTGT
GGTGTTTGTGTCTGGCGGGGCGGCGGATCATACAACATGTTCGCACGACC
TAATGAGACAGAACACTCAGGATACACGGTACACTGCCGTGTTCTCCCGC
CGCCGGTGCCTTGCAAGGCTGTCACGCCATAGGCGCGCCAAAGAACAACG
GCGTTGCGCTTGTGGCTGCAGCCGTTCCGATCCGTGAGTGGGTGCAGAGC
TGTCTCCAACACACACTAATTACTGAAGACGGCCAAGAGTTGTTCCGAAT
CTTGCATACATATAGAGGAGTAAAAGGACATTTTGGCGCGCGTTTCCGAA
AGCCGTTCCCCTAAAGCCGTTGTCCCGTAAAGCTGTTCCACGAGTGTGAC
TAACGTACAGAACCTGTCTATTTGTAGAGTAGCGGAACACGCCCTTTACA
CGACGGTTGGCATGCACATGGGGGTGCACATGCAGTCTTCGGCCGTCCCA
CGGCGACACATGTCACTGCTCTCCAGCTGCGCTCGGTGATGTCTGCTGAA
TGAATCATCGCGACAAAATGTTCGGCTGTTGGAAATCAATGTCCCCATCC
GAGCGTGGAAATGGAGGGACCGCCTTCGCGAGAAATTTCGTTGATGAGGA
ACTACTGTAGAACAGGGGAAAGGCTAGCTACCGCGTTCGCGAGAAATAAG
CCAGCTTGCCAGATTGCATGCTTTATCCAACATGTTTACTTACTAGAAAA
ACGTGCCGAAGGCTGCTGGGAAATTGAGTTGTCAAGGGTCTTCCATTACG
TTGCACAGCAAGAACTTGATAGAAGAACGTAGCAAAGGCTTCTGGGAAAT
TGTGACGTATCAAGGGTCTTTCATCATGTTGCACTGCAGAGTCAAGTTTT
TTTTTTCTTTCAGAAACCACACAGACCCTCTTTGTCTATGTACGTACCTA
TTGATGATTCACGGGACTTTTAAGTTGTCTCAACGTCTCTTAGTCGTTTT
GGCGTCCATACGCGTACGTATAGCACGCACTGCTTTCGCCATAGGCCGCG
CACGTGCGTAGAGCATGTGCTGTGCGTGGCGCAGCGGTTGCCGTACATAA
CAAATACTTGTTTGTGTGCTGCGCTGGCCTTCCGCGCGCGCTTTGGTGAC
GGGAGTCCTGTTTGTTATGTGTGCGGCCGACCAACATGAACCACTCGGCC
GTATGTATGCCCCCCTCTGCATGCGGTTCAAAAATCCTCTGCCCGGTAAG
ATCTAGTGACCGACTTGCAAGCACTAAAGTGGGCACGTGGATACGCAGCC
CGAGTATACCTCCCCCTGCTTCATTCTTTTTGTTTTTCTGCGTGTTTTGG
GGCGGTCATCGCTGTTTGGTTGGTCCGCTTCACTGTACTCAAAATGAGTG
CAGAGGGCCGCCGGCTGTTTGGAACTATTTGACAAGAAACACTCTTGAGG
TCGTTTTTTGGTCTAATATTGTTGCCCTGCTCTTTTGTCTTCGCCGTGTG
CTAGGCATCAGCCACCATATTGAACCCATCAAGAGCCTTACGCAAGCCCC
CCCTCCCCAGCGAGAGCTTGTCAGATTTTGTGTAGGTAGACATATACTCC
TCCAGCTGGCCCTTTTCGGAGAACGCACGCGTGTTTCTTCCCGCAGCGTT
AGAGCACATCTTGTTGCCCACCATTCATGTCCCCAAGTCACGGGAGGGAG
GGAGAGGGGGAGGGAGGCAGGGCTCATCCTCCAAGAACACGACCAAGCAT
GGCACGTATTCATAATGCGTGTTCGCGTATGACCGTTGGGGGCGCCGGTT
CGTGTCTGACTGACTATATACCTCGTCTGTGTCTTTCTTATCTGCCTGTC
TGTCTAACCTGGCTGTACACACGGATGGCTGACCTTGACTAAAAACGGAG
GACAGTTGTCGTCCGCTGCCGAGGTCGAAGACGCCAAGACCGCGGAGCGC
CTGTGCTCAGCCTCGGCGATTTTTCTCGCCCTGTACGACGACGACCAGCC
CGCGGCTGAGGCCGAGGACGCGCGACCACCGAGGACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12752:2..2590-

>mRNA_Ecto-sp13_S_contig12752.2282.1 ID=mRNA_Ecto-sp13_S_contig12752.2282.1|Name=mRNA_Ecto-sp13_S_contig12752.2282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12752:2..2590- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCGCCTGCTTCCTTCCCTGCCGGAAGACAAGAGCGGAGAGCGCTTGAT
CCTCCTGCTGGCTCGAACTTCGAGCTTCAGGCTGCAGCGAAGAGCGAGAG
GAAATAGTCGACGCACTCAAGAGAGAATACCAGCTGCTGCTGCTGCGGGT
CGATCTCCTCCAAAGCATGGCGGCGGCGGCGGCGGCGGCGTCGTCCTCTC
CCCGGCAACCGATGGACATTTCCAACACGTTGGACGCGGCGGCGGCATTG
GGGCTCGCCGACGACGAGGCGGTGAAGTCGAGGATACTGGGCTACGTGGA
TTTCATCGAAGGGATGCAGTTGTCGTCCGCTGCCGAGGTCGAAGACGCCA
AGACCGCGGAGCGCCTGTGCTCAGCCTCGGCGATTTTTCTCGCCCTGTAC
GACGACGACCAGCCCGCGGCTGA
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