mRNA_Ecto-sp13_S_contig12749.2278.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12749.2278.1
Unique NamemRNA_Ecto-sp13_S_contig12749.2278.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: D7G5V4_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V4_ECTSI)

HSP 1 Score: 418 bits (1075), Expect = 3.740e-146
Identity = 205/217 (94.47%), Postives = 209/217 (96.31%), Query Frame = 1
Query:    1 VSIEPRPDWQDILDAAASSLIPDGVGSNACGVVSGMEPIFKALPLWASVVHVAPHRVSVHQRSADGATDGVAFQHSLVKGDGGLVSTAKEEVYHNSVQDAFVIFNTHPSGFTRFVEHSRALTSGHNRSSEARGMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 651
            VSIEPRPDWQDILDAAASSLIPDGVGSNACG V GMEP+F ALPLWASVVHVAPHRVSVHQRS+DG TDGVAFQHSLV GDGGLVSTAKEE+YHNSVQDAFVIFNTHPSG TRFVEHS+ALTSGH RSSEAR MVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK
Sbjct:   83 VSIEPRPDWQDILDAAASSLIPDGVGSNACGAVGGMEPLFNALPLWASVVHVAPHRVSVHQRSSDGVTDGVAFQHSLVNGDGGLVSTAKEEMYHNSVQDAFVIFNTHPSGSTRFVEHSQALTSGHTRSSEARRMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 299          
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: A0A6H5JSJ1_9PHAE (HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ1_9PHAE)

HSP 1 Score: 416 bits (1068), Expect = 1.560e-142
Identity = 204/217 (94.01%), Postives = 209/217 (96.31%), Query Frame = 1
Query:    1 VSIEPRPDWQDILDAAASSLIPDGVGSNACGVVSGMEPIFKALPLWASVVHVAPHRVSVHQRSADGATDGVAFQHSLVKGDGGLVSTAKEEVYHNSVQDAFVIFNTHPSGFTRFVEHSRALTSGHNRSSEARGMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 651
            VSIEPRPDWQDILDAAASSLIPDGVGSNACG VSGMEP+FKA+PLWASVVHVAPHRVSVHQRSADGATDGVAFQHSLV GDGGLVSTAKEE+YH+SVQDAFVIFNTHPSG TRFVEHSRALTSGH  SSE R  VPKKTSPP+RKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK
Sbjct:  146 VSIEPRPDWQDILDAAASSLIPDGVGSNACGAVSGMEPLFKAVPLWASVVHVAPHRVSVHQRSADGATDGVAFQHSLVSGDGGLVSTAKEEMYHSSVQDAFVIFNTHPSGSTRFVEHSRALTSGHTHSSEPRRTVPKKTSPPKRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 362          
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 177 bits (450), Expect = 2.830e-50
Identity = 102/223 (45.74%), Postives = 138/223 (61.88%), Query Frame = 1
Query:    1 VSIEPRPDWQDILDAAASSLIPDGVGSNACGVVSGMEPIFK--ALPLWASVVHVAPHRVSVHQRSADGATDGVAFQHSLVKGDGGLVSTAKEEVYHNSVQDAFVIFNTHPSGFTRFVEHSRALTSGHNRSSEARGMVP-KKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVR---DAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 651
            VSI  R DW+D L A  +SLI     S A G   G+    +  + P W+SVVH+AP RV+VHQR AD AT+G++  +     +   +  +      ++VQDAFVIF TH     RF +H+ AL  G +R S+ +  V  +  + P+R +KDPNRPRGY+SAFNFFVKDKR  YV+   +AQG S  +NNE+NKMLG+ WK  T +EK  Y+ ++  DK RYLK
Sbjct:   83 VSINSRSDWRDALSATVTSLIMGSTESIAGGAPCGLNSRSEWFSSPAWSSVVHMAPSRVAVHQRCADEATEGLSVHYFRTMVEDRHLGLSSIHDRQDNVQDAFVIFGTHSRHPVRFRQHTGALGHGRSRYSKPQTRVAYESATAPKRHKKDPNRPRGYISAFNFFVKDKRPTYVQSRPNAQGHSLEHNNEINKMLGKVWKTATEQEKKTYEEKATADKVRYLK 305          
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: A0A7J6V6Z4_THATH (High mobility group b protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V6Z4_THATH)

HSP 1 Score: 61.6 bits (148), Expect = 1.120e-7
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  412 KTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 651
            +T   R++ +DP RP+ Y SA+NFF  DKRS    + + + P    +  KM+G+AW  LT EEK  YQ     DK RY K
Sbjct:  216 RTKKKRQRLEDPARPKRYRSAYNFFFSDKRS----ELKTLCPHRERDFTKMIGEAWNNLTGEEKKVYQEIGTRDKERYQK 291          
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: A0A7S0WQ82_9CHLO (FACT complex subunit SSRP1 n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WQ82_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 3.210e-7
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:  430 RKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLKV 654
            RK+KDPN P+G +SAF +F    R     +  G+  G   EV K++G+ WK  T E+K  Y+A +  DK RY K 
Sbjct:  597 RKKKDPNAPKGAISAFMYFSNALRDKVKEENPGIKFG---EVGKLMGERWKAATAEDKAPYEAMAREDKARYAKA 668          
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: A0A0J9TH31_PLAVI (High mobility group protein n=6 Tax=Plasmodium vivax TaxID=5855 RepID=A0A0J9TH31_PLAVI)

HSP 1 Score: 58.2 bits (139), Expect = 4.640e-7
Identity = 36/120 (30.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  301 FVIFNTH---PSGFTRFVEHSRALTSGHNRSSEARGMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 651
            F I N H   P+G  +  E +   T   +    A+          +RK+KDP  P+  +SA+ F+VKDKR   +++   ++  +  +V K++G+AW +L+  +K  Y+ ++ +DK RY K
Sbjct:   42 FHILNPHLELPNGKKQTQELATVTTKQMSNKMAAKSQKKVLKKQNKRKKKDPLAPKRALSAYMFYVKDKRLELIKERPELAK-DVAQVGKLVGEAWGQLSAAQKTPYEKKAQLDKVRYSK 160          
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: W7APU7_PLAVN (High mobility group protein B2, putative n=8 Tax=Plasmodium TaxID=5820 RepID=W7APU7_PLAVN)

HSP 1 Score: 56.2 bits (134), Expect = 5.430e-7
Identity = 27/75 (36.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  427 RRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 651
            ++K+KDP  P+  +SA+ F+VKDKR   +++   ++     +V K++G+AW +LT  +K  Y+ ++++DK RY K
Sbjct:   15 KKKKKDPLAPKRALSAYMFYVKDKRLEIIQERPELAK-EVAQVGKLIGEAWGQLTPAQKAPYEKKAELDKVRYSK 88          
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: A0A1J1GM50_PLAGA (HMG box domain-containing protein n=27 Tax=Plasmodiidae TaxID=1639119 RepID=A0A1J1GM50_PLAGA)

HSP 1 Score: 56.2 bits (134), Expect = 5.560e-7
Identity = 26/75 (34.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  427 RRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 651
            ++K+KDP  P+  +SA+ F+VKDKR   +++   ++  +  +V K++G+AW +L+  +K+ Y+ ++ +DK RY K
Sbjct:   15 KKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAK-DVAQVGKLIGEAWGKLSAAQKSPYEKKAQLDKARYSK 88          
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: A0A2G5ELZ5_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5ELZ5_AQUCA)

HSP 1 Score: 58.9 bits (141), Expect = 9.770e-7
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  427 RRKRK-----DPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 651
            RRKRK     DP+RP+ + SA+NFF  DK S    + + + P    +  KM+G+AW  LT EEK  YQ     DK RY K
Sbjct:  222 RRKRKRQRLEDPDRPKKHRSAYNFFFSDKHS----ELKSLCPHRERDFTKMIGEAWSNLTGEEKKVYQEIGIRDKERYQK 297          
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Match: Q7R8Z3_PLAYO (High mobility group protein n=5 Tax=Plasmodium (Vinckeia) TaxID=418101 RepID=Q7R8Z3_PLAYO)

HSP 1 Score: 56.2 bits (134), Expect = 1.010e-6
Identity = 27/75 (36.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  427 RRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 651
            ++K+KDP  P+  +SA+ F+VKDKR   +++   ++     +V K++G+AW +LT  +K  Y+ ++++DK RY K
Sbjct:   43 KKKKKDPLAPKRALSAYMFYVKDKRLEIIQERPELAK-EVAQVGKLIGEAWGQLTPAQKAPYEKKAELDKVRYSK 116          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12749.2278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G5V4_ECTSI3.740e-14694.47HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JSJ1_9PHAE1.560e-14294.01HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A2Z4MTA2_SACJA2.830e-5045.74HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
A0A7J6V6Z4_THATH1.120e-742.50High mobility group b protein n=1 Tax=Thalictrum t... [more]
A0A7S0WQ82_9CHLO3.210e-741.33FACT complex subunit SSRP1 n=1 Tax=Chlamydomonas l... [more]
A0A0J9TH31_PLAVI4.640e-730.00High mobility group protein n=6 Tax=Plasmodium viv... [more]
W7APU7_PLAVN5.430e-736.00High mobility group protein B2, putative n=8 Tax=P... [more]
A0A1J1GM50_PLAGA5.560e-734.67HMG box domain-containing protein n=27 Tax=Plasmod... [more]
A0A2G5ELZ5_AQUCA9.770e-743.75Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]
Q7R8Z3_PLAYO1.010e-636.00High mobility group protein n=5 Tax=Plasmodium (Vi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12749contigEcto-sp13_S_contig12749:2475..3407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeApicomplexa
Stop1
Start0
Seed ortholog score62.8
Seed ortholog evalue2.3e-07
Seed eggNOG ortholog29176.XP_003882667.1
Model size660
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.high mobility group
EggNOG OGs3YHHJ@5794,3YPF4@5796,3YVKS@5809,COG5648@1,KOG0381@2759
Ec32 ortholog descriptionHigh mobility group domain protein
Ec32 orthologEc-13_001750.1
Cds size660
COG Functional cat.B
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462682.064836-CDS-Ecto-sp13_S_contig12749:2474..26421681462682.064836-CDS-Ecto-sp13_S_contig12749:2474..2642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12749 2475..2642 +
1681462682.0742416-CDS-Ecto-sp13_S_contig12749:2793..31501681462682.0742416-CDS-Ecto-sp13_S_contig12749:2793..3150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12749 2794..3150 +
1681462682.0827842-CDS-Ecto-sp13_S_contig12749:3272..34071681462682.0827842-CDS-Ecto-sp13_S_contig12749:3272..3407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12749 3273..3407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12749.2278.1prot_Ecto-sp13_S_contig12749.2278.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12749 2475..3407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12749.2278.1

>prot_Ecto-sp13_S_contig12749.2278.1 ID=prot_Ecto-sp13_S_contig12749.2278.1|Name=mRNA_Ecto-sp13_S_contig12749.2278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
VSIEPRPDWQDILDAAASSLIPDGVGSNACGVVSGMEPIFKALPLWASVV
HVAPHRVSVHQRSADGATDGVAFQHSLVKGDGGLVSTAKEEVYHNSVQDA
FVIFNTHPSGFTRFVEHSRALTSGHNRSSEARGMVPKKTSPPRRKRKDPN
RPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEE
KNCYQARSDVDKCRYLKVS*
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mRNA from alignment at Ecto-sp13_S_contig12749:2475..3407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12749.2278.1 ID=mRNA_Ecto-sp13_S_contig12749.2278.1|Name=mRNA_Ecto-sp13_S_contig12749.2278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12749:2475..3407+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCCATCGAGCCAAGACCTGACTGGCAAGACATCCTTGATGCAGCTGC ATCATCTCTCATTCCGGATGGCGTGGGTAGTAACGCGTGCGGAGTCGTCA GCGGAATGGAACCGATATTCAAGGCGCTACCCTTGTGGGCATCTGTGGTG CATGTGGCACCACATCGGGTGCGTGCGTGCCATTCTTTAGCTTGAGAGTG TTCTAGCTTGAGCGTGTTTCGGCTCCTTCCAGTCATTCTGATGGATGCAC CACTGTTATCGCACTGCAGGCGTACGTGCGATGAGCAAACCACCGCCATA TTCGCGACGCGCCTTCTAGGTTTCAGTTCACCAACGCAGCGCTGACGGCG CCACGGATGGCGTGGCTTTCCAACACTCCCTCGTAAAAGGAGATGGTGGG CTAGTCTCAACGGCGAAGGAAGAAGTGTACCACAACAGCGTTCAAGATGC ATTCGTCATTTTCAACACCCATCCTTCCGGTTTTACGAGGTTTGTCGAAC ATTCTCGAGCGTTGACGAGTGGACACAACCGTTCTTCTGAAGCACGCGGC ATGGTGCCCAAGAAGACCTCGCCACCCAGGCGCAAGAGGAAGGACCCGAA TCGTCCGCGTGGCTATGTCAGTGCCTTTAACTTCTTCGTCAAGGACAAGC GATCAGCCTACGTTCGAGATGCGCAGGTGACACGCCTCTCCCTGTTGGTT TGAGCATGTCTACCATGTTCCCCCAGAGTCTTTTTCACCGTCTCAAACTG CCGTCATCCGCCGAATGAACACCTTTGTCCACGTCAACAACACGTCAGGG GGTTTCTCCCGGAAACAACAACGAAGTGAACAAAATGCTTGGTCAGGCTT GGAAAGAATTGACCACCGAGGAGAAGAACTGCTATCAGGCGAGGTCAGAC GTGGACAAGTGTCGCTACCTGAAGGTGAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12749:2475..3407+

>mRNA_Ecto-sp13_S_contig12749.2278.1 ID=mRNA_Ecto-sp13_S_contig12749.2278.1|Name=mRNA_Ecto-sp13_S_contig12749.2278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12749:2475..3407+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCCATCGAGCCAAGACCTGACTGGCAAGACATCCTTGATGCAGCTGC
ATCATCTCTCATTCCGGATGGCGTGGGTAGTAACGCGTGCGGAGTCGTCA
GCGGAATGGAACCGATATTCAAGGCGCTACCCTTGTGGGCATCTGTGGTG
CATGTGGCACCACATCGGGTTTCAGTTCACCAACGCAGCGCTGACGGCGC
CACGGATGGCGTGGCTTTCCAACACTCCCTCGTAAAAGGAGATGGTGGGC
TAGTCTCAACGGCGAAGGAAGAAGTGTACCACAACAGCGTTCAAGATGCA
TTCGTCATTTTCAACACCCATCCTTCCGGTTTTACGAGGTTTGTCGAACA
TTCTCGAGCGTTGACGAGTGGACACAACCGTTCTTCTGAAGCACGCGGCA
TGGTGCCCAAGAAGACCTCGCCACCCAGGCGCAAGAGGAAGGACCCGAAT
CGTCCGCGTGGCTATGTCAGTGCCTTTAACTTCTTCGTCAAGGACAAGCG
ATCAGCCTACGTTCGAGATGCGCAGGGGGTTTCTCCCGGAAACAACAACG
AAGTGAACAAAATGCTTGGTCAGGCTTGGAAAGAATTGACCACCGAGGAG
AAGAACTGCTATCAGGCGAGGTCAGACGTGGACAAGTGTCGCTACCTGAA
GGTGAGTTAA
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