mRNA_Ecto-sp13_S_contig12741.2273.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12741.2273.1 vs. uniprot
Match: A0A6H5JSL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL3_9PHAE) HSP 1 Score: 769 bits (1985), Expect = 1.480e-261 Identity = 576/814 (70.76%), Postives = 589/814 (72.36%), Query Frame = 1
Query: 151 TTADFASGEGTRSLGGAGENTDAALLATSACDGKGSGGGAVPCGALSVAVEGAIPFAGLVAGSEDVAVAVAQDRDGSPPAAALXXXXXXXXXXXXXXXXXXXXXXXXXXDAWTADEHDSGALRAEGSGPLDPPEGKEDGAVVHEGGGRMAREARDEPGAADSTSPSSPTASAALADGNEDGGAETPNPTTAVLPEEARVVGVAASSGAGVETQPRVAVLPAMETAREMAGEAGVRQEEETVERPGTPRSVTHVPPPPFGMGPEHDPSAMEEIRSGAAADGVPTEGETAGAVPLTTTPVVEAGLDGNAEEDAALAAVGKPVSEGINPAVERVDGAATKTLAATPTPTXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXXPSEPFGVAATDDSAALRAAEPDCLEGSSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAFPEQGVNVLARDVELSPVVEGAASQTPXXXXXXXXXXXXXXXXXGRERATAXXXXXXXARAAALVASXXXXXXXXXXXXXXXXXXXALGAVAGPKAKWGVETTAAESAAPRLDAARADDDLVMTKATQAGADKVGVRTVFGGDVVSTVGPAPGSVEPPAMPDSVVTAAAATPVEAVDEPSGIEAGVVSPIAETAAAAATAAASERSSHDVAAQALGEGGEGEAPATCAAVDGADADPPVAASLPPVFSDGSGGSEXXXXXXXXXXXXAVEPTGATILSGSVTAEVFASRSGTGAIPWPDSSEDDESNGXXXXXXXXKNGRRSSSRNHMSVEEAAAFMNPGGAGAARMGSGRFASGSSWGGASAIG 2592
TTAD ASGE TRSLG AGENTDAALL SACD K SGGGAVPCGA SVAVE IPF GLVAGSEDVAVAV QDRDGSPPAAAL DAW ADEHDS ALRAE SGPLDPPEG+EDGAV H GGGRMA ARD PG DST PSSPTASAALADGNEDGG E PNPTTAVLPEEARVVGVAASSG GVET PRVAVLPAMET+REMAGEA RQ++ETVERP T RS T PPPPF GPEHDPSAMEE+RSGAAADGVPTEGETA AVPLTTT VVEAGL GNAEE+AALAAVGKPVS GI PAVER+D AAT+TLAATPTP XXXXXXXXXXXX XXXXXXXXXXX PSEPFGVAA DD XXXXXXXX TAA PEQGV VLARDV L+ V E AAS TP XXXXXXXXXXXXXXXX XXXXXXX RAAAL+AS XXXXXXXXXXXXXXXXXX +A ADDDLVMTKA QAGADKVG+RTVFGGD VSTVGPAPGSVEPPAMPDSVV AAAATPVE VDEPS I+AGVVSPIA A SSHDVAAQALGEGGEG A AT AAVDGADADPPVAA LPPVFSDGSGGSE AVEPTGATILSGSVTAEVFASRSGTGAIPWPDSSEDDESN KNGRRSSSRNHMSVEEAAAFMNPGGAG RM SSWGGASAIG
Sbjct: 51 TTADLASGEVTRSLGDAGENTDAALLVASACDSKVSGGGAVPCGASSVAVESVIPFPGLVAGSEDVAVAVVQDRDGSPPAAALAGDSEAATATADVSQQDLDSSMVDEMDAWIADEHDSSALRAERSGPLDPPEGEEDGAVAHGGGGRMAPGARDGPGVVDSTPPSSPTASAALADGNEDGGGEAPNPTTAVLPEEARVVGVAASSGEGVETPPRVAVLPAMETSREMAGEARERQQKETVERPETARSATQAPPPPFDTGPEHDPSAMEEVRSGAAADGVPTEGETARAVPLTTTLVVEAGLGGNAEENAALAAVGKPVSGGITPAVERIDKAATETLAATPTPAXXXXXXXXXXXXXXXXXXXXXXXXASPMPPES-----PSEPFGVAAKDDXXXXXXXX---XXXXXXXXXXXXXXASLSNEEATFTLPASPTTSADINDNNTAACPEQGVEVLARDVALAAVAEEAASLTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAALLASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGSADDDLVMTKANQAGADKVGMRTVFGGDAVSTVGPAPGSVEPPAMPDSVV-AAAATPVEVVDEPSEIQAGVVSPIAGAAXXXXXXXXXXXSSHDVAAQALGEGGEGGASATRAAVDGADADPPVAAPLPPVFSDGSGGSESDAAAAVA----AVEPTGATILSGSVTAEVFASRSGTGAIPWPDSSEDDESNHGDEYDGGDKNGRRSSSRNHMSVEEAAAFMNPGGAGTGRMXXXXXXXXSSWGGASAIG 851
BLAST of mRNA_Ecto-sp13_S_contig12741.2273.1 vs. uniprot
Match: D7FXY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY0_ECTSI) HSP 1 Score: 495 bits (1274), Expect = 3.180e-157 Identity = 458/869 (52.70%), Postives = 477/869 (54.89%), Query Frame = 1
Query: 1 MAKRSKKKGRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTADFASGEGTRSLGGAGENTDAALLATSACDGKGSGGGAVPCGALSVAVEGAIPFAGLVAGSEDVAVAVAQDRDGSPPAAALXXXXXXXXXXXXXXXXXXXXXXXXXXDAWTADEHDSGALRAEGSGPLDPPEGKE-DGAVVHEGGGRMAREARDEPGAADSTSPSSPTASAALADGNEDGGAETPNPTTAVLPEEARVVGVAASSGAGVETQPRVAVLPAMETAREMAGEAGVRQEEETVERPGTPRSVTHVPPPPFGMGPEHDPSAMEEIRSGAAADGVPTEGETAGAVPLTTTPVVEAGLDGNAEEDAALAAVGKPVSEGINPAVERVDGAATKTLAATPTPTXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXXPSEPFGVAATDDSAALRAAEPDCLEGSSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAFPEQGVNVLARDVELSPVVEGAASQTPXXXXXXXXXXXXXXXXX-GRERATAXXXXXXXARAAALVASXXXXXXXXXXXXXXXXXXXALGAVAGPKAKWGVETTAAESAAPRLDAARADDDLVMTKATQAGADKVGVRTVFGGDVVSTVGPAPGSVEPPAMPDSVVTAAAATPVEAVDEPSGIEAGVVSPIAETAAAAATAAASERSSHDVAAQALGEGGEGEAPATCAAVDGAD---ADPPVAASLPPVFSDGSGGSEXXXXXXXXXXXXAVEPTGATILSGSVTAEVFASRSGTGAIPWPDSSEDDESNGXXXXXXXXKNGRRSSSRNHMSVEEAAAFMNPGGAGAARMGSGRFASGSSWGGASAIG 2592
MAKRSKKKGRSK XXXXXXXXXX XXXXXXX TTADFASGEG RSLGGAGENTDA L CD +GS GAVPCGA V VE AI GL AGSE AVA+AQDRDGSPPAAAL DAW AD+HDS +RAEGSGPL PPEG+E DGAVV+EGGGRMA EARD PGAADST PSSPTASAALAD NEDG ETPNPT AVLPEEA+VVGVAASSGAGVET PRV LPAMETAREMAGEA VRQEEE+VERPGT SVT PPP F GPEHDPSA+EE AT TL A+PT SA + TAA PEQGV V+ RD L+ V EGAASQTP XXXXXXXXXXXXXX GRE+ATA XXX ARAAAL+AS XXXXXXXXXXXXXXXXX +DLVMTKA Q GADKVGV+ VFGGD VSTVGPAPGSVEPPAMPDSV+ AAAATPV+ VDEPSGIEAGVVSPIAE A ADPPVAA LPPVFSDGSGGSE A EPTGATILSGSVTAEVFASRSGTGAIPWPDSSEDDE XXXXXXXX HMSVEEAAAFMNPGGAG SSWGGASAIG
Sbjct: 1 MAKRSKKKGRSKRGRGGEKGXXXXXXXXXXGDPTLPAAGSTEXXXXXXXXTTADFASGEGMRSLGGAGENTDADQLVAPDCDSEGSDSGAVPCGAPPVVVESAISLPGLAAGSE--AVAMAQDRDGSPPAAALAGGSEAATAAAGVSQQDLDSPMVDEMDAWIADDHDSSVVRAEGSGPLGPPEGEEEDGAVVYEGGGRMASEARDGPGAADSTPPSSPTASAALADDNEDGMGETPNPTKAVLPEEAKVVGVAASSGAGVETPPRVEALPAMETAREMAGEARVRQEEESVERPGTACSVTDAPPP-FDTGPEHDPSAIEE---------------------------------------------------------------ATLTLPASPTT--------------------------------------------------SADIN--------------------------------------------NNTAACPEQGVEVVVRDSALAAVAEGAASQTPLLXXXXXXXXXXXXXXDTGREKATAAKXXXASARAAALLASAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLVMTKAAQVGADKVGVQAVFGGDAVSTVGPAPGSVEPPAMPDSVL-AAAATPVKVVDEPSGIEAGVVSPIAEAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPPVAAPLPPVFSDGSGGSESDVAAA------AAEPTGATILSGSVTAEVFASRSGTGAIPWPDSSEDDEXXXXXXXXXXXXXXXXXXXXXHMSVEEAAAFMNPGGAGTXXXXXXXXXXXSSWGGASAIG 702 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12741.2273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12741.2273.1 >prot_Ecto-sp13_S_contig12741.2273.1 ID=prot_Ecto-sp13_S_contig12741.2273.1|Name=mRNA_Ecto-sp13_S_contig12741.2273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=864bp MAKRSKKKGRSKRGGGGEKNAASGAGGSGGGDPTLPAAGSTGGGGNTGGAback to top mRNA from alignment at Ecto-sp13_S_contig12741:1515..4949+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12741.2273.1 ID=mRNA_Ecto-sp13_S_contig12741.2273.1|Name=mRNA_Ecto-sp13_S_contig12741.2273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12741:1515..4949+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12741:1515..4949+ >mRNA_Ecto-sp13_S_contig12741.2273.1 ID=mRNA_Ecto-sp13_S_contig12741.2273.1|Name=mRNA_Ecto-sp13_S_contig12741.2273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2592bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12741:1515..4949+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |