prot_Ecto-sp13_S_contig1274.2270.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1274.2270.1
Unique Nameprot_Ecto-sp13_S_contig1274.2270.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length143
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1274.2270.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 3.550e-56
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 
Query:    1 MCRTIRKETGWQERTLRQACDWATGELEQNQYPGVGMARYYRVVEL---SKSEDVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTV 103
            MCRTIRKETGWQERTLRQACDWATGELEQNQ+PGVGMARYYRVVEL   SKSEDVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTV
Sbjct:   45 MCRTIRKETGWQERTLRQACDWATGELEQNQHPGVGMARYYRVVELAMGSKSEDVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTV 150
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BLAST of mRNA_Ecto-sp13_S_contig1274.2270.1 vs. uniprot
Match: A0A6H5KGZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.040e-9
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 
Query:    1 MCRTIRKETGWQERTLRQACDWATG 25
            MCRTIRKETGWQERTLRQACDWATG
Sbjct:   45 MCRTIRKETGWQERTLRQACDWATG 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1274.2270.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFA1_ECTSI3.550e-5696.23BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
A0A6H5KGZ2_9PHAE6.040e-9100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1274contigEcto-sp13_S_contig1274:10741..13732 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1274.2270.1mRNA_Ecto-sp13_S_contig1274.2270.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1274 10617..14406 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1274.2270.1 ID=prot_Ecto-sp13_S_contig1274.2270.1|Name=mRNA_Ecto-sp13_S_contig1274.2270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MCRTIRKETGWQERTLRQACDWATGELEQNQYPGVGMARYYRVVELSKSE
DVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRD
KTVRRGGRAQAVRCLLSCVTCARDVLGDRLHRQQGEVQQGAG*
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