mRNA_Ecto-sp13_S_contig1274.2270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1274.2270.1
Unique NamemRNA_Ecto-sp13_S_contig1274.2270.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1274.2270.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 5.050e-80
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 AAEAGVHPPPTASDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWATGELEQNQYPGVGMARYYRVVEL---SKSEDVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTV 433
            AAEAGVHPPPT SDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWATGELEQNQ+PGVGMARYYRVVEL   SKSEDVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTV
Sbjct:    4 AAEAGVHPPPTESDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWATGELEQNQHPGVGMARYYRVVELAMGSKSEDVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTV 150
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BLAST of mRNA_Ecto-sp13_S_contig1274.2270.1 vs. uniprot
Match: A0A6H5KGZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ2_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.410e-36
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2 
Query:    2 AAEAGVHPPPTASDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWATG 199
            AAEAGVHPPPT SDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWATG
Sbjct:    4 AAEAGVHPPPTESDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWATG 69
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BLAST of mRNA_Ecto-sp13_S_contig1274.2270.1 vs. uniprot
Match: A0A6H5KHB1_9PHAE (Sec7_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB1_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.900e-32
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 3 
Query:  579 MTFSRLEMESPPPSLHGGPGQQATPSPKKRHNSAIEALLSPARRSELSPAAAVXXXXXXXXXXXXXXXXXXXXXXVGGDGSGDPRNRLGGVLPGVLEVLAGEEEGQED 902
            MTFSRLEMESPPPS+HGG GQ A+PSPKKR  SAIEALLSPARRSELSPA   XXXXXXXXXXXXXXXXXXXXX VGGDGS DPRNRLGGVLPGVLEVLAGE+EGQE+
Sbjct:    1 MTFSRLEMESPPPSIHGGQGQHASPSPKKRRTSAIEALLSPARRSELSPAXXXXXXXXXXXXXXXXXXXXXXXX-VGGDGSDDPRNRLGGVLPGVLEVLAGEDEGQEE 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1274.2270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFA1_ECTSI5.050e-8096.60BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
A0A6H5KGZ2_9PHAE1.410e-3698.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHB1_9PHAE1.900e-3287.96Sec7_N domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1274contigEcto-sp13_S_contig1274:10617..14406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score200.7
Seed ortholog evalue4.7e-49
Seed eggNOG ortholog2880.D8LFA1
Model size908
KEGG koko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759
Cds size429
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1274.2270.1prot_Ecto-sp13_S_contig1274.2270.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1274 10741..13732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462681.5018156-UTR-Ecto-sp13_S_contig1274:10616..107401681462681.5018156-UTR-Ecto-sp13_S_contig1274:10616..10740Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1274 10617..10740 +
1681462681.5714374-UTR-Ecto-sp13_S_contig1274:13732..137571681462681.5714374-UTR-Ecto-sp13_S_contig1274:13732..13757Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1274 13733..13757 +
1681462681.5874238-UTR-Ecto-sp13_S_contig1274:14076..144061681462681.5874238-UTR-Ecto-sp13_S_contig1274:14076..14406Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1274 14077..14406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462681.5132916-CDS-Ecto-sp13_S_contig1274:10740..108131681462681.5132916-CDS-Ecto-sp13_S_contig1274:10740..10813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1274 10741..10813 +
1681462681.5246074-CDS-Ecto-sp13_S_contig1274:11907..119721681462681.5246074-CDS-Ecto-sp13_S_contig1274:11907..11972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1274 11908..11972 +
1681462681.5342057-CDS-Ecto-sp13_S_contig1274:11981..120361681462681.5342057-CDS-Ecto-sp13_S_contig1274:11981..12036Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1274 11982..12036 +
1681462681.5453866-CDS-Ecto-sp13_S_contig1274:12485..126531681462681.5453866-CDS-Ecto-sp13_S_contig1274:12485..12653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1274 12486..12653 +
1681462681.5582948-CDS-Ecto-sp13_S_contig1274:13664..137321681462681.5582948-CDS-Ecto-sp13_S_contig1274:13664..13732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1274 13665..13732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1274.2270.1

>prot_Ecto-sp13_S_contig1274.2270.1 ID=prot_Ecto-sp13_S_contig1274.2270.1|Name=mRNA_Ecto-sp13_S_contig1274.2270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MCRTIRKETGWQERTLRQACDWATGELEQNQYPGVGMARYYRVVELSKSE
DVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRD
KTVRRGGRAQAVRCLLSCVTCARDVLGDRLHRQQGEVQQGAG*
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mRNA from alignment at Ecto-sp13_S_contig1274:10617..14406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1274.2270.1 ID=mRNA_Ecto-sp13_S_contig1274.2270.1|Name=mRNA_Ecto-sp13_S_contig1274.2270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3790bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1274:10617..14406+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCAGAGGCGGGCGTGCATCCTCCGCCGACAGCGAGCGACACCGGTA
CCAACGTCAGCAACAATGACGATAGCAGCACGGGTCAGCCGCCGTCCGGA
GGGGAGGATAAGCTTCTGCTGGCGATGTGCCGGACCATCAGGAAGGAGAC
GGGGTGGCAGGAGAGGACGCTGCGGCAAGCCTGCGACTGGGCCACAGGTA
CGTCGAGCGGATGGGAAGCGTCATGCCGCAAGCGCATCTTCTTATTTGCT
TCTTCCCTGGTTGCTTTATGCTGCTGCTGCTGCCGCCAGGTGGCTATATA
TTGTGAACGTGTCCTTGCCCTCGGACCTTGCGCCGACATCCTGCAGCCGC
AACACCAATGAAACTGCACATGTCGGATCGATCGATCGACACACAACCTC
CTTGGCCATACAGGCGAACGTGGAATGCTTCGCCAGTTTGCGGCGTCGGC
TTGAGTCAAAAGAGAAGGGTGCATACTTCCCCTTTGGAAAAGTCACCATA
ATATAAAATTCGTTTCGCTTTGTTTTCTCCTATAGCACAACCAGGACCTT
CAACACTGATTTTCGCTGCTGACCGTACTGAGAACCCGTTGTCGGCCGGT
CTCACAGAACACCTCGCCCATGGCGTGCATACACACCGTCAACACATGGT
ACCACACCTCACCTACTCTTGATGGCCCAACGCTTTCTTCCAGCTGCACC
TACCAATACCTGTAGTTACGCAGCTGTGGTGCCGGTTAAATCATTCCCGT
TGTGCATCACTTGACGATTGGGAGTTACTGGAGAGGCGCTGCAACTTGGT
TTTGCCCGTTTGGTCTTTTTAGGAATTGAACATACGAACACAGAGAGACT
ATCGTACCCGATAGAGATATGACCACAGCAGTCATCTCTGCAGCAATGGA
ATCGGCGCCCAACAAGACCTTGCTCTTTTCCGTACAAACCACCACCACGT
TCCTGGTTGCGTCAGGGTTTCCGTAGGCGGCTTCACTGCTAGCAGCCCCA
CTTGTCGGAATGCATTTCCTGAACAACAGGTGACGACAGATGATGCCGAT
CAGCCACCGTACGTAGGGCGCGAAGAAAAAAACAGCAAGCAAGAGCTGAC
TATGCCCATGCTACTGTGTGCCCAAGCTGGCATTAGCGCGAGTAGCCGCT
TTTACGACTGTACCTCCCCGTACCCGTTCACCCTGAACGTGTGGCTGAAC
ACCCCGATTCGGTTATGGGCAAGCTTTTACGCGCTTCGTGTAGGTCTCAT
ATTTTAACTCCACGCCGTCCGTTGTGTTTCCTGCTCGAAAGGCGAGCTCG
AGCAAAACCAGTATCCCGGGGTAGGGATGGCGCGGTATTACCGTGTGGTC
GAGCTCGCCATGGAGTCGAAGTCCGAGGACGTCGTTGAAGCGGCCCTGGG
CCAGCTGCACAAGCTAATCGGTGAGCCTGCGATACGTTGTTTAGCACAAG
CTTCGCATGGCTCCAGTGCATTTGTAACAAGCCTTACTTAAGCGAAAACG
GTGTTGGTGACCCGTTGGGTGCTGGGCATGGGTACTTTTCGAGGCTTCGT
GGTACGTGCTGCTTTGGTAGTGTCGCCTCTTATCGTGATATTGTGTTCGC
AGTTCTTATCGTGACACACAGGGCCTACTTCAGGGTCCGCGCGTGTATGA
GTCGCGTCCCACGTAGGACGCCTGTTTCCTCACCTCGCCTCTGGTTTGGA
ACTGCTACCCTCGTGGTTGCGTGCAACACGTTACCCATGCACCGCCTCGG
AATCAATCTAGATAATGTCGGCTATTCGTGTACCGCGCGTGCTCTCTCTT
TGTCGCCTTCGCTTTTTTTTTTGGGGGGGGGGGTGCTTTCTTGCGTCATG
TTATCGCCGACAAAATCAGCCGGTGGTCTCGTGAGGAGGAACACCATGAC
CACCCTCAAGGACGGGAGCTCTGCCAACCTCGGCGAGATCTTGGTGGGGG
TCGTGATGGAGACAGGGTCGCGGGATAAGACCGTAAGACGGGGCGGTCGG
GCCCAGGCCGTGAGGTGCCTCTTGTCGTGCGTGACTTCTACGGAGATTGA
GGCAAGCACGGTATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTTG
AAACGGCCGGCAGCTATTGTAGTATGTTGTAGCATGCCGTCCTGAGGTCG
GGGCCAAGTAGTCTAATGGGTAAGCCTTTCTAAGATTATTGTCAGTAGTG
TCGATGGTTTTGGTGTTTTGCTCGTAGGGTTGTAGCATCGTTGTTGTTCG
TGTTGTGGTTGTTGTTGCCGCTGCTGTCGTCGGCCCGTCCCAGCATGAAG
CATCCACGTATACCACCTGGAGTAGCATCAAAGTTCGGATTCGCAATTCG
TAGATTAGTAACAACCGTTTGTTGTCGGTGTAGTGCAGTTTCGCGCGTGT
TAACGAATGGGCCAATGTTCATGCTGGAGATCAACAATGCCGCACGTCCT
CGCCGCACGTCCTCGCTTTTCCCATACAGCCCCCAAAAACACAACAGTAC
AACCCATACAGCCCCCAAAACACACCAGTACAATGGTAGGTAGAATGCGG
CATGTGTGTATCATTAACGTGCGGGCGGTCGTCGCACAGGCGTGCAATCA
GTTTTTGAAGATCGATTGCTCCACAGCCGAGAGGATGCGAAGCTTTGCCG
ACACGTGCAGGCAAGGTATCGACGAGAGAGATGTTCGCAAAAGTCCACCT
TTCAGGCCATTGGAAGCCTCTTGGTTGTGGAGGAATCGAGGTTTAAAAAT
CGATCGCACAACCTGTGCTTTTGCCCGCACTCTTACGGCAAACACCACTC
GAGCGTTGAACGACTTCTGTGACAAGAGGGGAACGCCACTGCGCGTCTCG
AGAAGCAAGCGTGCTGCCCCCGTGATGTCGACATGTTTTACACCAGCAGC
AAAAGTAGCAAACCCCCCACCCGCCCCGCTTCCCCTTGAGCTGCGGTCAC
CAAAAAACGTTTGTCCGATCGATCCTAATCGTGGTATCCTCTCTGATGGC
ATCCATCGGCAGGTTCACGGAGAAGAGCTGCGTAAAGTTGTTTTGTTCGT
GCACGAGACGTACTTGGTGATCGACTCCACCGCCAACAGGGCGAGGTACA
ACAAGGCGCAGGCTAGGGCTACTCTCGACCACATCTTGCAGGTGCACGCG
CGGCGACCGCCTTCTCTATTTTCTTTTGTGTTTGTCCTATTGGTATCGAT
GGTGTCATTGCTATTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGTAGT
TTGCCTGGCGCTACGATACCGGAGGAGCTGTTCCTGGTGACGAAGGCAGG
GAGCCTTGAGAAAGCATGAGCTGGATGTGGACAAAAAGTCAAAGTTCGTG
TTTCGTAGTGGTGCTGCCTTTGTTGGAATACACACGACACAACGTCTTCT
TCTTGGGACCCCCCCCCCCTATCCCCCCCCTACGTCCGATGTGCCCCCCC
GCCAACGCAGATGACCTTCTCCAGACTGGAGATGGAATCGCCGCCGCCTA
GCCTCCACGGGGGGCCGGGGCAGCAGGCAACACCTTCCCCGAAGAAGCGC
CACAACAGTGCTATCGAGGCATTGCTCTCGCCAGCGAGACGCTCGGAGTT
ATCCCCGGCTGCTGCTGTGGAGGAGGAGGAAGCAGTGAAACCTTCGTCGG
AAACACAATCCGAAGGAGACGACGACGACGGCGGGGTGGGCGGCGATGGT
AGTGGCGATCCCCGGAATAGGTTGGGGGGCGTTTTGCCCGGGGTGTTGGA
GGTGCTTGCCGGAGAGGAGGAAGGGCAGGAGGATCTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1274:10617..14406+

>mRNA_Ecto-sp13_S_contig1274.2270.1 ID=mRNA_Ecto-sp13_S_contig1274.2270.1|Name=mRNA_Ecto-sp13_S_contig1274.2270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1274:10617..14406+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCGGACCATCAGGAAGGAGACGGGGTGGCAGGAGAGGACGCTGCG
GCAAGCCTGCGACTGGGCCACAGGCGAGCTCGAGCAAAACCAGTATCCCG
GGGTAGGGATGGCGCGGTATTACCGTGTGGTCGAGCTCTCGAAGTCCGAG
GACGTCGTTGAAGCGGCCCTGGGCCAGCTGCACAAGCTAATCGCCGGTGG
TCTCGTGAGGAGGAACACCATGACCACCCTCAAGGACGGGAGCTCTGCCA
ACCTCGGCGAGATCTTGGTGGGGGTCGTGATGGAGACAGGGTCGCGGGAT
AAGACCGTAAGACGGGGCGGTCGGGCCCAGGCCGTGAGGTGCCTCTTGTC
GTGCGTGACTTGTGCACGAGACGTACTTGGTGATCGACTCCACCGCCAAC
AGGGCGAGGTACAACAAGGCGCAGGCTAG
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