mRNA_Ecto-sp13_S_contig12736.2266.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12736.2266.1
Unique NamemRNA_Ecto-sp13_S_contig12736.2266.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12736.2266.1 vs. uniprot
Match: D7FYJ6_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ6_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 9.100e-30
Identity = 63/70 (90.00%), Postives = 63/70 (90.00%), Query Frame = 2 
Query:  143 SSTLSGKFKIGKKAVRWLPKWPSLSKAQQAAVPPLQYRDYPSQISLMRDASPIRSGLERGRGSVGDMSVA 352
            SS LSGKFKIGKKAVRWLPKWPSLSKAQQ A PP QYRDYPSQ SLMRDASPIRSGLER RGSVGDMS A
Sbjct: 1129 SSALSGKFKIGKKAVRWLPKWPSLSKAQQGADPPPQYRDYPSQSSLMRDASPIRSGLERSRGSVGDMSGA 1198
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BLAST of mRNA_Ecto-sp13_S_contig12736.2266.1 vs. uniprot
Match: A0A6H5K2T8_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.670e-17
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 2 
Query:   95 MDLPXXXXXXXXXXXXSSTLSGKFKIGKKAVRWLPKWPSLSKAQQAAVPPLQYRDYPSQISLMRDASPI 301
            MDLP XXXXX      SS  SGKFKIGKKAVRWLPKWPSLSKAQQ  VPP +Y+DYPSQISL++    +
Sbjct:  901 MDLPPXXXXXAAATVPSSAFSGKFKIGKKAVRWLPKWPSLSKAQQEVVPPPRYQDYPSQISLVKGGGGV 969
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12736.2266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYJ6_ECTSI9.100e-3090.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5K2T8_9PHAE1.670e-1769.57Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12736contigEcto-sp13_S_contig12736:1181..2454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons3
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462681.000897-CDS-Ecto-sp13_S_contig12736:1182..12891681462681.000897-CDS-Ecto-sp13_S_contig12736:1182..1289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12736 1183..1289 -
1681462681.011909-CDS-Ecto-sp13_S_contig12736:1580..18081681462681.011909-CDS-Ecto-sp13_S_contig12736:1580..1808Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12736 1581..1808 -
1681462681.0250685-CDS-Ecto-sp13_S_contig12736:2402..24541681462681.0250685-CDS-Ecto-sp13_S_contig12736:2402..2454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12736 2403..2454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12736.2266.1prot_Ecto-sp13_S_contig12736.2266.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12736 1183..2454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12736.2266.1

>prot_Ecto-sp13_S_contig12736.2266.1 ID=prot_Ecto-sp13_S_contig12736.2266.1|Name=mRNA_Ecto-sp13_S_contig12736.2266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
SGRRRRGIGRRRLKSRTGAAFRCSCCFFFPRDGLASTDKHDGYRNDVFVN
VVGEVQDREESCSLAAQVAVSQQGSAGGGPPAAVPGLPQPDFADERCFPD
TLGPGTRQGQRGGYVGGGGSDRWRRWTWR
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mRNA from alignment at Ecto-sp13_S_contig12736:1181..2454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12736.2266.1 ID=mRNA_Ecto-sp13_S_contig12736.2266.1|Name=mRNA_Ecto-sp13_S_contig12736.2266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1274bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12736:1181..2454- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGCGAAGACGGCGGGGTATTGGAAGACGACGACTCAAATCGAGAAC
AGGTCGGTCTCTTGCACTGCACTACTAGTGTTGTTGTTGTTGTTGTTGTT
GGTGGTGGTGTGTGGTGGTGGTGGTATTATTGTTGGTGTTGTTGTCGTTG
CAGCAGGGAGAGCGCTCGATAGCTGTTGTAAAGGTGGATGTTTGGGTTGG
TGGTACTATTTACAACCGCGTGGACAGTCACTCACAACGAGGATCTCTTG
CCGCCGTCCCCGCGATTACTCCCGTGTCAACCTGGAGACATGTAGAACAA
ACAAACCGTTTCCCTCAGCGAAGAGTAATAGTCCCCGCCGTCCCCATTCC
TTCCGATTACTCGGGTCCGAGACGACTTGCTGCTCTTGCCAGCAAGCAAC
TACAACTAGCCAACATTAGGGCTTCATTGAGATCGACATCGACGGGCTGA
ATTTCACGAGTGGCCCTCCTCTTACCCGACTCTTTCTTTTTTTTGCTGCT
CTCGTGGTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTCTC
TCTTTCTGTCTCTTCTCTGCCTTCATCTCCTCACCCAAACCCATCCCAAT
CCTTCCCCGCTGCCGCTTGCCCAAAAAACAACGACGCATCACGCAGGCGC
AGCTTTCCGCTGCAGCTGCTGCTTCTTCTTCCCTAGGGATGGACTTGCCT
CCACCGATAAACACGACGGCTACCGCAACGACGTCTTCGTCAACGTTGTC
GGGGAAGTTCAAGATCGGGAAGAAAGCTGTTCGTTGGCTGCCCAAGTGGC
CGTCTCTCAGCAAGGCTCAGCAGGCGGCGGTCCCCCCGCTGCAGTACCGG
GACTACCCCAGCCAGATTTCGCTGGTGAGTGGTGGTGGTGGTGTTGTCCG
TGTTGTGGTTGTGGTGGTGGTTGTGGTTCTTGTTGGCGTTGATGTCATCA
TTGTAGTTGCCGTGCACGACGGGCTTGCTTTTGGTGGTGTGTTTCTTGAC
GTTCATGCTGTCTGTGGCGGTCATGATGACCACCCCGTCGCTCCTGGCTA
CGACTCTTTTACACCGTATGGACCAAGTACCCCCCCACACACACACGGTA
AACGCCGATGTACCTGTCACCGCGTCCCACCGTCGCTTGTCCTTACCATC
ATTCCCTCCCTACAGATGAGAGATGCTTCCCCGATACGCTCGGGCCTGGA
ACGCGGCAGGGGCAGCGTGGGGGATATGTCGGTGGCGGCGGGAGCGACCG
GTGGCGGCGGTGGACATGGAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12736:1181..2454-

>mRNA_Ecto-sp13_S_contig12736.2266.1 ID=mRNA_Ecto-sp13_S_contig12736.2266.1|Name=mRNA_Ecto-sp13_S_contig12736.2266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12736:1181..2454- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGCGAAGACGGCGGGGTATTGGAAGACGACGACTCAAATCGAGAAC
AGGCGCAGCTTTCCGCTGCAGCTGCTGCTTCTTCTTCCCTAGGGATGGAC
TTGCCTCCACCGATAAACACGACGGCTACCGCAACGACGTCTTCGTCAAC
GTTGTCGGGGAAGTTCAAGATCGGGAAGAAAGCTGTTCGTTGGCTGCCCA
AGTGGCCGTCTCTCAGCAAGGCTCAGCAGGCGGCGGTCCCCCCGCTGCAG
TACCGGGACTACCCCAGCCAGATTTCGCTGATGAGAGATGCTTCCCCGAT
ACGCTCGGGCCTGGAACGCGGCAGGGGCAGCGTGGGGGATATGTCGGTGG
CGGCGGGAGCGACCGGTGGCGGCGGTGGACATGGAGG
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