mRNA_Ecto-sp13_S_contig10203.227.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10203.227.1
Unique NamemRNA_Ecto-sp13_S_contig10203.227.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10203.227.1 vs. uniprot
Match: A0A6H5L9F0_9PHAE (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F0_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.360e-62
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:    1 MNMTHGLRCQSSNSTSIVLEWHERAPRYLVECKRASEEWGGRGCRAEHTGCGAPSILVVSQLQPSTDYVFRLHSANTEGQFGDPGPEVIFSTKG 282
            MNMT+GLRCQSSNSTSIVLEWHERAPRYLVE KRASEEWGGRGCRAEHTGCGAPSILVVSQLQPSTDYVFRLHSAN E QFGDPGPEV+FSTKG
Sbjct:    1 MNMTYGLRCQSSNSTSIVLEWHERAPRYLVEYKRASEEWGGRGCRAEHTGCGAPSILVVSQLQPSTDYVFRLHSANAECQFGDPGPEVVFSTKG 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10203.227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9F0_9PHAE2.360e-6294.68Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10203contigEcto-sp13_S_contig10203:3335..4261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size285
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionFibronectin type III
Ec32 orthologEc-06_000050.1
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.0505202-CDS-Ecto-sp13_S_contig10203:3334..34451681462515.0505202-CDS-Ecto-sp13_S_contig10203:3334..3445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10203 3335..3445 +
1681462515.060456-CDS-Ecto-sp13_S_contig10203:4087..42611681462515.060456-CDS-Ecto-sp13_S_contig10203:4087..4261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10203 4088..4261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10203.227.1prot_Ecto-sp13_S_contig10203.227.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10203 3335..4261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10203.227.1

>prot_Ecto-sp13_S_contig10203.227.1 ID=prot_Ecto-sp13_S_contig10203.227.1|Name=mRNA_Ecto-sp13_S_contig10203.227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MNMTHGLRCQSSNSTSIVLEWHERAPRYLVECKRASEEWGGRGCRAEHTG
CGAPSILVVSQLQPSTDYVFRLHSANTEGQFGDPGPEVIFSTKGE
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mRNA from alignment at Ecto-sp13_S_contig10203:3335..4261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10203.227.1 ID=mRNA_Ecto-sp13_S_contig10203.227.1|Name=mRNA_Ecto-sp13_S_contig10203.227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10203:3335..4261+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACATGACCCATGGTTTGCGGTGCCAATCGTCCAACTCTACATCCAT
TGTGCTTGAATGGCATGAGAGAGCTCCGCGGTACTTGGTGGAGTGCAAGC
GAGCGAGCGAGGTGGGCGTCAGTCACGCTTAAGTTTATTTCAAGGTTTAC
AGCAGTCAGTACGCATGTGCCTATTTAGGTACCTGTGTCGGGAATGCTTG
TTGTCTACGATAGGCGGGGACACAGGCGGGACGACGGTCAATTTCTTGTC
TACAGGCGGAAGATGTTTTTTTTTGCGTTACTCGGCGGTAATTGCTTTTG
GCGGAGGCAGTGCAACCCATATGTGCCGGTTGACAGTACAATAATTGTTT
GCGTTTAGCGGCGAAACCGCTTCAGTGGATGTGGCAAAAAAGATGTTTGT
CGCCGGTTTCCCCGGACCGCCCACCAGGTTAGGGTTACTATTAGGGTAAT
TATCGTCGGGAAGTTTTCGACGCCCATGATCTTAACGTTTTGGCAGGGTG
TTCATATTGCAGGGTCATCTACATGGATTCCAGAGCAGAAAAGACGTTGG
ACCCAGTCCCTAAAACACGGAGCAGTATATAGTGGTGATGGCGTGCAACA
TTCGTGTGTTGCAGAAGAGCACCAGAGCTCCTCTGTAATAGGAGGATTCC
ACACCGTACTGTTGGGTCTTTTCGGTGGCGTACAGTATGTAGTGTTTACC
CCCGATAATCCACTAATTTTTTCGCCGTGTTGTTATTTTTTTCTCGACGC
CAGGAATGGGGAGGGCGAGGTTGTCGGGCAGAACACACCGGCTGCGGCGC
GCCGAGCATTTTGGTGGTCAGCCAGCTGCAGCCCTCTACGGACTACGTCT
TCCGTCTGCACTCCGCAAACACAGAAGGCCAGTTCGGCGACCCTGGTCCA
GAAGTTATATTTAGTACAAAGGGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10203:3335..4261+

>mRNA_Ecto-sp13_S_contig10203.227.1 ID=mRNA_Ecto-sp13_S_contig10203.227.1|Name=mRNA_Ecto-sp13_S_contig10203.227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10203:3335..4261+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACATGACCCATGGTTTGCGGTGCCAATCGTCCAACTCTACATCCAT
TGTGCTTGAATGGCATGAGAGAGCTCCGCGGTACTTGGTGGAGTGCAAGC
GAGCGAGCGAGGAATGGGGAGGGCGAGGTTGTCGGGCAGAACACACCGGC
TGCGGCGCGCCGAGCATTTTGGTGGTCAGCCAGCTGCAGCCCTCTACGGA
CTACGTCTTCCGTCTGCACTCCGCAAACACAGAAGGCCAGTTCGGCGACC
CTGGTCCAGAAGTTATATTTAGTACAAAGGGTGAG
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