mRNA_Ecto-sp13_S_contig12734.2265.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12734.2265.1 vs. uniprot
Match: A0A6H5LE45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE45_9PHAE) HSP 1 Score: 575 bits (1482), Expect = 2.250e-188 Identity = 524/690 (75.94%), Postives = 528/690 (76.52%), Query Frame = 1
Query: 1 RAMQSETARGGXXXXXVSPRILSQPSSPCFSAASHSSSACGGSPGRXXXXXXXXRHGSGFSYAHDDGRGGGSGPPGFPMDGRGSLRMDSDGAMHTTLSLRLSGDGGRSAADGXXXXXXXXXXXXXXXXX-FATAPAGGNISMGFPSSXXXXXXXXXXXXXXXXXXXRNSRGVIGGGSRSNGASPAMHGMSAPKSLHSSRSASRLIGGSAAGYYDDHGVRTGGSGLPHGASLLRPGSAGPPSRSASSSLMPLPPDDIV-TSSSFHELSSSGMAGGIRASMMARKSSYDERRVAPSWLDGRDGAAAPGGGGDASHAGVRGAISRPTDLSINHPYGGGGRDAAGDGASSDSARDASTWGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDMTAMRCAEFALLTPKRALEQQQRQQSSGLTTSLDMWASSSSPAGWASQXGGSAEARSSGARAVVTHAGSANSSSGGSGGPAVGSEVGSPEGPSASRVAGAXXXXXXXXXXXXXXXXXXXXXXXRQGSVRAAFGATLDSXXXXXXXXXXEAGIGGSAFDSSFPLRADGNSRRVNGSNGAXXXXXXXXGVEAQRYDSPLMKASSFFGDDLMGEALEDTGASLSSSMPENLNTLHHQXXXXXXXXXXXAFSTGASPSRGGSXXXXXXXTGGVVGMSSPGPLDGSSLAAALQNQLSF 2064
R MQSETARGGXXXX VSPRILSQPSSPCFSAASHSSSACGGSP XXXXXXXX HGSGFSYAHDDGRGGG GPPGFPMDGRGSLRMDSDGAMHTTLSLRLSGD GR AADGXXXXXXXXXXXXXXXXX FATAPAGGNISMGFPSSXXXXXXXXXXXXXXXXXXX V SRSNGASP MHGMSAPKSLHSSRSASRLIGGSAAGYYDDHGVRT TSSSFHELS SGMAGGIRASMMARKSSYDERRV PSWLDGRDGAAAPGGGGDASHAGVRGAISRPTDL INHPYGGGGRDAAGDGASSD ARDASTWGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TA CAEFALLTPK X GGPA+GSEVGSP+GPSASRVAGAXXXXXXXXXXXXXXXXXXXXXXXRQGSVRAAFGATLD XXXXXXXXXXEAGIGG AFDSSFPLRADG+SRR NGSNGAXXXXX GVEAQRYDSPLMK SSFFG+DLMGEALEDTG SLSSSMPENLN LH XXXXXXXXXXX X VVG SSPG LDGSSLAAALQNQLSF
Sbjct: 518 RVMQSETARGGXXXXGVSPRILSQPSSPCFSAASHSSSACGGSPXXXXXXXXXXXHGSGFSYAHDDGRGGGGGPPGFPMDGRGSLRMDSDGAMHTTLSLRLSGDFGRGAADGXXXXXXXXXXXXXXXXXGFATAPAGGNISMGFPSSXXXXXXXXXXXXXXXXXXXXX---VXXXXSRSNGASPTMHGMSAPKSLHSSRSASRLIGGSAAGYYDDHGVRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSSFHELSISGMAGGIRASMMARKSSYDERRVTPSWLDGRDGAAAPGGGGDASHAGVRGAISRPTDLRINHPYGGGGRDAAGDGASSDGARDASTWGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TATMCAEFALLTPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPALGSEVGSPDGPSASRVAGAXXXXXXXXXXXXXXXXXXXXXXXRQGSVRAAFGATLDXXXXXXXXXXXEAGIGGGAFDSSFPLRADGDSRRANGSNGAXXXXXG--GVEAQRYDSPLMKTSSFFGEDLMGEALEDTGVSLSSSMPENLNNLHXXXXXXXXXXXXXXXXXXXXXXXXXXX---------VVGKSSPGSLDGSSLAAALQNQLSF 1190
BLAST of mRNA_Ecto-sp13_S_contig12734.2265.1 vs. uniprot
Match: D7G0H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H4_ECTSI) HSP 1 Score: 496 bits (1278), Expect = 7.680e-164 Identity = 471/640 (73.59%), Postives = 472/640 (73.75%), Query Frame = 1
Query: 163 RHGSGFSYAHDDGRGGGSGPPGFPMDGRGSLRMDSDGAMHTTLSLRLSGDGGRSAADGXXXXXXXXXXXXXXXXX--FATAPAGGNISMGFPSSXXXXXXXXXXXXXXXXXXXRNSRGVIGGGSRSNGASPAMHGMSAPKSLHSSRSASRLIGGSAAGYYDDHGVRTGGSG-LPHGASLLRPGSAGPPSRSASSSLMPLPPDDIVTSSSFHELSSSGMAGGIRASMMARKSSYDERRVAPSWLDGRDGAAAPGGGGDASHAGVRGAISRPTDLSINHPYGGGGRDAAGDGASSDSARDASTWGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDMTAMRCAEFALLTPKRALEQQQRQQS-SGLTTSLDMWASSSSPAGWASQXGGSAEARSSGARAVVTHAGSANSSSGGSGGPAVGSEVGSPEGPSASRVAGAXXXXXXXXXXXXXXXXXXXXXXXRQGSVRAAFGATLDSXXXXXXXXXX-EAGIGGSAFDSSFPLRADGNSRRVNGSNGAXXXXXXXXGVEAQRYDSPLMKASSFFGDDLMGEALEDTGASLSSSMPENLNTLHHQXXXXXXXXXXXAFSTGASPSRGGSXXXXXXXTGG-VVGMSSPGPLDGSSLAAALQNQLSF 2064
RHGSGFSYAHDDGRGGGSGPPGFPMDGRGSLRMDSDG MHTTLSLRLSGDGGR ADG XXXXXXXXXXXXXXXX FATAPAGGNISMGFPSS XXXXX XXXXXXX SRSNGASPAMHGMSAPKSLHSSRSASRLIGGSAAGYYDDHGVRTG LPHGASLLRPGSAGP FHELSSSGMAG IRASMMARKSSYDERRVAPSWLDGRDGAAAPGGGGDASHAGVRGAISRPTDL INHPYGGGGRDAAGDGA D ARDASTW AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SGLT SLDMW SS X VGSEVGSPEGPSASRVAGAXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX EA IGG FDSSFPLRA G+SRRVNGSNGAXXXXXXX GVEAQRYDSPLMK SSFFGDDLMGEALEDTGASLSSSMPENLNTLHH XXXXXXXXXXX XXXXXXX VVG SSPGPLDGSSLAAALQNQLSF
Sbjct: 78 RHGSGFSYAHDDGRGGGSGPPGFPMDGRGSLRMDSDGTMHTTLSLRLSGDGGRGVADGGXXXXXXXXXXXXXXXXSGFATAPAGGNISMGFPSSGXXXXXSLHXXXXXXX-------------SRSNGASPAMHGMSAPKSLHSSRSASRLIGGSAAGYYDDHGVRTGXXXXLPHGASLLRPGSAGPXXXXXXXXXXXXXXXXXXXXXXFHELSSSGMAGSIRASMMARKSSYDERRVAPSWLDGRDGAAAPGGGGDASHAGVRGAISRPTDLRINHPYGGGGRDAAGDGAGIDGARDASTWAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGLTRSLDMWPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSEVGSPEGPSASRVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEACIGGGTFDSSFPLRAVGDSRRVNGSNGAXXXXXXX-GVEAQRYDSPLMKTSSFFGDDLMGEALEDTGASLSSSMPENLNTLHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGKSSPGPLDGSSLAAALQNQLSF 703 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12734.2265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12734.2265.1 >prot_Ecto-sp13_S_contig12734.2265.1 ID=prot_Ecto-sp13_S_contig12734.2265.1|Name=mRNA_Ecto-sp13_S_contig12734.2265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=687bp MQSETARGGGGGGGVSPRILSQPSSPCFSAASHSSSACGGSPGRSGRGGGback to top mRNA from alignment at Ecto-sp13_S_contig12734:579..2880+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12734.2265.1 ID=mRNA_Ecto-sp13_S_contig12734.2265.1|Name=mRNA_Ecto-sp13_S_contig12734.2265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2302bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12734:579..2880+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12734:579..2880+ >mRNA_Ecto-sp13_S_contig12734.2265.1 ID=mRNA_Ecto-sp13_S_contig12734.2265.1|Name=mRNA_Ecto-sp13_S_contig12734.2265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2061bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12734:579..2880+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |