mRNA_Ecto-sp13_S_contig12732.2264.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12732.2264.1
Unique NamemRNA_Ecto-sp13_S_contig12732.2264.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12732.2264.1 vs. uniprot
Match: D8LBZ1_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ1_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 3.600e-40
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 MKGARGGAAPRLVPLEEEQRWRTMPGVGVQSHPTGIGAASSSFDTFSGTGGEGVNLSAAPGGVPGLPPGINAAAXXXXVASCYMGNHGG-GVG 276
            MKGARGGAAPRLVPLEEEQRWRTMPGVG QSHP G+GAA  SFD FSG GGEGVNLSA PGGVPGLPPGINAAA XX VASC+MGNHGG GVG
Sbjct: 1014 MKGARGGAAPRLVPLEEEQRWRTMPGVGGQSHPLGVGAALPSFDAFSGAGGEGVNLSAVPGGVPGLPPGINAAAAXXTVASCFMGNHGGRGVG 1106
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BLAST of mRNA_Ecto-sp13_S_contig12732.2264.1 vs. uniprot
Match: A0A6H5JQB9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQB9_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 2.130e-36
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 MKGARGGAAPRLVPLEEEQRWRTMPGVGVQSHPTGIGAASSSFDTFSGTGGEGVNLSAAPGGVPGLPPGINAAAXXXXVASCYMGNH 261
            MKGARGGAAPRLVPLEEEQRWRTMPGVG QSHP+GIG A SSFDTFSGTGGEGVNLSAAPG VPGLPPGI+AAA    V S YMGNH
Sbjct:  970 MKGARGGAAPRLVPLEEEQRWRTMPGVGGQSHPSGIGEALSSFDTFSGTGGEGVNLSAAPGSVPGLPPGIDAAATT--VTSFYMGNH 1054
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12732.2264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBZ1_ECTSI3.600e-4087.10Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JQB9_9PHAE2.130e-3686.21Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12732contigEcto-sp13_S_contig12732:941..1582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size382
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-20_003830.1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462680.893663-CDS-Ecto-sp13_S_contig12732:940..12731681462680.893663-CDS-Ecto-sp13_S_contig12732:940..1273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12732 941..1273 -
1681462680.903639-CDS-Ecto-sp13_S_contig12732:1534..15821681462680.903639-CDS-Ecto-sp13_S_contig12732:1534..1582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12732 1535..1582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12732.2264.1prot_Ecto-sp13_S_contig12732.2264.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12732 941..1582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12732.2264.1

>prot_Ecto-sp13_S_contig12732.2264.1 ID=prot_Ecto-sp13_S_contig12732.2264.1|Name=mRNA_Ecto-sp13_S_contig12732.2264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MKGARGGAAPRLVPLEEEQRWRTMPGVGVQSHPTGIGAASSSFDTFSGTG
GEGVNLSAAPGGVPGLPPGINAAAAAATVASCYMGNHGGGVGVSGGGGGA
GVAPPPVRATSRGAAGGGGGGAAMSSG
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mRNA from alignment at Ecto-sp13_S_contig12732:941..1582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12732.2264.1 ID=mRNA_Ecto-sp13_S_contig12732.2264.1|Name=mRNA_Ecto-sp13_S_contig12732.2264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12732:941..1582- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGGAGCACGAGGAGGCGCAGCTCCTCGGCTTGTGCCTTTGGAGGT
GTGTGTGTGTGTGTGCGTGTGTGTGTGTACGTGCGCGTGCGTATGTGTGT
TGTGTGCGTTTCTTTCATGGGCATCGATAATGGCGCCAACCAGCTGACCC
ACGAAATGACGTCATGTTTCTCCGGATGTTTTTTTTTTTTCCGCTGGTGT
GGCTTCTGTCTCCGGAACTGTCCATTGGCTGCTGCAGTAGCACGCCCATG
TGCGTAAAGCTAGCGGTTTATCAGACACGCACTTTGTTTTCTCTTCTCTC
TCTCATTAGGAGGAGCAGCGCTGGCGAACCATGCCCGGCGTGGGCGTCCA
GAGCCACCCAACAGGGATAGGCGCGGCCTCGTCTTCGTTTGACACGTTTT
CGGGCACCGGCGGCGAAGGGGTTAACCTGTCCGCCGCCCCGGGCGGCGTC
CCCGGGCTACCGCCGGGCATCAACGCCGCCGCCGCCGCCGCCACCGTCGC
CAGCTGCTACATGGGGAACCATGGCGGCGGCGTCGGTGTCAGTGGTGGCG
GCGGTGGGGCCGGAGTCGCGCCGCCGCCTGTGCGGGCCACGAGTCGTGGT
GCGGCAGGGGGCGGCGGCGGCGGCGCGGCCATGTCGAGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12732:941..1582-

>mRNA_Ecto-sp13_S_contig12732.2264.1 ID=mRNA_Ecto-sp13_S_contig12732.2264.1|Name=mRNA_Ecto-sp13_S_contig12732.2264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12732:941..1582- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGGAGCACGAGGAGGCGCAGCTCCTCGGCTTGTGCCTTTGGAGGA
GGAGCAGCGCTGGCGAACCATGCCCGGCGTGGGCGTCCAGAGCCACCCAA
CAGGGATAGGCGCGGCCTCGTCTTCGTTTGACACGTTTTCGGGCACCGGC
GGCGAAGGGGTTAACCTGTCCGCCGCCCCGGGCGGCGTCCCCGGGCTACC
GCCGGGCATCAACGCCGCCGCCGCCGCCGCCACCGTCGCCAGCTGCTACA
TGGGGAACCATGGCGGCGGCGTCGGTGTCAGTGGTGGCGGCGGTGGGGCC
GGAGTCGCGCCGCCGCCTGTGCGGGCCACGAGTCGTGGTGCGGCAGGGGG
CGGCGGCGGCGGCGCGGCCATGTCGAGCGGG
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